Wall clock time and date at job start Tue Mar 31 2020 06:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46504 * 109.47293 * 2 1 4 4 C 1.46500 * 119.99881 * 89.99716 * 3 2 1 5 5 C 1.53006 * 109.46998 * 270.00232 * 4 3 2 6 6 C 1.52999 * 109.46626 * 179.97438 * 5 4 3 7 7 C 1.52994 * 117.49977 * 243.74412 * 6 5 4 8 8 C 1.53000 * 117.49529 * 175.08553 * 6 5 4 9 9 C 1.34773 * 119.99970 * 270.00515 * 3 2 1 10 10 O 1.21593 * 120.00080 * 180.02562 * 9 3 2 11 11 N 1.34775 * 120.00437 * 359.97438 * 9 3 2 12 12 C 1.46496 * 120.00426 * 180.02562 * 11 9 3 13 13 C 1.53002 * 109.47421 * 180.02562 * 12 11 9 14 14 C 1.53008 * 109.46519 * 299.99639 * 13 12 11 15 15 C 1.52995 * 109.47336 * 59.99347 * 13 12 11 16 16 C 1.50691 * 109.47225 * 179.97438 * 13 12 11 17 17 H 1.08002 * 120.00045 * 359.97438 * 16 13 12 18 18 C 1.37879 * 120.00306 * 179.97438 * 16 13 12 19 19 N 1.31522 * 119.99734 * 0.02562 * 18 16 13 20 20 Si 1.86800 * 120.00410 * 179.97438 * 18 16 13 21 21 H 1.48498 * 109.47173 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47107 * 120.00366 * 20 18 16 23 23 H 1.48502 * 109.46769 * 240.00378 * 20 18 16 24 24 H 1.08994 * 109.47154 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47243 * 300.00194 * 1 2 3 26 26 H 1.09009 * 109.46781 * 60.00186 * 1 2 3 27 27 H 1.09003 * 109.46998 * 240.00412 * 2 1 3 28 28 H 1.08995 * 109.46933 * 119.99939 * 2 1 3 29 29 H 1.09000 * 109.47175 * 150.00363 * 4 3 2 30 30 H 1.09001 * 109.47297 * 29.99871 * 4 3 2 31 31 H 1.08993 * 109.46955 * 300.00226 * 5 4 3 32 32 H 1.09000 * 109.47050 * 60.00054 * 5 4 3 33 33 H 1.09000 * 115.55307 * 29.42251 * 6 5 4 34 34 H 1.09004 * 117.50018 * 0.02562 * 7 6 5 35 35 H 1.09002 * 117.49941 * 145.02738 * 7 6 5 36 36 H 1.09009 * 117.50302 * 214.98077 * 8 6 5 37 37 H 1.08997 * 117.50228 * 0.02562 * 8 6 5 38 38 H 0.97006 * 119.99620 * 0.02562 * 11 9 3 39 39 H 1.09004 * 109.46760 * 299.99930 * 12 11 9 40 40 H 1.08997 * 109.47121 * 59.99615 * 12 11 9 41 41 H 1.08996 * 109.47105 * 60.00042 * 14 13 12 42 42 H 1.09001 * 109.46625 * 180.02562 * 14 13 12 43 43 H 1.08997 * 109.46854 * 299.99434 * 14 13 12 44 44 H 1.09004 * 109.46941 * 60.00282 * 15 13 12 45 45 H 1.09003 * 109.47264 * 180.02562 * 15 13 12 46 46 H 1.09005 * 109.47434 * 300.00334 * 15 13 12 47 47 H 0.96997 * 120.00180 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 1.2687 5 6 0.9874 2.7931 1.7104 6 6 1.2423 3.5138 3.0357 7 6 0.4424 3.0528 4.2557 8 6 0.1187 4.3924 3.5895 9 6 2.2429 2.0166 -1.1672 10 8 2.6487 3.1628 -1.1672 11 7 2.0187 1.3812 -2.3344 12 6 2.2633 2.0716 -3.6031 13 6 1.9317 1.1344 -4.7661 14 6 2.8159 -0.1117 -4.6848 15 6 0.4606 0.7219 -4.6852 16 6 2.1827 1.8448 -6.0711 17 1 2.5424 2.8632 -6.0711 18 6 1.9532 1.1949 -7.2652 19 7 1.5147 -0.0451 -7.2653 20 14 2.2637 2.0758 -8.8829 21 1 2.7500 3.4524 -8.6116 22 1 3.2876 1.3341 -9.6619 23 1 1.0007 2.1409 -9.6613 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5138 0.8900 29 1 3.0644 2.7985 1.1384 30 1 2.5505 1.3452 2.0284 31 1 0.6994 3.5197 0.9507 32 1 0.1855 2.0664 1.8407 33 1 2.2677 3.8441 3.2017 34 1 -0.2652 2.2358 4.1143 35 1 0.9414 3.0802 5.2244 36 1 0.4050 5.3005 4.1201 37 1 -0.8021 4.4566 3.0098 38 1 1.6953 0.4666 -2.3344 39 1 1.6331 2.9591 -3.6611 40 1 3.3113 2.3658 -3.6605 41 1 2.6339 -0.6254 -3.7409 42 1 2.5800 -0.7792 -5.5136 43 1 3.8639 0.1822 -4.7425 44 1 -0.1693 1.6097 -4.7430 45 1 0.2245 0.0539 -5.5135 46 1 0.2786 0.2082 -3.7412 47 1 1.3529 -0.5023 -8.1053 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459230867.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:03 Heat of formation + Delta-G solvation = -17.868079 kcal Electronic energy + Delta-G solvation = -23196.833340 eV Core-core repulsion = 19994.224407 eV Total energy + Delta-G solvation = -3202.608933 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.96239 -37.82289 -36.54355 -35.61274 -33.34717 -31.57206 -30.69126 -29.33715 -25.70428 -25.65781 -25.00468 -23.45915 -23.05977 -22.52661 -20.55664 -19.49096 -18.82488 -17.82166 -16.15981 -15.91360 -15.75973 -14.98771 -14.77628 -14.40277 -14.26561 -13.95806 -13.54009 -13.38625 -13.25994 -12.87804 -12.49352 -12.26306 -12.15771 -11.99850 -11.73545 -11.47523 -11.38410 -11.34860 -11.18183 -10.88685 -10.82693 -10.63590 -10.49259 -10.35788 -10.18097 -9.98448 -9.64866 -9.60580 -9.26939 -8.75809 -8.63879 -8.38576 -8.08598 -6.00350 -4.09939 3.00067 3.28566 3.37127 3.42431 3.61660 3.68118 4.34006 4.46573 4.55580 4.75007 4.76890 4.88526 5.10319 5.16588 5.22989 5.26554 5.35464 5.43250 5.46914 5.57925 5.70841 5.71449 5.78773 5.91041 5.93707 6.04032 6.15410 6.25490 6.30621 6.40467 6.53483 6.72012 6.84098 6.84759 6.96096 7.05801 7.15217 7.31072 7.42743 7.58209 7.72022 8.03373 8.14907 8.40620 8.48676 8.90358 9.10044 9.55765 11.01163 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.031370 B = 0.003410 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.354054 B = 8209.075041 C = 8558.216398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.107 3.893 3 N -0.636 5.636 4 C 0.140 3.860 5 C -0.107 4.107 6 C -0.146 4.146 7 C -0.183 4.183 8 C -0.182 4.182 9 C 0.699 3.301 10 O -0.597 6.597 11 N -0.733 5.733 12 C 0.149 3.851 13 C 0.056 3.944 14 C -0.129 4.129 15 C -0.129 4.129 16 C -0.504 4.504 17 H 0.058 0.942 18 C 0.065 3.935 19 N -0.887 5.887 20 Si 0.893 3.107 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.285 1.285 24 H 0.065 0.935 25 H 0.058 0.942 26 H 0.061 0.939 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.105 0.895 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.393 0.607 39 H 0.051 0.949 40 H 0.051 0.949 41 H 0.004 0.996 42 H 0.085 0.915 43 H 0.026 0.974 44 H 0.026 0.974 45 H 0.085 0.915 46 H 0.004 0.996 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.539 -1.084 19.079 19.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.016 4.016 3 N -0.374 5.374 4 C 0.016 3.984 5 C -0.145 4.145 6 C -0.165 4.165 7 C -0.220 4.220 8 C -0.219 4.219 9 C 0.401 3.599 10 O -0.476 6.476 11 N -0.389 5.389 12 C 0.026 3.974 13 C 0.055 3.945 14 C -0.187 4.187 15 C -0.187 4.187 16 C -0.542 4.542 17 H 0.076 0.924 18 C -0.136 4.136 19 N -0.525 5.525 20 Si 0.721 3.279 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.211 1.211 24 H 0.084 0.916 25 H 0.077 0.923 26 H 0.080 0.920 27 H 0.093 0.907 28 H 0.095 0.905 29 H 0.100 0.900 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.123 0.877 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.230 0.770 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.023 0.977 42 H 0.104 0.896 43 H 0.046 0.954 44 H 0.045 0.955 45 H 0.103 0.897 46 H 0.023 0.977 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.271 -0.385 18.890 19.030 hybrid contribution -0.120 -0.042 -0.849 0.858 sum -2.391 -0.426 18.041 18.204 Atomic orbital electron populations 1.22317 0.96091 1.02180 1.02809 1.21460 0.94456 0.82919 1.02796 1.47191 1.71096 1.13974 1.05092 1.21210 0.97352 0.96301 0.83515 1.21660 0.98611 0.99235 0.95008 1.22253 0.97003 1.03044 0.94221 1.23044 1.03772 0.98216 0.96940 1.22956 1.00232 0.94496 1.04198 1.16032 0.78803 0.84565 0.80538 1.90872 1.53508 1.16873 1.86372 1.45661 1.70513 1.17583 1.05104 1.21573 0.99684 0.95580 0.80566 1.18358 0.92677 0.92031 0.91403 1.21818 0.98149 0.99756 0.98991 1.21812 0.97705 1.00127 0.99008 1.21036 1.44130 0.99333 0.89724 0.92353 1.24882 0.94851 0.94870 0.98953 1.69817 1.45818 1.10783 1.26120 0.86518 0.77792 0.79956 0.83643 1.19738 1.21094 1.21092 0.91641 0.92274 0.91984 0.90741 0.90495 0.89959 0.91070 0.90975 0.91730 0.87695 0.88953 0.89077 0.88953 0.88888 0.76996 0.93041 0.93035 0.97705 0.89624 0.95439 0.95485 0.89657 0.97658 0.93110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.79 10.24 37.16 0.38 -1.41 16 2 C 0.11 1.17 5.94 -4.04 -0.02 1.15 16 3 N -0.64 -8.87 2.47 -179.42 -0.44 -9.31 16 4 C 0.14 1.67 5.41 -4.04 -0.02 1.65 16 5 C -0.11 -1.19 5.82 -26.73 -0.16 -1.35 16 6 C -0.15 -1.39 5.73 -90.62 -0.52 -1.91 16 7 C -0.18 -1.47 10.18 -26.70 -0.27 -1.74 16 8 C -0.18 -1.61 10.25 -26.69 -0.27 -1.89 16 9 C 0.70 12.97 8.28 -86.92 -0.72 12.25 16 10 O -0.60 -13.28 15.92 5.28 0.08 -13.20 16 11 N -0.73 -13.71 4.82 -65.23 -0.31 -14.03 16 12 C 0.15 3.28 4.50 -4.04 -0.02 3.26 16 13 C 0.06 1.32 0.50 -155.66 -0.08 1.24 16 14 C -0.13 -2.95 8.08 37.16 0.30 -2.65 16 15 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 16 C -0.50 -13.33 8.01 -34.44 -0.28 -13.60 16 17 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 18 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 19 N -0.89 -23.69 9.35 55.43 0.52 -23.17 16 20 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 21 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.57 6.26 -51.93 -0.33 0.24 16 26 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 27 H 0.07 0.85 6.36 -51.93 -0.33 0.52 16 28 H 0.08 0.66 7.89 -51.93 -0.41 0.25 16 29 H 0.08 1.13 7.42 -51.93 -0.39 0.74 16 30 H 0.07 0.67 7.89 -51.93 -0.41 0.26 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.06 0.67 5.99 -51.93 -0.31 0.36 16 33 H 0.10 0.97 8.08 -51.93 -0.42 0.55 16 34 H 0.09 0.71 8.03 -51.93 -0.42 0.29 16 35 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.09 0.74 8.14 -51.92 -0.42 0.32 16 37 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.39 6.70 3.89 -40.82 -0.16 6.54 16 39 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 40 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 41 H 0.00 0.08 6.86 -51.93 -0.36 -0.28 16 42 H 0.09 2.14 6.07 -51.93 -0.32 1.83 16 43 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.08 2.13 6.07 -51.93 -0.32 1.82 16 46 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 47 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 LS Contribution 364.77 15.07 5.50 5.50 Total: -1.00 -29.12 364.77 -9.43 -38.55 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -8.28 Total: 5.83 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: -1.47 Total: -6.00 kcal Atomic # 7 Polarization: -46.27 SS G_CDS: -0.24 Total: -46.51 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: 0.08 Total: -13.20 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.12 -9.43 -38.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459230867.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.684 kcal (2) G-P(sol) polarization free energy of solvation -29.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds