Wall clock time and date at job start Tue Mar 31 2020 05:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46496 * 109.47510 * 2 1 4 4 C 1.34783 * 120.00278 * 275.60992 * 3 2 1 5 5 O 1.21582 * 120.00036 * 184.89704 * 4 3 2 6 6 N 1.34778 * 119.99775 * 4.90444 * 4 3 2 7 7 C 1.46495 * 120.00048 * 180.02562 * 6 4 3 8 8 C 1.52996 * 109.47571 * 179.97438 * 7 6 4 9 9 C 1.52997 * 109.47145 * 300.00178 * 8 7 6 10 10 C 1.53008 * 109.47019 * 59.99394 * 8 7 6 11 11 C 1.50693 * 109.47456 * 179.97438 * 8 7 6 12 12 H 1.07998 * 120.00553 * 2.89823 * 11 8 7 13 13 C 1.37879 * 119.99890 * 182.89742 * 11 8 7 14 14 N 1.31522 * 120.00080 * 188.50222 * 13 11 8 15 15 Si 1.86803 * 120.00178 * 8.50717 * 13 11 8 16 16 H 1.48504 * 109.47123 * 93.72284 * 15 13 11 17 17 H 1.48497 * 109.47058 * 213.72283 * 15 13 11 18 18 H 1.48497 * 109.46849 * 333.72199 * 15 13 11 19 19 C 1.46496 * 120.00030 * 95.60806 * 3 2 1 20 20 C 1.54273 * 110.03280 * 297.41056 * 19 3 2 21 21 C 1.54962 * 104.15884 * 95.75365 * 20 19 3 22 22 C 1.54885 * 102.77736 * 37.88748 * 21 20 19 23 23 C 1.53870 * 110.03507 * 54.62726 * 19 3 2 24 24 H 1.08992 * 109.47589 * 174.47328 * 1 2 3 25 25 H 1.09001 * 109.46869 * 294.47673 * 1 2 3 26 26 H 1.09006 * 109.47253 * 54.46872 * 1 2 3 27 27 H 1.09001 * 109.46965 * 240.00269 * 2 1 3 28 28 H 1.08993 * 109.47045 * 120.00404 * 2 1 3 29 29 H 0.96999 * 120.00002 * 359.97438 * 6 4 3 30 30 H 1.09009 * 109.47231 * 299.99596 * 7 6 4 31 31 H 1.08997 * 109.47216 * 59.99466 * 7 6 4 32 32 H 1.09007 * 109.47640 * 70.59186 * 9 8 7 33 33 H 1.09004 * 109.47540 * 190.59129 * 9 8 7 34 34 H 1.09000 * 109.46862 * 310.59097 * 9 8 7 35 35 H 1.09009 * 109.46639 * 60.00719 * 10 8 7 36 36 H 1.08992 * 109.47165 * 180.02562 * 10 8 7 37 37 H 1.08998 * 109.47468 * 300.00839 * 10 8 7 38 38 H 0.96994 * 120.00180 * 180.02562 * 14 13 11 39 39 H 1.08999 * 110.01817 * 176.02561 * 19 3 2 40 40 H 1.08999 * 110.48986 * 214.40105 * 20 19 3 41 41 H 1.08997 * 110.48435 * 337.04399 * 20 19 3 42 42 H 1.09008 * 110.72088 * 279.57642 * 21 20 19 43 43 H 1.09000 * 110.92515 * 156.29924 * 21 20 19 44 44 H 1.09000 * 110.48763 * 203.40688 * 22 21 20 45 45 H 1.09008 * 110.60054 * 80.81818 * 22 21 20 46 46 H 1.09001 * 110.02815 * 359.95397 * 23 19 3 47 47 H 1.08995 * 110.03267 * 121.38037 * 23 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1355 2.0546 -1.1616 5 8 2.6239 3.1680 -1.1723 6 7 1.7111 1.4938 -2.3114 7 6 1.8389 2.2255 -3.5741 8 6 1.2868 1.3711 -4.7169 9 6 2.0761 0.0633 -4.8032 10 6 -0.1882 1.0601 -4.4545 11 6 1.4177 2.1241 -6.0156 12 1 1.8936 3.0934 -6.0324 13 6 0.9298 1.5755 -7.1827 14 7 1.1891 2.1489 -8.3376 15 14 -0.0997 0.0178 -7.1236 16 1 -1.5397 0.3777 -7.0762 17 1 0.1670 -0.7980 -8.3354 18 1 0.2552 -0.7644 -5.9123 19 6 2.3795 2.0304 1.2626 20 6 1.1406 2.1359 2.1759 21 6 1.2435 0.8955 3.0991 22 6 2.7658 0.7919 3.3651 23 6 3.4123 1.1760 2.0182 24 1 -0.3634 -1.0228 -0.0990 25 1 -0.3633 0.4258 0.9353 26 1 -0.3634 0.5973 -0.8363 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.3217 0.6055 -2.3029 30 1 1.2768 3.1575 -3.5125 31 1 2.8896 2.4467 -3.7611 32 1 1.8325 -0.5654 -3.9466 33 1 1.8143 -0.4591 -5.7233 34 1 3.1438 0.2826 -4.8010 35 1 -0.7506 1.9919 -4.3931 36 1 -0.5814 0.4511 -5.2684 37 1 -0.2833 0.5157 -3.5150 38 1 0.8456 1.7632 -9.1585 39 1 2.7860 3.0230 1.0689 40 1 1.1770 3.0529 2.7639 41 1 0.2261 2.0971 1.5841 42 1 0.8789 0.0038 2.5890 43 1 0.6988 1.0564 4.0294 44 1 3.0364 -0.2273 3.6412 45 1 3.0672 1.4904 4.1458 46 1 3.6443 0.2779 1.4458 47 1 4.3202 1.7539 2.1910 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459231068.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:37 Heat of formation + Delta-G solvation = -23.047079 kcal Electronic energy + Delta-G solvation = -23983.186330 eV Core-core repulsion = 20780.352819 eV Total energy + Delta-G solvation = -3202.833511 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.41899 -38.23060 -36.61968 -34.89491 -33.06536 -31.38830 -30.81838 -28.91059 -27.70468 -26.38137 -25.68535 -24.73939 -23.35880 -21.06197 -20.71636 -19.30744 -18.96822 -17.96388 -16.59980 -16.05386 -15.55400 -15.26257 -15.21241 -14.78167 -14.13614 -13.91494 -13.83443 -13.44655 -13.28045 -12.97508 -12.67117 -12.54026 -12.24175 -12.17148 -12.05058 -11.73208 -11.61095 -11.39204 -11.34174 -11.23711 -11.10600 -10.77291 -10.68877 -10.38881 -10.24767 -10.18592 -10.05462 -9.68001 -9.05909 -8.70696 -8.61198 -8.51971 -8.22463 -6.11500 -4.10844 2.90513 3.24848 3.30995 3.38507 3.55349 4.25332 4.36732 4.45193 4.47896 4.69866 4.81277 5.10050 5.19710 5.20279 5.24169 5.33412 5.37636 5.41752 5.44912 5.56045 5.66647 5.70481 5.73166 5.78044 5.83555 5.96012 6.06309 6.10491 6.11307 6.14646 6.17575 6.36657 6.45896 6.56007 6.61843 6.73083 6.74642 6.85649 7.02925 7.21724 7.28631 7.45120 7.74044 8.31873 8.49279 8.92416 8.99167 9.51018 11.01685 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.033985 B = 0.004136 C = 0.003920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.686725 B = 6767.920577 C = 7140.926654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.104 3.896 3 N -0.626 5.626 4 C 0.701 3.299 5 O -0.596 6.596 6 N -0.737 5.737 7 C 0.159 3.841 8 C 0.028 3.972 9 C -0.140 4.140 10 C -0.145 4.145 11 C -0.509 4.509 12 H 0.077 0.923 13 C 0.073 3.927 14 N -0.895 5.895 15 Si 0.881 3.119 16 H -0.288 1.288 17 H -0.304 1.304 18 H -0.242 1.242 19 C 0.154 3.846 20 C -0.138 4.138 21 C -0.128 4.128 22 C -0.123 4.123 23 C -0.136 4.136 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.070 0.930 28 H 0.082 0.918 29 H 0.392 0.608 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.020 0.980 33 H 0.055 0.945 34 H 0.046 0.954 35 H 0.052 0.948 36 H 0.042 0.958 37 H 0.027 0.973 38 H 0.264 0.736 39 H 0.102 0.898 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.064 0.936 44 H 0.063 0.937 45 H 0.066 0.934 46 H 0.071 0.929 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.698 -7.426 22.386 23.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.019 4.019 3 N -0.364 5.364 4 C 0.403 3.597 5 O -0.474 6.474 6 N -0.393 5.393 7 C 0.036 3.964 8 C 0.026 3.974 9 C -0.197 4.197 10 C -0.202 4.202 11 C -0.547 4.547 12 H 0.095 0.905 13 C -0.129 4.129 14 N -0.533 5.533 15 Si 0.714 3.286 16 H -0.216 1.216 17 H -0.232 1.232 18 H -0.168 1.168 19 C 0.049 3.951 20 C -0.176 4.176 21 C -0.166 4.166 22 C -0.161 4.161 23 C -0.175 4.175 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.101 0.899 29 H 0.228 0.772 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.039 0.961 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.060 0.940 37 H 0.046 0.954 38 H 0.074 0.926 39 H 0.120 0.880 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.087 0.913 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.084 0.916 46 H 0.090 0.910 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.339 -6.581 22.120 23.081 hybrid contribution -0.892 -1.306 -0.212 1.596 sum -1.231 -7.888 21.908 23.317 Atomic orbital electron populations 1.22425 0.96124 1.02309 1.03099 1.21441 0.94353 0.83333 1.02806 1.47232 1.70107 1.13664 1.05391 1.16005 0.79151 0.84149 0.80411 1.90876 1.51338 1.19528 1.85680 1.45649 1.65768 1.21095 1.06764 1.21371 1.00799 0.94535 0.79728 1.18734 0.91117 0.93061 0.94447 1.22302 1.00232 0.97809 0.99376 1.22354 0.99329 1.00338 0.98137 1.20749 1.39319 1.05519 0.89083 0.90494 1.24992 0.95766 0.96947 0.95182 1.69922 1.44716 1.40892 0.97742 0.87378 0.80368 0.84451 0.76446 1.21556 1.23242 1.16775 1.21495 0.93861 0.97583 0.82122 1.22863 0.98778 0.98313 0.97693 1.22614 0.96172 0.98444 0.99324 1.22356 0.95398 1.01198 0.97159 1.22574 0.98535 1.00400 0.95956 0.91701 0.91735 0.91919 0.91177 0.89933 0.77197 0.92218 0.92200 0.96112 0.92638 0.93458 0.92842 0.94007 0.95377 0.92625 0.87984 0.90904 0.90730 0.91254 0.91722 0.91787 0.91558 0.91038 0.91145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.70 9.35 37.16 0.35 -1.35 16 2 C 0.10 1.05 4.53 -4.04 -0.02 1.03 16 3 N -0.63 -8.18 2.33 -170.53 -0.40 -8.58 16 4 C 0.70 12.29 8.23 -86.91 -0.72 11.57 16 5 O -0.60 -12.80 15.70 5.29 0.08 -12.71 16 6 N -0.74 -12.72 4.73 -65.23 -0.31 -13.03 16 7 C 0.16 3.29 4.48 -4.05 -0.02 3.27 16 8 C 0.03 0.61 0.50 -155.66 -0.08 0.53 16 9 C -0.14 -2.85 7.42 37.16 0.28 -2.58 16 10 C -0.14 -2.95 7.50 37.16 0.28 -2.67 16 11 C -0.51 -13.77 8.62 -34.44 -0.30 -14.07 16 12 H 0.08 2.30 7.99 -52.49 -0.42 1.88 16 13 C 0.07 2.05 5.39 -17.82 -0.10 1.95 16 14 N -0.90 -26.99 13.96 55.43 0.77 -26.21 16 15 Si 0.88 20.98 22.80 -169.99 -3.88 17.11 16 16 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 17 H -0.30 -7.41 7.11 56.52 0.40 -7.01 16 18 H -0.24 -5.18 4.35 56.52 0.25 -4.94 16 19 C 0.15 1.78 3.35 -66.81 -0.22 1.56 16 20 C -0.14 -1.30 5.82 -25.03 -0.15 -1.45 16 21 C -0.13 -0.95 6.19 -24.70 -0.15 -1.10 16 22 C -0.12 -0.90 6.83 -25.08 -0.17 -1.07 16 23 C -0.14 -1.26 5.94 -25.62 -0.15 -1.41 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.57 5.17 -51.93 -0.27 0.30 16 26 H 0.06 0.71 7.56 -51.93 -0.39 0.32 16 27 H 0.07 0.72 6.89 -51.93 -0.36 0.36 16 28 H 0.08 0.68 5.35 -51.93 -0.28 0.40 16 29 H 0.39 5.98 3.68 -40.82 -0.15 5.83 16 30 H 0.06 1.32 8.14 -51.92 -0.42 0.89 16 31 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 32 H 0.02 0.35 7.16 -51.93 -0.37 -0.02 16 33 H 0.05 1.20 4.19 -51.93 -0.22 0.98 16 34 H 0.05 0.96 8.11 -51.93 -0.42 0.53 16 35 H 0.05 1.10 8.14 -51.92 -0.42 0.67 16 36 H 0.04 0.90 2.32 -51.93 -0.12 0.77 16 37 H 0.03 0.48 6.86 -51.93 -0.36 0.12 16 38 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 39 H 0.10 1.43 6.95 -51.93 -0.36 1.07 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.07 0.78 6.22 -51.93 -0.32 0.45 16 42 H 0.07 0.50 5.67 -51.92 -0.29 0.20 16 43 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.07 0.45 8.14 -51.92 -0.42 0.03 16 46 H 0.07 0.68 6.73 -51.93 -0.35 0.33 16 47 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 334.68 15.07 5.04 5.04 Total: -1.00 -31.26 334.68 -7.63 -38.88 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -7.78 Total: 5.29 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: -1.17 Total: -5.79 kcal Atomic # 7 Polarization: -47.89 SS G_CDS: 0.07 Total: -47.82 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: 0.08 Total: -12.71 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -3.88 Total: 17.11 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.26 -7.63 -38.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459231068.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.835 kcal (2) G-P(sol) polarization free energy of solvation -31.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds