Wall clock time and date at job start Tue Mar 31 2020 05:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.47259 * 2 1 4 4 N 1.46499 * 109.47533 * 239.99744 * 2 1 3 5 5 C 1.46504 * 119.99783 * 352.66866 * 4 2 1 6 6 C 1.34778 * 120.00072 * 172.66340 * 4 2 1 7 7 O 1.21583 * 119.99912 * 0.02562 * 6 4 2 8 8 N 1.34779 * 119.99817 * 179.97438 * 6 4 2 9 9 C 1.46495 * 119.99986 * 180.02562 * 8 6 4 10 10 C 1.53001 * 109.47514 * 180.02562 * 9 8 6 11 11 C 1.53001 * 109.46588 * 300.00071 * 10 9 8 12 12 C 1.52998 * 109.46753 * 59.99517 * 10 9 8 13 13 C 1.50694 * 109.47277 * 180.02562 * 10 9 8 14 14 H 1.08000 * 120.00206 * 359.97438 * 13 10 9 15 15 C 1.37885 * 119.99832 * 179.97438 * 13 10 9 16 16 N 1.31515 * 119.99658 * 359.97438 * 15 13 10 17 17 Si 1.86797 * 119.99980 * 179.97438 * 15 13 10 18 18 H 1.48509 * 109.47018 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47313 * 119.99877 * 17 15 13 20 20 H 1.48497 * 109.47126 * 240.00226 * 17 15 13 21 21 C 1.53001 * 109.47098 * 119.99707 * 2 1 3 22 22 C 1.52997 * 115.54860 * 65.53684 * 21 2 1 23 23 C 1.53002 * 117.49890 * 211.20908 * 21 2 1 24 24 C 1.52999 * 117.49856 * 279.86647 * 21 2 1 25 25 H 1.08994 * 109.47200 * 300.00370 * 1 2 3 26 26 H 1.09006 * 109.47065 * 60.00404 * 1 2 3 27 27 H 1.09001 * 109.47220 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47106 * 85.32451 * 5 4 2 29 29 H 1.09002 * 109.46846 * 205.31805 * 5 4 2 30 30 H 1.08998 * 109.46829 * 325.32090 * 5 4 2 31 31 H 0.96994 * 120.00131 * 0.02562 * 8 6 4 32 32 H 1.09002 * 109.47318 * 300.00397 * 9 8 6 33 33 H 1.09001 * 109.47090 * 59.99884 * 9 8 6 34 34 H 1.08994 * 109.47542 * 59.99856 * 11 10 9 35 35 H 1.09008 * 109.46983 * 180.02562 * 11 10 9 36 36 H 1.09001 * 109.47038 * 299.99780 * 11 10 9 37 37 H 1.08999 * 109.47267 * 60.01199 * 12 10 9 38 38 H 1.09008 * 109.46488 * 180.02562 * 12 10 9 39 39 H 1.08994 * 109.47431 * 300.00177 * 12 10 9 40 40 H 0.97006 * 119.99151 * 179.97438 * 16 15 13 41 41 H 1.08999 * 109.47166 * 55.27522 * 22 21 2 42 42 H 1.09004 * 109.46984 * 175.27710 * 22 21 2 43 43 H 1.08996 * 109.46990 * 295.27141 * 22 21 2 44 44 H 1.08997 * 117.49588 * 215.00435 * 23 21 2 45 45 H 1.09001 * 117.50022 * 0.02562 * 23 21 2 46 46 H 1.09000 * 117.49993 * 359.97438 * 24 21 2 47 47 H 1.09003 * 117.50047 * 144.97328 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 1.0762 -1.3860 -2.0765 6 6 3.3345 -0.6863 -1.4866 7 8 4.1164 -0.1095 -0.7557 8 7 3.7838 -1.3221 -2.5867 9 6 5.2144 -1.3179 -2.9022 10 6 5.4545 -2.1040 -4.1927 11 6 4.9774 -3.5459 -4.0075 12 6 4.6775 -1.4528 -5.3385 13 6 6.9262 -2.1002 -4.5168 14 1 7.6208 -1.5878 -3.8676 15 6 7.3859 -2.7507 -5.6422 16 7 6.5401 -3.3750 -6.4324 17 14 9.2101 -2.7453 -6.0445 18 1 9.9437 -1.9782 -5.0058 19 1 9.7139 -4.1418 -6.0773 20 1 9.4228 -2.1110 -7.3702 21 6 2.0400 -0.7212 1.2493 22 6 1.7210 -2.2156 1.3249 23 6 3.3698 -0.2517 1.8426 24 6 2.0562 0.0650 2.5617 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 0.6560 -0.6778 -2.7906 29 1 1.5980 -2.1777 -2.6142 30 1 0.2738 -1.8197 -1.4798 31 1 3.1601 -1.7825 -3.1696 32 1 5.5543 -0.2907 -3.0344 33 1 5.7679 -1.7814 -2.0856 34 1 3.9130 -3.5491 -3.7728 35 1 5.1488 -4.1062 -4.9267 36 1 5.5308 -4.0098 -3.1911 37 1 5.0175 -0.4257 -5.4705 38 1 4.8483 -2.0133 -6.2578 39 1 3.6132 -1.4561 -5.1038 40 1 6.8636 -3.8324 -7.2244 41 1 2.0954 -2.7128 0.4301 42 1 2.1983 -2.6449 2.2058 43 1 0.6419 -2.3538 1.3928 44 1 4.0174 -1.0076 2.2868 45 1 3.8812 0.5712 1.3432 46 1 1.7039 1.0962 2.5351 47 1 1.8392 -0.4823 3.4790 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459252140.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:14 Heat of formation + Delta-G solvation = -4.897328 kcal Electronic energy + Delta-G solvation = -23858.508904 eV Core-core repulsion = 20656.462425 eV Total energy + Delta-G solvation = -3202.046479 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.18117 -38.07806 -36.26433 -35.18542 -33.17653 -31.14842 -30.02907 -28.33787 -27.16272 -25.69460 -25.55957 -24.83413 -22.85271 -22.10074 -20.16718 -18.84068 -18.41400 -17.64894 -16.23898 -16.00566 -15.72221 -14.82324 -14.60429 -14.38494 -13.98905 -13.57651 -13.35770 -13.24020 -12.85443 -12.57446 -12.42972 -12.32316 -12.28616 -12.17205 -11.90337 -11.62156 -11.39051 -11.26809 -11.16905 -11.03403 -10.83325 -10.63215 -10.34789 -10.17434 -10.10022 -9.70872 -9.59389 -9.39491 -9.22078 -8.74865 -8.50619 -8.37071 -8.02531 -5.99708 -4.09173 2.99501 3.28874 3.37437 3.42640 3.73909 3.93209 4.39528 4.55844 4.70054 4.83282 5.03434 5.07759 5.10436 5.23444 5.27219 5.30231 5.41059 5.53354 5.67594 5.70695 5.76335 5.82567 5.93267 6.01973 6.09499 6.21169 6.24605 6.32545 6.42242 6.50923 6.54709 6.74786 6.85683 6.86734 6.97754 7.07027 7.19290 7.34645 7.45627 7.59054 7.72646 8.04196 8.15859 8.41902 8.53854 8.91180 9.17337 9.56448 11.01762 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.029814 B = 0.003968 C = 0.003745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.938796 B = 7054.366208 C = 7474.418105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.205 3.795 3 H 0.073 0.927 4 N -0.632 5.632 5 C 0.077 3.923 6 C 0.700 3.300 7 O -0.589 6.589 8 N -0.735 5.735 9 C 0.152 3.848 10 C 0.055 3.945 11 C -0.128 4.128 12 C -0.128 4.128 13 C -0.503 4.503 14 H 0.058 0.942 15 C 0.065 3.935 16 N -0.886 5.886 17 Si 0.892 3.108 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.285 1.285 21 C -0.140 4.140 22 C -0.106 4.106 23 C -0.142 4.142 24 C -0.182 4.182 25 H 0.069 0.931 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.052 0.948 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.392 0.608 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.004 0.996 35 H 0.084 0.916 36 H 0.026 0.974 37 H 0.026 0.974 38 H 0.084 0.916 39 H 0.004 0.996 40 H 0.258 0.742 41 H 0.058 0.942 42 H 0.051 0.949 43 H 0.053 0.947 44 H 0.084 0.916 45 H 0.109 0.891 46 H 0.089 0.911 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.279 3.201 11.104 18.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.101 3.899 3 H 0.091 0.909 4 N -0.371 5.371 5 C -0.067 4.067 6 C 0.401 3.599 7 O -0.467 6.467 8 N -0.391 5.391 9 C 0.028 3.972 10 C 0.054 3.946 11 C -0.186 4.186 12 C -0.186 4.186 13 C -0.541 4.541 14 H 0.076 0.924 15 C -0.136 4.136 16 N -0.525 5.525 17 Si 0.721 3.279 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.211 1.211 21 C -0.141 4.141 22 C -0.163 4.163 23 C -0.179 4.179 24 C -0.220 4.220 25 H 0.088 0.912 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.229 0.771 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.023 0.977 35 H 0.103 0.897 36 H 0.045 0.955 37 H 0.045 0.955 38 H 0.103 0.897 39 H 0.023 0.977 40 H 0.069 0.931 41 H 0.077 0.923 42 H 0.070 0.930 43 H 0.072 0.928 44 H 0.102 0.898 45 H 0.127 0.873 46 H 0.107 0.893 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -13.669 3.511 11.436 18.164 hybrid contribution 0.647 -0.355 -0.598 0.950 sum -13.022 3.155 10.838 17.234 Atomic orbital electron populations 1.22070 0.94242 1.02562 1.02419 1.20181 0.93072 0.94785 0.81910 0.90865 1.47091 1.05630 1.57986 1.26411 1.21730 0.94004 0.96806 0.94143 1.15967 0.81623 0.80216 0.82081 1.90832 1.54539 1.49905 1.51428 1.45673 1.10946 1.56765 1.25741 1.21529 0.76957 1.00137 0.98541 1.18367 0.95916 0.91361 0.88917 1.21805 0.94859 0.99707 1.02211 1.21803 0.94527 0.99419 1.02855 1.21031 0.91319 1.33214 1.08583 0.92391 1.24880 0.97589 0.95059 0.96025 1.69822 1.33423 1.34822 1.14461 0.86525 0.85509 0.77680 0.78232 1.19752 1.21098 1.21099 1.21747 1.03295 0.95448 0.93646 1.21186 1.00485 0.92957 1.01698 1.23019 0.89771 1.03704 1.01396 1.23039 1.03669 1.00352 0.94935 0.91229 0.92029 0.91711 0.92981 0.91442 0.91074 0.77130 0.93142 0.93133 0.97726 0.89688 0.95511 0.95497 0.89710 0.97668 0.93133 0.92252 0.93005 0.92818 0.89778 0.87318 0.89279 0.89351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.36 7.99 37.16 0.30 -1.06 16 2 C 0.20 2.51 2.47 -67.93 -0.17 2.35 16 3 H 0.07 1.01 8.05 -51.93 -0.42 0.60 16 4 N -0.63 -8.80 2.42 -179.67 -0.43 -9.24 16 5 C 0.08 0.83 9.34 59.85 0.56 1.38 16 6 C 0.70 12.72 8.04 -86.91 -0.70 12.02 16 7 O -0.59 -12.40 13.19 5.29 0.07 -12.33 16 8 N -0.74 -13.65 4.83 -65.23 -0.31 -13.96 16 9 C 0.15 3.31 4.50 -4.04 -0.02 3.30 16 10 C 0.06 1.29 0.50 -155.66 -0.08 1.22 16 11 C -0.13 -2.92 8.08 37.16 0.30 -2.62 16 12 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 13 C -0.50 -13.30 8.01 -34.44 -0.28 -13.57 16 14 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 15 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 16 N -0.89 -23.71 9.35 55.43 0.52 -23.19 16 17 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 18 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 C -0.14 -1.73 1.42 -154.51 -0.22 -1.95 16 22 C -0.11 -1.23 9.22 37.16 0.34 -0.88 16 23 C -0.14 -1.99 8.44 -26.69 -0.23 -2.21 16 24 C -0.18 -1.98 9.97 -26.70 -0.27 -2.24 16 25 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.50 7.94 -51.93 -0.41 0.09 16 27 H 0.06 0.52 5.72 -51.93 -0.30 0.22 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.76 6.12 -51.93 -0.32 0.44 16 30 H 0.07 0.61 6.10 -51.93 -0.32 0.29 16 31 H 0.39 6.66 3.80 -40.82 -0.16 6.50 16 32 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 33 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.00 0.08 6.86 -51.93 -0.36 -0.28 16 35 H 0.08 2.13 6.07 -51.92 -0.31 1.82 16 36 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.08 2.13 6.07 -51.92 -0.32 1.81 16 39 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 40 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 41 H 0.06 0.79 7.76 -51.93 -0.40 0.38 16 42 H 0.05 0.58 8.10 -51.93 -0.42 0.16 16 43 H 0.05 0.52 7.39 -51.93 -0.38 0.13 16 44 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 45 H 0.11 1.78 6.79 -51.93 -0.35 1.43 16 46 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 47 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 354.82 15.07 5.35 5.35 Total: -1.00 -28.51 354.82 -8.24 -36.75 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -8.17 Total: 6.05 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: -0.24 Total: -5.27 kcal Atomic # 7 Polarization: -46.16 SS G_CDS: -0.23 Total: -46.39 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: 0.07 Total: -12.33 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -28.51 -8.24 -36.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459252140.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.857 kcal (2) G-P(sol) polarization free energy of solvation -28.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds