Wall clock time and date at job start Tue Mar 31 2020 05:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46494 * 109.47325 * 2 1 4 4 C 1.46493 * 120.00444 * 270.27624 * 3 2 1 5 5 C 1.53000 * 109.47637 * 269.72749 * 4 3 2 6 6 C 1.53780 * 113.61300 * 274.13789 * 5 4 3 7 7 C 1.53954 * 87.01864 * 220.04612 * 6 5 4 8 8 C 1.53775 * 113.61884 * 176.52589 * 5 4 3 9 9 C 1.34784 * 119.99635 * 90.00335 * 3 2 1 10 10 O 1.21588 * 119.99858 * 180.02562 * 9 3 2 11 11 N 1.34777 * 119.99964 * 0.02562 * 9 3 2 12 12 C 1.46496 * 119.99614 * 180.02562 * 11 9 3 13 13 C 1.52998 * 109.46851 * 179.97438 * 12 11 9 14 14 C 1.52998 * 109.47322 * 299.99616 * 13 12 11 15 15 C 1.53005 * 109.47179 * 60.00142 * 13 12 11 16 16 C 1.50706 * 109.47348 * 179.97438 * 13 12 11 17 17 H 1.08005 * 119.99758 * 0.02562 * 16 13 12 18 18 C 1.37871 * 120.00102 * 180.02562 * 16 13 12 19 19 N 1.31516 * 120.00213 * 0.02562 * 18 16 13 20 20 Si 1.86800 * 119.99763 * 179.97438 * 18 16 13 21 21 H 1.48494 * 109.47291 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.46819 * 120.00151 * 20 18 16 23 23 H 1.48500 * 109.47560 * 239.99651 * 20 18 16 24 24 H 1.08998 * 109.46465 * 299.99693 * 1 2 3 25 25 H 1.08993 * 109.47021 * 59.99589 * 1 2 3 26 26 H 1.08996 * 109.47055 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46903 * 240.00151 * 2 1 3 28 28 H 1.09004 * 109.47175 * 120.00822 * 2 1 3 29 29 H 1.09002 * 109.47192 * 29.72648 * 4 3 2 30 30 H 1.08996 * 109.47342 * 149.72358 * 4 3 2 31 31 H 1.09002 * 112.84694 * 45.32330 * 5 4 3 32 32 H 1.09002 * 113.61632 * 334.56468 * 6 5 4 33 33 H 1.08998 * 113.61758 * 105.46645 * 6 5 4 34 34 H 1.09006 * 113.53538 * 270.80699 * 7 6 5 35 35 H 1.09000 * 113.66778 * 139.93371 * 7 6 5 36 36 H 1.08997 * 113.61844 * 254.53287 * 8 5 4 37 37 H 1.09007 * 113.61364 * 25.35063 * 8 5 4 38 38 H 0.96996 * 119.99887 * 359.97438 * 11 9 3 39 39 H 1.09000 * 109.47287 * 299.99298 * 12 11 9 40 40 H 1.09002 * 109.47320 * 59.99900 * 12 11 9 41 41 H 1.09002 * 109.47051 * 60.00463 * 14 13 12 42 42 H 1.09005 * 109.47120 * 179.97438 * 14 13 12 43 43 H 1.08994 * 109.47233 * 300.00059 * 14 13 12 44 44 H 1.09000 * 109.47317 * 60.00013 * 15 13 12 45 45 H 1.08995 * 109.46937 * 180.02562 * 15 13 12 46 46 H 1.09002 * 109.46811 * 299.99946 * 15 13 12 47 47 H 0.96999 * 120.00124 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2568 2.0738 -1.2686 5 6 3.7018 1.8398 -1.7139 6 6 4.7025 2.8376 -1.1074 7 6 5.3899 2.8618 -2.4848 8 6 4.0323 2.4572 -3.0829 9 6 2.2431 2.0164 1.1673 10 8 2.6480 3.1629 1.1674 11 7 2.0190 1.3808 2.3345 12 6 2.2627 2.0715 3.6032 13 6 1.9314 1.1341 4.7660 14 6 0.4606 0.7207 4.6848 15 6 2.8165 -0.1114 4.6852 16 6 2.1827 1.8443 6.0712 17 1 2.5423 2.8628 6.0713 18 6 1.9535 1.1941 7.2652 19 7 1.5161 -0.0462 7.2651 20 14 2.2657 2.0743 8.8830 21 1 2.7516 3.4511 8.6117 22 1 1.0033 2.1400 9.6623 23 1 3.2896 1.3318 9.6611 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5140 0.8899 29 1 1.5759 1.6876 -2.0271 30 1 2.0857 3.1422 -1.1370 31 1 4.0108 0.7989 -1.6182 32 1 4.2535 3.7903 -0.8267 33 1 5.3204 2.4107 -0.3175 34 1 6.1619 2.1008 -2.5994 35 1 5.7234 3.8537 -2.7899 36 1 4.1098 1.7238 -3.8855 37 1 3.3987 3.3049 -3.3440 38 1 1.6956 0.4663 2.3344 39 1 3.3105 2.3664 3.6609 40 1 1.6319 2.9586 3.6610 41 1 0.2792 0.2067 3.7409 42 1 0.2247 0.0524 5.5131 43 1 -0.1699 1.6079 4.7425 44 1 3.8643 0.1831 4.7431 45 1 2.5801 -0.7794 5.5133 46 1 2.6351 -0.6253 3.7411 47 1 1.3545 -0.5035 8.1052 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459237713.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:36 Heat of formation + Delta-G solvation = -35.135997 kcal Electronic energy + Delta-G solvation = -23582.895119 eV Core-core repulsion = 20379.537393 eV Total energy + Delta-G solvation = -3203.357726 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.37782 -39.55678 -38.15969 -36.75291 -34.93149 -32.68354 -31.73020 -29.09637 -27.57552 -27.41434 -26.51921 -26.32869 -24.33016 -23.74352 -20.90065 -20.61268 -20.17219 -19.03412 -17.82436 -17.40724 -16.72512 -16.63382 -16.27730 -15.52493 -15.45770 -15.19507 -14.77896 -14.70286 -14.52397 -14.06155 -13.87061 -13.61880 -13.28445 -13.18921 -13.11658 -12.95766 -12.70741 -12.59695 -12.56953 -12.30345 -12.24064 -12.14706 -12.03491 -11.58072 -11.48988 -11.29117 -11.24433 -11.04012 -10.98174 -10.70150 -10.39974 -10.00926 -9.35451 -8.02344 -6.17838 1.41335 1.45300 1.54975 1.80692 2.27074 2.46115 3.11351 3.21201 3.74294 3.84142 3.86913 4.02562 4.07861 4.32822 4.37420 4.49847 4.50681 4.53601 4.59456 4.70320 4.75148 4.88494 4.89815 4.94117 4.95592 5.00819 5.04366 5.05663 5.10291 5.11322 5.15782 5.19143 5.36687 5.39001 5.40622 5.62414 5.66475 5.66682 5.67607 5.73912 6.06296 6.14174 6.21430 6.43859 6.86114 7.11033 7.49866 7.70229 8.96963 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025496 B = 0.003941 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.940402 B = 7102.950051 C = 7755.885500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.101 3.899 3 N -0.625 5.625 4 C 0.142 3.858 5 C -0.123 4.123 6 C -0.138 4.138 7 C -0.139 4.139 8 C -0.117 4.117 9 C 0.694 3.306 10 O -0.634 6.634 11 N -0.729 5.729 12 C 0.169 3.831 13 C 0.052 3.948 14 C -0.116 4.116 15 C -0.117 4.117 16 C -0.528 4.528 17 H 0.043 0.957 18 C 0.029 3.971 19 N -0.899 5.899 20 Si 0.945 3.055 21 H -0.277 1.277 22 H -0.280 1.280 23 H -0.280 1.280 24 H 0.035 0.965 25 H 0.066 0.934 26 H 0.087 0.913 27 H 0.110 0.890 28 H 0.068 0.932 29 H 0.105 0.895 30 H 0.059 0.941 31 H 0.093 0.907 32 H 0.061 0.939 33 H 0.034 0.966 34 H 0.085 0.915 35 H 0.068 0.932 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.402 0.598 39 H 0.031 0.969 40 H 0.032 0.968 41 H 0.033 0.967 42 H 0.063 0.937 43 H 0.016 0.984 44 H 0.016 0.984 45 H 0.064 0.936 46 H 0.033 0.967 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.361 -3.140 -20.428 20.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.021 4.021 3 N -0.361 5.361 4 C 0.019 3.981 5 C -0.142 4.142 6 C -0.175 4.175 7 C -0.177 4.177 8 C -0.155 4.155 9 C 0.396 3.604 10 O -0.515 6.515 11 N -0.386 5.386 12 C 0.044 3.956 13 C 0.051 3.949 14 C -0.174 4.174 15 C -0.174 4.174 16 C -0.567 4.567 17 H 0.061 0.939 18 C -0.170 4.170 19 N -0.537 5.537 20 Si 0.772 3.228 21 H -0.201 1.201 22 H -0.206 1.206 23 H -0.206 1.206 24 H 0.054 0.946 25 H 0.085 0.915 26 H 0.106 0.894 27 H 0.128 0.872 28 H 0.086 0.914 29 H 0.124 0.876 30 H 0.077 0.923 31 H 0.111 0.889 32 H 0.080 0.920 33 H 0.053 0.947 34 H 0.103 0.897 35 H 0.087 0.913 36 H 0.106 0.894 37 H 0.104 0.896 38 H 0.240 0.760 39 H 0.049 0.951 40 H 0.050 0.950 41 H 0.052 0.948 42 H 0.082 0.918 43 H 0.035 0.965 44 H 0.035 0.965 45 H 0.083 0.917 46 H 0.051 0.949 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.592 -2.471 -20.284 20.442 hybrid contribution 0.105 0.298 1.573 1.604 sum 0.697 -2.173 -18.711 18.850 Atomic orbital electron populations 1.22196 0.95209 1.03355 1.01906 1.21713 0.94972 0.81291 1.04155 1.47243 1.69708 1.15037 1.04135 1.21444 0.96135 0.97124 0.83353 1.22965 0.94677 0.99329 0.97241 1.22873 0.98584 0.99457 0.96615 1.22873 0.97421 1.02004 0.95366 1.22796 0.96311 1.00975 0.95378 1.16209 0.78557 0.84253 0.81403 1.90831 1.54961 1.18724 1.87010 1.45368 1.71112 1.17749 1.04356 1.21073 0.97876 0.94806 0.81854 1.18358 0.93352 0.92344 0.90823 1.21628 0.96811 0.99359 0.99609 1.21634 0.97212 0.99015 0.99586 1.21288 1.44725 0.99080 0.91582 0.93891 1.25437 0.94749 0.95542 1.01319 1.69909 1.45832 1.11289 1.26713 0.85701 0.77736 0.78789 0.80547 1.20137 1.20623 1.20627 0.94573 0.91538 0.89411 0.87205 0.91372 0.87650 0.92281 0.88883 0.91999 0.94742 0.89662 0.91302 0.89442 0.89593 0.75973 0.95065 0.94996 0.94789 0.91770 0.96465 0.96477 0.91738 0.94851 0.92994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.93 10.24 71.98 0.74 -2.19 16 2 C 0.10 1.90 5.89 86.38 0.51 2.41 16 3 N -0.62 -16.37 2.47 -839.84 -2.08 -18.45 16 4 C 0.14 3.12 5.23 86.38 0.45 3.57 16 5 C -0.12 -2.48 3.96 -10.27 -0.04 -2.52 16 6 C -0.14 -3.59 7.01 31.18 0.22 -3.37 16 7 C -0.14 -2.57 8.09 31.18 0.25 -2.32 16 8 C -0.12 -1.77 7.65 31.12 0.24 -1.54 16 9 C 0.69 25.45 8.28 179.05 1.48 26.93 16 10 O -0.63 -28.21 14.99 -3.99 -0.06 -28.27 16 11 N -0.73 -27.11 4.82 -478.54 -2.31 -29.42 16 12 C 0.17 7.60 4.50 86.38 0.39 7.99 16 13 C 0.05 2.47 0.50 -52.93 -0.03 2.44 16 14 C -0.12 -5.28 8.08 71.98 0.58 -4.70 16 15 C -0.12 -5.30 8.08 71.98 0.58 -4.72 16 16 C -0.53 -28.56 8.01 25.60 0.21 -28.36 16 17 H 0.04 2.39 7.74 -2.91 -0.02 2.37 16 18 C 0.03 1.56 5.15 84.65 0.44 1.99 16 19 N -0.90 -48.16 9.35 21.45 0.20 -47.96 16 20 Si 0.95 43.11 29.54 68.60 2.03 45.14 16 21 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 22 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 23 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 24 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.11 1.40 8.07 -2.39 -0.02 1.38 16 28 H 0.07 1.39 6.36 -2.38 -0.02 1.37 16 29 H 0.11 1.58 8.07 -2.39 -0.02 1.56 16 30 H 0.06 1.61 7.16 -2.39 -0.02 1.59 16 31 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.06 1.93 7.63 -2.39 -0.02 1.91 16 33 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 35 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.09 1.24 8.10 -2.38 -0.02 1.22 16 38 H 0.40 13.23 3.89 -92.71 -0.36 12.87 16 39 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.03 1.30 6.86 -2.39 -0.02 1.28 16 42 H 0.06 3.20 6.07 -2.38 -0.01 3.19 16 43 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.06 3.22 6.07 -2.39 -0.01 3.21 16 46 H 0.03 1.27 6.86 -2.39 -0.02 1.26 16 47 H 0.26 13.37 8.31 -92.71 -0.77 12.60 16 Total: -1.00 -63.70 362.07 4.36 -59.35 By element: Atomic # 1 Polarization: 23.43 SS G_CDS: 0.56 Total: 23.99 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: 6.01 Total: -4.37 kcal Atomic # 7 Polarization: -91.64 SS G_CDS: -4.18 Total: -95.83 kcal Atomic # 8 Polarization: -28.21 SS G_CDS: -0.06 Total: -28.27 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -63.70 4.36 -59.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459237713.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.209 kcal (2) G-P(sol) polarization free energy of solvation -63.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds