Wall clock time and date at job start Tue Mar 31 2020 05:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.52997 * 109.47127 * 120.00132 * 2 1 3 5 5 C 1.53001 * 109.47049 * 185.00237 * 4 2 1 6 6 C 1.53002 * 109.46964 * 180.02562 * 5 4 2 7 7 C 1.53004 * 117.49484 * 243.74556 * 6 5 4 8 8 C 1.52999 * 117.49835 * 175.08740 * 6 5 4 9 9 N 1.46500 * 109.47249 * 240.00642 * 2 1 3 10 10 C 1.34770 * 120.00256 * 84.99846 * 9 2 1 11 11 O 1.21592 * 120.00149 * 359.97438 * 10 9 2 12 12 N 1.34777 * 119.99883 * 180.02562 * 10 9 2 13 13 C 1.46507 * 120.00051 * 180.02562 * 12 10 9 14 14 C 1.52994 * 109.47438 * 179.97438 * 13 12 10 15 15 C 1.53001 * 109.46685 * 299.99813 * 14 13 12 16 16 C 1.53003 * 109.47203 * 59.99352 * 14 13 12 17 17 C 1.50699 * 109.47393 * 179.97438 * 14 13 12 18 18 H 1.08003 * 119.99695 * 0.02562 * 17 14 13 19 19 C 1.37876 * 120.00268 * 179.97438 * 17 14 13 20 20 N 1.31519 * 119.99639 * 0.02562 * 19 17 14 21 21 Si 1.86792 * 120.00236 * 180.02562 * 19 17 14 22 22 H 1.48497 * 109.47009 * 90.00278 * 21 19 17 23 23 H 1.48498 * 109.47242 * 210.00685 * 21 19 17 24 24 H 1.48505 * 109.46935 * 330.00246 * 21 19 17 25 25 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 27 27 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 28 28 H 1.08998 * 109.47192 * 305.00392 * 4 2 1 29 29 H 1.08998 * 109.46934 * 65.00238 * 4 2 1 30 30 H 1.08998 * 109.47250 * 300.00119 * 5 4 2 31 31 H 1.08998 * 109.47252 * 60.00195 * 5 4 2 32 32 H 1.08992 * 115.55236 * 29.41320 * 6 5 4 33 33 H 1.08994 * 117.49854 * 359.97438 * 7 6 5 34 34 H 1.09000 * 117.49523 * 145.02430 * 7 6 5 35 35 H 1.08994 * 117.49800 * 214.97505 * 8 6 5 36 36 H 1.09007 * 117.49686 * 359.97438 * 8 6 5 37 37 H 0.97005 * 119.99374 * 264.99912 * 9 2 1 38 38 H 0.96997 * 120.00470 * 359.97438 * 12 10 9 39 39 H 1.09005 * 109.46503 * 299.99994 * 13 12 10 40 40 H 1.09001 * 109.46970 * 59.98747 * 13 12 10 41 41 H 1.08995 * 109.47467 * 60.00035 * 15 14 13 42 42 H 1.09004 * 109.46886 * 179.97438 * 15 14 13 43 43 H 1.08999 * 109.47337 * 299.99670 * 15 14 13 44 44 H 1.08999 * 109.46469 * 60.00484 * 16 14 13 45 45 H 1.08997 * 109.46991 * 180.02562 * 16 14 13 46 46 H 1.08995 * 109.47315 * 300.00188 * 16 14 13 47 47 H 0.96997 * 119.99716 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5649 -0.6132 1.3137 6 6 4.0749 -1.3351 2.5626 7 6 4.7742 -0.4911 3.6302 8 6 5.5899 -1.4401 2.7486 9 7 2.0184 -0.6905 -1.1962 10 6 2.1471 -0.0181 -2.3571 11 8 1.8575 1.1616 -2.4118 12 7 2.5959 -0.6535 -3.4577 13 6 2.7364 0.0776 -4.7195 14 6 3.2607 -0.8686 -5.8015 15 6 4.6229 -1.4221 -5.3784 16 6 2.2763 -2.0248 -5.9887 17 6 3.4046 -0.1167 -7.0996 18 1 3.1481 0.9313 -7.1479 19 6 3.8646 -0.7665 -8.2253 20 7 4.1774 -2.0426 -8.1663 21 14 4.0436 0.1656 -9.8342 22 1 5.4059 0.7506 -9.9183 23 1 3.8335 -0.7655 -10.9717 24 1 3.0336 1.2528 -9.8914 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.6054 -0.2618 2.1369 29 1 1.7517 -1.7715 1.2055 30 1 3.9995 -1.0727 0.4259 31 1 3.8532 0.4370 1.3574 32 1 3.4668 -2.1734 2.9023 33 1 4.8713 0.5782 3.4425 34 1 4.6265 -0.7746 4.6722 35 1 5.9785 -2.3474 3.2111 36 1 6.2233 -0.9953 1.9809 37 1 2.2491 -1.6317 -1.1527 38 1 2.8267 -1.5946 -3.4143 39 1 1.7660 0.4723 -5.0206 40 1 3.4380 0.9010 -4.5862 41 1 4.5185 -1.9660 -4.4397 42 1 4.9963 -2.0965 -6.1491 43 1 5.3243 -0.5985 -5.2451 44 1 1.3058 -1.6304 -6.2901 45 1 2.6500 -2.6990 -6.7592 46 1 2.1718 -2.5687 -5.0500 47 1 4.5013 -2.4996 -8.9582 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458641749.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:52 Heat of formation + Delta-G solvation = -49.841023 kcal Electronic energy + Delta-G solvation = -22634.751206 eV Core-core repulsion = 19430.755822 eV Total energy + Delta-G solvation = -3203.995384 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.10871 -38.90196 -38.20337 -36.82114 -34.97403 -33.25068 -32.14744 -30.48479 -27.55006 -27.43476 -26.61734 -25.20906 -23.21242 -22.44603 -21.58439 -21.21024 -20.55145 -19.52456 -17.77066 -17.33568 -16.64698 -16.57435 -16.30994 -15.73117 -15.50612 -15.07103 -14.81225 -14.73336 -14.66813 -14.23019 -13.98371 -13.67855 -13.18460 -13.08727 -13.01792 -12.68126 -12.58895 -12.52741 -12.42218 -12.26005 -12.21426 -12.13224 -12.05011 -11.67662 -11.47008 -11.31258 -11.10570 -10.99478 -10.73619 -10.69411 -10.39426 -10.21218 -9.61050 -8.01711 -6.17237 1.42872 1.45530 1.53915 1.88683 2.27498 2.47004 2.94429 3.21854 3.47318 3.61030 4.01356 4.07153 4.11418 4.22815 4.34432 4.44301 4.54359 4.56040 4.59784 4.72606 4.80664 4.82360 4.84090 4.93622 4.99712 5.04704 5.07411 5.08886 5.12559 5.21478 5.23789 5.26068 5.29892 5.36575 5.40996 5.51091 5.65979 5.68014 5.68576 5.72934 6.15386 6.16502 6.23435 6.44930 6.87072 7.23793 7.50472 7.71580 8.97287 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023552 B = 0.003197 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.579231 B = 8756.842297 C = 9392.756646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.157 3.843 3 H 0.059 0.941 4 C -0.108 4.108 5 C -0.089 4.089 6 C -0.150 4.150 7 C -0.182 4.182 8 C -0.192 4.192 9 N -0.727 5.727 10 C 0.696 3.304 11 O -0.644 6.644 12 N -0.728 5.728 13 C 0.169 3.831 14 C 0.053 3.947 15 C -0.119 4.119 16 C -0.119 4.119 17 C -0.530 4.530 18 H 0.043 0.957 19 C 0.029 3.971 20 N -0.899 5.899 21 Si 0.945 3.055 22 H -0.279 1.279 23 H -0.282 1.282 24 H -0.276 1.276 25 H 0.070 0.930 26 H 0.082 0.918 27 H 0.028 0.972 28 H 0.095 0.905 29 H 0.087 0.913 30 H 0.058 0.942 31 H 0.050 0.950 32 H 0.117 0.883 33 H 0.088 0.912 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.084 0.916 37 H 0.408 0.592 38 H 0.404 0.596 39 H 0.032 0.968 40 H 0.032 0.968 41 H 0.037 0.963 42 H 0.062 0.938 43 H 0.016 0.984 44 H 0.017 0.983 45 H 0.062 0.938 46 H 0.037 0.963 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.134 -3.577 22.106 22.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.052 3.948 3 H 0.078 0.922 4 C -0.146 4.146 5 C -0.127 4.127 6 C -0.168 4.168 7 C -0.219 4.219 8 C -0.229 4.229 9 N -0.384 5.384 10 C 0.395 3.605 11 O -0.526 6.526 12 N -0.383 5.383 13 C 0.044 3.956 14 C 0.052 3.948 15 C -0.176 4.176 16 C -0.177 4.177 17 C -0.568 4.568 18 H 0.062 0.938 19 C -0.171 4.171 20 N -0.538 5.538 21 Si 0.772 3.228 22 H -0.205 1.205 23 H -0.207 1.207 24 H -0.201 1.201 25 H 0.089 0.911 26 H 0.101 0.899 27 H 0.048 0.952 28 H 0.113 0.887 29 H 0.106 0.894 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.135 0.865 33 H 0.107 0.893 34 H 0.122 0.878 35 H 0.120 0.880 36 H 0.102 0.898 37 H 0.244 0.756 38 H 0.241 0.759 39 H 0.051 0.949 40 H 0.051 0.949 41 H 0.055 0.945 42 H 0.081 0.919 43 H 0.035 0.965 44 H 0.036 0.964 45 H 0.081 0.919 46 H 0.056 0.944 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.327 -2.657 21.935 22.217 hybrid contribution 0.461 -0.030 -1.334 1.412 sum -1.867 -2.687 20.601 20.859 Atomic orbital electron populations 1.22154 0.95087 1.02663 1.01812 1.20906 0.94015 0.96416 0.83438 0.92236 1.21796 0.94852 1.01913 0.96009 1.21153 0.95803 0.99401 0.96321 1.22376 0.94737 1.02106 0.97539 1.23107 1.04596 0.97389 0.96836 1.23033 0.94202 1.02273 1.03420 1.45116 1.71299 1.13999 1.07983 1.16245 0.78182 0.84740 0.81290 1.90848 1.59491 1.16720 1.85544 1.45207 1.69997 1.14228 1.08881 1.21078 0.98201 0.94293 0.81987 1.18341 0.92850 0.92375 0.91199 1.21651 0.97717 0.99397 0.98879 1.21657 0.97160 0.99115 0.99786 1.21285 1.44269 0.96033 0.95226 0.93839 1.25443 0.94914 0.95655 1.01103 1.69908 1.44774 1.09489 1.29604 0.85763 0.78233 0.78643 0.80194 1.20480 1.20731 1.20148 0.91135 0.89889 0.95242 0.88700 0.89442 0.92307 0.93131 0.86491 0.89315 0.87841 0.88040 0.89763 0.75598 0.75897 0.94926 0.94937 0.94455 0.91891 0.96480 0.96416 0.91872 0.94435 0.93020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.15 9.48 71.98 0.68 -2.47 16 2 C 0.16 3.31 2.57 44.99 0.12 3.43 16 3 H 0.06 1.60 7.58 -2.39 -0.02 1.58 16 4 C -0.11 -1.46 4.71 30.59 0.14 -1.31 16 5 C -0.09 -1.43 5.38 30.60 0.16 -1.27 16 6 C -0.15 -2.03 5.73 -10.79 -0.06 -2.09 16 7 C -0.18 -2.44 10.18 30.62 0.31 -2.13 16 8 C -0.19 -2.79 10.25 30.62 0.31 -2.48 16 9 N -0.73 -17.68 4.53 -457.81 -2.08 -19.76 16 10 C 0.70 24.55 8.53 179.06 1.53 26.08 16 11 O -0.64 -28.65 16.01 -4.00 -0.06 -28.72 16 12 N -0.73 -25.85 4.96 -478.52 -2.37 -28.22 16 13 C 0.17 7.45 4.50 86.38 0.39 7.84 16 14 C 0.05 2.49 0.50 -52.93 -0.03 2.46 16 15 C -0.12 -5.32 8.08 71.98 0.58 -4.74 16 16 C -0.12 -5.35 8.08 71.98 0.58 -4.77 16 17 C -0.53 -28.45 8.01 25.60 0.21 -28.24 16 18 H 0.04 2.39 7.74 -2.91 -0.02 2.37 16 19 C 0.03 1.52 5.15 84.65 0.44 1.95 16 20 N -0.90 -48.16 9.35 21.45 0.20 -47.96 16 21 Si 0.94 43.00 29.54 68.60 2.03 45.02 16 22 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 23 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 24 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 25 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.06 1.07 7.75 -2.39 -0.02 1.05 16 31 H 0.05 0.95 7.88 -2.39 -0.02 0.93 16 32 H 0.12 1.28 8.07 -2.39 -0.02 1.26 16 33 H 0.09 1.26 8.03 -2.39 -0.02 1.25 16 34 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 37 H 0.41 7.44 8.62 -92.70 -0.80 6.64 16 38 H 0.40 12.31 6.18 -92.71 -0.57 11.73 16 39 H 0.03 1.54 8.14 -2.38 -0.02 1.52 16 40 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.04 1.39 6.86 -2.39 -0.02 1.37 16 42 H 0.06 3.13 6.07 -2.39 -0.01 3.11 16 43 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.06 3.13 6.07 -2.39 -0.01 3.12 16 46 H 0.04 1.40 6.86 -2.39 -0.02 1.38 16 47 H 0.26 13.41 8.31 -92.71 -0.77 12.64 16 Total: -1.00 -63.76 370.61 2.64 -61.12 By element: Atomic # 1 Polarization: 26.68 SS G_CDS: -0.43 Total: 26.25 kcal Atomic # 6 Polarization: -13.09 SS G_CDS: 5.36 Total: -7.73 kcal Atomic # 7 Polarization: -91.69 SS G_CDS: -4.25 Total: -95.94 kcal Atomic # 8 Polarization: -28.65 SS G_CDS: -0.06 Total: -28.72 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.02 kcal Total: -63.76 2.64 -61.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458641749.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.280 kcal (2) G-P(sol) polarization free energy of solvation -63.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds