Wall clock time and date at job start Tue Mar 31 2020 05:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46494 * 109.47325 * 2 1 4 4 C 1.46493 * 120.00444 * 270.27624 * 3 2 1 5 5 C 1.53000 * 109.47637 * 269.72749 * 4 3 2 6 6 C 1.53780 * 113.61300 * 274.13789 * 5 4 3 7 7 C 1.53954 * 87.01864 * 220.04612 * 6 5 4 8 8 C 1.53775 * 113.61884 * 176.52589 * 5 4 3 9 9 C 1.34784 * 119.99635 * 90.00335 * 3 2 1 10 10 O 1.21588 * 119.99858 * 180.02562 * 9 3 2 11 11 N 1.34777 * 119.99964 * 0.02562 * 9 3 2 12 12 C 1.46496 * 119.99614 * 180.02562 * 11 9 3 13 13 C 1.52998 * 109.46851 * 179.97438 * 12 11 9 14 14 C 1.52998 * 109.47322 * 299.99616 * 13 12 11 15 15 C 1.53005 * 109.47179 * 60.00142 * 13 12 11 16 16 C 1.50706 * 109.47348 * 179.97438 * 13 12 11 17 17 H 1.08005 * 119.99758 * 0.02562 * 16 13 12 18 18 C 1.37871 * 120.00102 * 180.02562 * 16 13 12 19 19 N 1.31516 * 120.00213 * 0.02562 * 18 16 13 20 20 Si 1.86800 * 119.99763 * 179.97438 * 18 16 13 21 21 H 1.48494 * 109.47291 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.46819 * 120.00151 * 20 18 16 23 23 H 1.48500 * 109.47560 * 239.99651 * 20 18 16 24 24 H 1.08998 * 109.46465 * 299.99693 * 1 2 3 25 25 H 1.08993 * 109.47021 * 59.99589 * 1 2 3 26 26 H 1.08996 * 109.47055 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46903 * 240.00151 * 2 1 3 28 28 H 1.09004 * 109.47175 * 120.00822 * 2 1 3 29 29 H 1.09002 * 109.47192 * 29.72648 * 4 3 2 30 30 H 1.08996 * 109.47342 * 149.72358 * 4 3 2 31 31 H 1.09002 * 112.84694 * 45.32330 * 5 4 3 32 32 H 1.09002 * 113.61632 * 334.56468 * 6 5 4 33 33 H 1.08998 * 113.61758 * 105.46645 * 6 5 4 34 34 H 1.09006 * 113.53538 * 270.80699 * 7 6 5 35 35 H 1.09000 * 113.66778 * 139.93371 * 7 6 5 36 36 H 1.08997 * 113.61844 * 254.53287 * 8 5 4 37 37 H 1.09007 * 113.61364 * 25.35063 * 8 5 4 38 38 H 0.96996 * 119.99887 * 359.97438 * 11 9 3 39 39 H 1.09000 * 109.47287 * 299.99298 * 12 11 9 40 40 H 1.09002 * 109.47320 * 59.99900 * 12 11 9 41 41 H 1.09002 * 109.47051 * 60.00463 * 14 13 12 42 42 H 1.09005 * 109.47120 * 179.97438 * 14 13 12 43 43 H 1.08994 * 109.47233 * 300.00059 * 14 13 12 44 44 H 1.09000 * 109.47317 * 60.00013 * 15 13 12 45 45 H 1.08995 * 109.46937 * 180.02562 * 15 13 12 46 46 H 1.09002 * 109.46811 * 299.99946 * 15 13 12 47 47 H 0.96999 * 120.00124 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2568 2.0738 -1.2686 5 6 3.7018 1.8398 -1.7139 6 6 4.7025 2.8376 -1.1074 7 6 5.3899 2.8618 -2.4848 8 6 4.0323 2.4572 -3.0829 9 6 2.2431 2.0164 1.1673 10 8 2.6480 3.1629 1.1674 11 7 2.0190 1.3808 2.3345 12 6 2.2627 2.0715 3.6032 13 6 1.9314 1.1341 4.7660 14 6 0.4606 0.7207 4.6848 15 6 2.8165 -0.1114 4.6852 16 6 2.1827 1.8443 6.0712 17 1 2.5423 2.8628 6.0713 18 6 1.9535 1.1941 7.2652 19 7 1.5161 -0.0462 7.2651 20 14 2.2657 2.0743 8.8830 21 1 2.7516 3.4511 8.6117 22 1 1.0033 2.1400 9.6623 23 1 3.2896 1.3318 9.6611 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5140 0.8899 29 1 1.5759 1.6876 -2.0271 30 1 2.0857 3.1422 -1.1370 31 1 4.0108 0.7989 -1.6182 32 1 4.2535 3.7903 -0.8267 33 1 5.3204 2.4107 -0.3175 34 1 6.1619 2.1008 -2.5994 35 1 5.7234 3.8537 -2.7899 36 1 4.1098 1.7238 -3.8855 37 1 3.3987 3.3049 -3.3440 38 1 1.6956 0.4663 2.3344 39 1 3.3105 2.3664 3.6609 40 1 1.6319 2.9586 3.6610 41 1 0.2792 0.2067 3.7409 42 1 0.2247 0.0524 5.5131 43 1 -0.1699 1.6079 4.7425 44 1 3.8643 0.1831 4.7431 45 1 2.5801 -0.7794 5.5133 46 1 2.6351 -0.6253 3.7411 47 1 1.3545 -0.5035 8.1052 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459237713.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:37 Heat of formation + Delta-G solvation = -20.819445 kcal Electronic energy + Delta-G solvation = -23582.274307 eV Core-core repulsion = 20379.537393 eV Total energy + Delta-G solvation = -3202.736914 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.08191 -38.50218 -36.45457 -35.49741 -33.18988 -30.96383 -30.65324 -27.96271 -25.69890 -25.57326 -25.47961 -24.71841 -23.42122 -22.61356 -19.55846 -19.22912 -18.80210 -17.73299 -16.26289 -15.78963 -15.50479 -15.31816 -14.70685 -14.33945 -14.08723 -13.83374 -13.60940 -13.15482 -12.99137 -12.84573 -12.43683 -12.36673 -12.19970 -12.06301 -11.73913 -11.43567 -11.30217 -11.20302 -11.13410 -10.85411 -10.69325 -10.63368 -10.36683 -10.34833 -10.17881 -10.16139 -9.59918 -9.59438 -9.25727 -8.75182 -8.55606 -8.37613 -8.04439 -5.99869 -4.09459 3.03980 3.28774 3.37366 3.42640 3.71104 4.34446 4.46471 4.64633 4.69321 4.74109 4.90500 4.92223 5.18674 5.27031 5.30189 5.39318 5.46840 5.58334 5.68493 5.72497 5.78323 5.80740 5.84379 5.98407 6.15724 6.18024 6.24889 6.30080 6.41501 6.53865 6.54627 6.74138 6.85381 6.85739 6.97528 7.06515 7.17416 7.33903 7.44626 7.58795 7.72430 8.03853 8.15519 8.41419 8.51870 8.90858 9.14179 9.56255 11.01618 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025496 B = 0.003941 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.940402 B = 7102.950051 C = 7755.885500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.107 3.893 3 N -0.634 5.634 4 C 0.145 3.855 5 C -0.127 4.127 6 C -0.123 4.123 7 C -0.146 4.146 8 C -0.132 4.132 9 C 0.700 3.300 10 O -0.594 6.594 11 N -0.734 5.734 12 C 0.150 3.850 13 C 0.055 3.945 14 C -0.128 4.128 15 C -0.128 4.128 16 C -0.503 4.503 17 H 0.058 0.942 18 C 0.066 3.934 19 N -0.886 5.886 20 Si 0.892 3.108 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.285 1.285 24 H 0.061 0.939 25 H 0.056 0.944 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.060 0.940 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.080 0.920 38 H 0.393 0.607 39 H 0.051 0.949 40 H 0.051 0.949 41 H 0.004 0.996 42 H 0.084 0.916 43 H 0.026 0.974 44 H 0.026 0.974 45 H 0.085 0.915 46 H 0.004 0.996 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.760 -1.653 -18.198 18.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.017 4.017 3 N -0.372 5.372 4 C 0.022 3.978 5 C -0.147 4.147 6 C -0.160 4.160 7 C -0.184 4.184 8 C -0.170 4.170 9 C 0.401 3.599 10 O -0.473 6.473 11 N -0.390 5.390 12 C 0.027 3.973 13 C 0.055 3.945 14 C -0.186 4.186 15 C -0.186 4.186 16 C -0.542 4.542 17 H 0.076 0.924 18 C -0.135 4.135 19 N -0.525 5.525 20 Si 0.721 3.279 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.211 1.211 24 H 0.080 0.920 25 H 0.075 0.925 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.107 0.893 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.099 0.901 38 H 0.229 0.771 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.023 0.977 42 H 0.103 0.897 43 H 0.045 0.955 44 H 0.045 0.955 45 H 0.103 0.897 46 H 0.023 0.977 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.007 -0.941 -18.013 18.065 hybrid contribution -0.024 -0.167 0.914 0.930 sum 0.983 -1.107 -17.098 17.162 Atomic orbital electron populations 1.22238 0.96060 1.02161 1.02726 1.21428 0.94345 0.83165 1.02731 1.47164 1.70976 1.13945 1.05093 1.21253 0.94617 0.98293 0.83655 1.22971 0.96019 0.99509 0.96183 1.22889 0.97400 1.00110 0.95628 1.22877 0.96512 1.01245 0.97741 1.22859 0.97526 1.00544 0.96115 1.16012 0.78778 0.84596 0.80476 1.90853 1.53330 1.16832 1.86306 1.45652 1.70672 1.17530 1.05128 1.21550 0.99627 0.95532 0.80599 1.18365 0.92669 0.92053 0.91440 1.21805 0.97705 1.00110 0.98995 1.21808 0.98110 0.99739 0.98953 1.21036 1.44107 0.99316 0.89728 0.92374 1.24876 0.94860 0.94864 0.98939 1.69817 1.45868 1.10746 1.26104 0.86525 0.77795 0.79951 0.83670 1.19747 1.21101 1.21092 0.91971 0.92500 0.91616 0.90607 0.90810 0.91267 0.89929 0.89636 0.89310 0.92110 0.90695 0.91758 0.91832 0.90126 0.77074 0.93090 0.93093 0.97656 0.89689 0.95495 0.95484 0.89664 0.97743 0.93123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.78 10.24 37.16 0.38 -1.40 16 2 C 0.11 1.18 5.89 -4.04 -0.02 1.15 16 3 N -0.63 -8.80 2.47 -179.43 -0.44 -9.24 16 4 C 0.15 1.74 5.23 -4.05 -0.02 1.72 16 5 C -0.13 -1.41 3.96 -89.81 -0.36 -1.77 16 6 C -0.12 -1.58 7.01 -25.83 -0.18 -1.76 16 7 C -0.15 -1.47 8.09 -25.83 -0.21 -1.68 16 8 C -0.13 -1.21 7.65 -25.92 -0.20 -1.40 16 9 C 0.70 12.79 8.28 -86.91 -0.72 12.07 16 10 O -0.59 -12.78 14.99 5.29 0.08 -12.70 16 11 N -0.73 -13.68 4.82 -65.23 -0.31 -13.99 16 12 C 0.15 3.29 4.50 -4.04 -0.02 3.27 16 13 C 0.06 1.30 0.50 -155.66 -0.08 1.22 16 14 C -0.13 -2.92 8.08 37.16 0.30 -2.62 16 15 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 16 C -0.50 -13.31 8.01 -34.44 -0.28 -13.59 16 17 H 0.06 1.56 7.74 -52.48 -0.41 1.16 16 18 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 19 N -0.89 -23.70 9.35 55.43 0.52 -23.18 16 20 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 21 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.08 0.66 8.07 -51.93 -0.42 0.25 16 28 H 0.07 0.86 6.36 -51.93 -0.33 0.53 16 29 H 0.07 0.66 8.07 -51.93 -0.42 0.24 16 30 H 0.08 1.14 7.16 -51.93 -0.37 0.77 16 31 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.09 1.31 7.63 -51.93 -0.40 0.91 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.70 8.10 -51.93 -0.42 0.27 16 38 H 0.39 6.71 3.89 -40.82 -0.16 6.55 16 39 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 42 H 0.08 2.13 6.07 -51.93 -0.32 1.81 16 43 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.08 2.14 6.07 -51.93 -0.32 1.82 16 46 H 0.00 0.07 6.86 -51.93 -0.36 -0.28 16 47 H 0.26 6.66 8.31 -40.82 -0.34 6.33 16 LS Contribution 362.07 15.07 5.46 5.46 Total: -1.00 -28.57 362.07 -9.39 -37.96 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -8.47 Total: 5.64 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: -1.19 Total: -5.77 kcal Atomic # 7 Polarization: -46.18 SS G_CDS: -0.24 Total: -46.42 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: 0.08 Total: -12.70 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -28.57 -9.39 -37.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459237713.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.143 kcal (2) G-P(sol) polarization free energy of solvation -28.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds