Wall clock time and date at job start Tue Mar 31 2020 05:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47143 * 2 1 4 4 N 1.46500 * 109.46801 * 120.00286 * 2 1 3 5 5 C 1.46495 * 120.00593 * 54.70068 * 4 2 1 6 6 C 1.34785 * 119.99604 * 234.70292 * 4 2 1 7 7 O 1.21585 * 119.99903 * 359.97438 * 6 4 2 8 8 N 1.34774 * 119.99662 * 180.02562 * 6 4 2 9 9 C 1.46509 * 119.99814 * 179.97438 * 8 6 4 10 10 C 1.52995 * 109.47026 * 179.97438 * 9 8 6 11 11 C 1.53000 * 109.47241 * 299.99427 * 10 9 8 12 12 C 1.52999 * 109.47303 * 60.00240 * 10 9 8 13 13 C 1.50703 * 109.46990 * 179.97438 * 10 9 8 14 14 H 1.08002 * 119.99840 * 0.02562 * 13 10 9 15 15 C 1.37867 * 120.00229 * 179.97438 * 13 10 9 16 16 N 1.31516 * 120.00060 * 0.02562 * 15 13 10 17 17 Si 1.86800 * 120.00179 * 180.02562 * 15 13 10 18 18 H 1.48497 * 109.47071 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.47237 * 120.00218 * 17 15 13 20 20 H 1.48503 * 109.47039 * 240.00015 * 17 15 13 21 21 C 1.53003 * 109.47003 * 239.99505 * 2 1 3 22 22 C 1.53000 * 115.54883 * 160.08754 * 21 2 1 23 23 C 1.52996 * 117.49861 * 14.38295 * 21 2 1 24 24 C 1.52997 * 117.50099 * 305.75876 * 21 2 1 25 25 H 1.09005 * 109.47555 * 300.00373 * 1 2 3 26 26 H 1.09004 * 109.47219 * 59.99947 * 1 2 3 27 27 H 1.09008 * 109.47580 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47141 * 85.41748 * 5 4 2 29 29 H 1.09004 * 109.47476 * 205.42588 * 5 4 2 30 30 H 1.09007 * 109.46952 * 325.41492 * 5 4 2 31 31 H 0.96997 * 120.00525 * 359.97438 * 8 6 4 32 32 H 1.09004 * 109.46624 * 299.99735 * 9 8 6 33 33 H 1.09001 * 109.47195 * 59.99401 * 9 8 6 34 34 H 1.09001 * 109.46575 * 60.00603 * 11 10 9 35 35 H 1.09001 * 109.46968 * 179.97438 * 11 10 9 36 36 H 1.09001 * 109.47132 * 300.00536 * 11 10 9 37 37 H 1.08996 * 109.47280 * 59.99586 * 12 10 9 38 38 H 1.08995 * 109.46886 * 180.02562 * 12 10 9 39 39 H 1.09003 * 109.46406 * 299.99669 * 12 10 9 40 40 H 0.97001 * 120.00386 * 180.02562 * 16 15 13 41 41 H 1.09000 * 109.46963 * 64.96897 * 22 21 2 42 42 H 1.08995 * 109.47384 * 184.97492 * 22 21 2 43 43 H 1.09004 * 109.46630 * 304.97683 * 22 21 2 44 44 H 1.09000 * 117.50121 * 359.97438 * 23 21 2 45 45 H 1.08997 * 117.50071 * 145.01689 * 23 21 2 46 46 H 1.08996 * 117.49813 * 214.97912 * 24 21 2 47 47 H 1.09000 * 117.50020 * 359.97438 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6907 1.1962 5 6 1.5712 -2.0549 1.4882 6 6 2.8787 -0.0709 2.0281 7 8 3.2500 1.0612 1.7855 8 7 3.3283 -0.7065 3.1282 9 6 4.2641 -0.0330 4.0322 10 6 4.6130 -0.9666 5.1930 11 6 3.3379 -1.3293 5.9568 12 6 5.2599 -2.2407 4.6461 13 6 5.5761 -0.2741 6.1225 14 1 5.9059 0.7315 5.9071 15 6 6.0354 -0.9238 7.2485 16 7 5.6334 -2.1482 7.5111 17 14 7.2286 -0.0652 8.4010 18 1 7.5221 1.2960 7.8852 19 1 6.6232 0.0382 9.7531 20 1 8.4885 -0.8470 8.4813 21 6 2.0399 -0.7214 -1.2492 22 6 3.4835 -0.4090 -1.6484 23 6 1.0360 -0.9816 -2.3740 24 6 1.5277 -2.1403 -1.5042 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 2.2025 -2.7659 0.9554 29 1 1.6416 -2.2387 2.5603 30 1 0.5367 -2.1750 1.1662 31 1 3.0324 -1.6097 3.3216 32 1 5.1724 0.2258 3.4879 33 1 3.8032 0.8745 4.4222 34 1 2.6417 -1.8304 5.2843 35 1 3.5865 -1.9949 6.7835 36 1 2.8771 -0.4216 6.3464 37 1 6.1683 -1.9822 4.1019 38 1 5.5081 -2.9060 5.4730 39 1 4.5636 -2.7417 3.9735 40 1 5.9561 -2.6053 8.3034 41 1 4.1608 -0.7705 -0.8746 42 1 3.7142 -0.9022 -2.5927 43 1 3.6039 0.6683 -1.7623 44 1 0.0121 -0.6393 -2.2239 45 1 1.4038 -0.9302 -3.3988 46 1 2.2190 -2.8512 -1.9568 47 1 0.8277 -2.5602 -0.7818 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459252138.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:12 Heat of formation + Delta-G solvation = -5.429369 kcal Electronic energy + Delta-G solvation = -23683.526508 eV Core-core repulsion = 20481.456958 eV Total energy + Delta-G solvation = -3202.069550 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.29917 -38.52659 -36.35608 -34.79007 -33.23878 -31.11122 -30.02823 -28.98807 -26.73903 -25.70070 -25.58341 -24.88704 -23.24394 -22.43727 -20.05453 -18.85100 -18.45358 -17.83294 -16.23606 -15.99495 -15.62358 -15.25101 -14.70281 -14.25525 -14.04990 -13.58282 -13.50036 -13.09087 -12.89926 -12.85359 -12.65067 -12.44052 -12.34311 -12.14960 -11.92585 -11.48826 -11.37391 -11.33978 -11.17542 -11.09863 -10.85325 -10.63631 -10.36022 -10.24776 -10.18306 -9.97657 -9.60405 -9.54561 -9.25463 -8.75521 -8.58704 -8.38061 -8.06995 -6.00038 -4.09678 2.93061 3.28749 3.37307 3.42524 3.65252 3.76188 4.36406 4.47026 4.57120 4.68068 4.77263 4.84119 5.08949 5.19356 5.25750 5.26864 5.48880 5.50450 5.54720 5.67908 5.69799 5.77956 5.80266 5.94787 5.95728 6.00929 6.13050 6.21594 6.27690 6.40708 6.53651 6.71784 6.84602 6.85000 6.96576 7.06143 7.15393 7.32289 7.43397 7.58500 7.72224 8.03547 8.15122 8.40828 8.49184 8.90551 9.10193 9.56045 11.01455 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.034802 B = 0.003638 C = 0.003586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.353014 B = 7694.336446 C = 7806.298871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.190 3.810 3 H 0.106 0.894 4 N -0.628 5.628 5 C 0.079 3.921 6 C 0.700 3.300 7 O -0.599 6.599 8 N -0.733 5.733 9 C 0.150 3.850 10 C 0.055 3.945 11 C -0.129 4.129 12 C -0.128 4.128 13 C -0.503 4.503 14 H 0.058 0.942 15 C 0.066 3.934 16 N -0.886 5.886 17 Si 0.893 3.107 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.285 1.285 21 C -0.134 4.134 22 C -0.109 4.109 23 C -0.175 4.175 24 C -0.175 4.175 25 H 0.061 0.939 26 H 0.070 0.930 27 H 0.059 0.941 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.393 0.607 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.004 0.996 35 H 0.085 0.915 36 H 0.026 0.974 37 H 0.026 0.974 38 H 0.085 0.915 39 H 0.004 0.996 40 H 0.259 0.741 41 H 0.060 0.940 42 H 0.052 0.948 43 H 0.060 0.940 44 H 0.099 0.901 45 H 0.091 0.909 46 H 0.091 0.909 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.540 -2.340 -15.843 19.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.086 3.914 3 H 0.123 0.877 4 N -0.365 5.365 5 C -0.065 4.065 6 C 0.401 3.599 7 O -0.478 6.478 8 N -0.389 5.389 9 C 0.026 3.974 10 C 0.055 3.945 11 C -0.186 4.186 12 C -0.186 4.186 13 C -0.542 4.542 14 H 0.076 0.924 15 C -0.135 4.135 16 N -0.525 5.525 17 Si 0.721 3.279 18 H -0.197 1.197 19 H -0.211 1.211 20 H -0.211 1.211 21 C -0.136 4.136 22 C -0.166 4.166 23 C -0.213 4.213 24 C -0.212 4.212 25 H 0.080 0.920 26 H 0.089 0.911 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.230 0.770 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.023 0.977 35 H 0.103 0.897 36 H 0.045 0.955 37 H 0.045 0.955 38 H 0.103 0.897 39 H 0.023 0.977 40 H 0.069 0.931 41 H 0.079 0.921 42 H 0.071 0.929 43 H 0.079 0.921 44 H 0.118 0.882 45 H 0.110 0.890 46 H 0.109 0.891 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -10.203 -1.643 -15.823 18.899 hybrid contribution 0.496 -0.208 0.744 0.918 sum -9.707 -1.851 -15.079 18.029 Atomic orbital electron populations 1.22274 0.95433 1.02133 1.02474 1.20230 0.92770 0.97128 0.81267 0.87652 1.46986 1.48761 1.15652 1.25135 1.21749 0.99990 0.83630 1.01109 1.16011 0.79179 0.84439 0.80229 1.90856 1.62909 1.18062 1.75974 1.45666 1.49654 1.19091 1.24468 1.21572 0.90063 0.95804 0.89912 1.18368 0.93778 0.92035 0.90362 1.21810 0.95743 1.00146 1.00929 1.21806 0.97484 0.99704 0.99625 1.21032 1.25761 1.00618 1.06788 0.92358 1.24877 0.96287 0.94864 0.97520 1.69816 1.44275 1.11579 1.26859 0.86520 0.80860 0.79848 0.80691 1.19741 1.21099 1.21088 1.21901 0.95761 0.99041 0.96848 1.21230 0.93235 1.01709 1.00456 1.23214 0.99341 1.03145 0.95564 1.23101 1.03725 0.91252 1.03118 0.91997 0.91148 0.92257 0.92715 0.91461 0.91353 0.76980 0.93027 0.93048 0.97717 0.89653 0.95464 0.95473 0.89676 0.97669 0.93117 0.92145 0.92934 0.92058 0.88229 0.89046 0.89067 0.88589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.59 7.71 37.16 0.29 -1.30 16 2 C 0.19 2.35 2.79 -67.93 -0.19 2.17 16 3 H 0.11 1.57 6.90 -51.93 -0.36 1.22 16 4 N -0.63 -8.85 2.76 -179.67 -0.50 -9.35 16 5 C 0.08 0.87 8.38 59.84 0.50 1.37 16 6 C 0.70 13.01 8.28 -86.91 -0.72 12.29 16 7 O -0.60 -13.26 15.68 5.29 0.08 -13.18 16 8 N -0.73 -13.75 4.83 -65.22 -0.31 -14.07 16 9 C 0.15 3.29 4.50 -4.04 -0.02 3.28 16 10 C 0.06 1.30 0.50 -155.66 -0.08 1.22 16 11 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 12 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 13 C -0.50 -13.32 8.01 -34.44 -0.28 -13.60 16 14 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 15 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 16 N -0.89 -23.70 9.35 55.43 0.52 -23.18 16 17 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 18 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 C -0.13 -1.43 2.28 -154.51 -0.35 -1.78 16 22 C -0.11 -1.27 9.72 37.16 0.36 -0.91 16 23 C -0.18 -1.46 9.35 -26.73 -0.25 -1.71 16 24 C -0.17 -1.56 8.20 -26.73 -0.22 -1.78 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.07 0.57 6.71 -51.93 -0.35 0.22 16 27 H 0.06 0.50 5.43 -51.92 -0.28 0.22 16 28 H 0.05 0.57 7.41 -51.93 -0.39 0.18 16 29 H 0.07 0.76 6.13 -51.93 -0.32 0.45 16 30 H 0.07 0.60 5.43 -51.93 -0.28 0.32 16 31 H 0.39 6.71 3.80 -40.82 -0.16 6.56 16 32 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.00 0.08 6.86 -51.93 -0.36 -0.28 16 35 H 0.08 2.14 6.07 -51.93 -0.32 1.82 16 36 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.08 2.14 6.07 -51.93 -0.32 1.82 16 39 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 40 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 41 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.05 0.52 8.09 -51.93 -0.42 0.10 16 43 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.10 0.74 5.89 -51.93 -0.31 0.43 16 45 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 46 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 47 H 0.10 0.79 5.32 -51.93 -0.28 0.52 16 LS Contribution 350.85 15.07 5.29 5.29 Total: -1.00 -28.97 350.85 -8.21 -37.18 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -7.82 Total: 5.85 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: -0.45 Total: -4.37 kcal Atomic # 7 Polarization: -46.31 SS G_CDS: -0.29 Total: -46.60 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: 0.08 Total: -13.18 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -28.97 -8.21 -37.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459252138.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.749 kcal (2) G-P(sol) polarization free energy of solvation -28.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds