Wall clock time and date at job start Tue Mar 31 2020 05:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.50969 * 2 1 4 4 C 1.53045 * 109.48740 * 120.05964 * 2 1 3 5 5 N 1.46959 * 109.36290 * 178.36831 * 4 2 1 6 6 C 1.46896 * 111.00014 * 176.81298 * 5 4 2 7 7 C 1.53178 * 109.54146 * 299.81856 * 6 5 4 8 8 C 1.53111 * 109.15616 * 183.23991 * 7 6 5 9 9 O 1.42902 * 109.48594 * 57.47757 * 8 7 6 10 10 C 1.42894 * 114.09732 * 298.88792 * 9 8 7 11 11 C 1.53098 * 109.41836 * 61.15700 * 10 9 8 12 12 C 1.46956 * 110.88047 * 300.67384 * 5 4 2 13 13 C 1.53061 * 109.36269 * 59.32350 * 12 5 4 14 14 N 1.46956 * 109.48492 * 239.94920 * 2 1 3 15 15 C 1.46900 * 111.00354 * 56.84710 * 14 2 1 16 16 C 1.53000 * 109.47230 * 169.99485 * 15 14 2 17 17 C 1.50700 * 109.47241 * 179.97438 * 16 15 14 18 18 H 1.07996 * 119.99813 * 0.02562 * 17 16 15 19 19 C 1.37870 * 120.00186 * 180.02562 * 17 16 15 20 20 N 1.31509 * 120.00288 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 120.00081 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46886 * 89.99863 * 21 19 17 23 23 H 1.48498 * 109.46990 * 209.99685 * 21 19 17 24 24 H 1.48500 * 109.46875 * 329.99617 * 21 19 17 25 25 H 1.08995 * 109.47614 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47096 * 300.05678 * 1 2 3 27 27 H 1.09004 * 109.47185 * 60.04725 * 1 2 3 28 28 H 1.09001 * 109.49153 * 298.33061 * 4 2 1 29 29 H 1.09002 * 109.49150 * 58.37865 * 4 2 1 30 30 H 1.09003 * 109.54609 * 59.99701 * 6 5 4 31 31 H 1.08994 * 109.52594 * 303.05902 * 7 6 5 32 32 H 1.08999 * 109.52239 * 63.25150 * 7 6 5 33 33 H 1.08992 * 109.40953 * 297.49106 * 8 7 6 34 34 H 1.09002 * 109.48606 * 177.50991 * 8 7 6 35 35 H 1.09007 * 109.48302 * 301.17511 * 10 9 8 36 36 H 1.09007 * 109.49151 * 181.14719 * 10 9 8 37 37 H 1.08995 * 109.52413 * 182.48685 * 11 10 9 38 38 H 1.08998 * 109.51759 * 62.29539 * 11 10 9 39 39 H 1.09001 * 109.49385 * 179.28558 * 12 5 4 40 40 H 1.08994 * 109.49384 * 299.33874 * 12 5 4 41 41 H 1.09000 * 109.48632 * 181.63116 * 13 12 5 42 42 H 1.08997 * 109.48406 * 61.56057 * 13 12 5 43 43 H 1.09001 * 109.47311 * 289.99729 * 15 14 2 44 44 H 1.08995 * 109.47144 * 49.99733 * 15 14 2 45 45 H 1.08993 * 109.47792 * 300.00295 * 16 15 14 46 46 H 1.09011 * 109.46989 * 60.00409 * 16 15 14 47 47 H 0.97002 * 120.00607 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0406 -0.7227 1.2487 5 7 3.5096 -0.7554 1.2264 6 6 4.0411 -1.3754 2.4474 7 6 3.5909 -0.5687 3.6693 8 6 4.2154 -1.1746 4.9292 9 8 5.6384 -1.1845 4.7984 10 6 6.1179 -1.9635 3.7006 11 6 5.5717 -1.3882 2.3912 12 6 3.9999 -1.4492 0.0273 13 6 3.4893 -0.7265 -1.2216 14 7 2.0202 -0.6938 -1.1992 15 6 1.4888 -0.0738 -2.4203 16 6 2.2069 -0.6534 -3.6406 17 6 1.6614 -0.0178 -4.8934 18 1 0.8808 0.7255 -4.8259 19 6 2.1587 -0.3853 -6.1257 20 7 3.1095 -1.2900 -6.2079 21 14 1.4828 0.4031 -7.6786 22 1 2.2717 1.6196 -7.9998 23 1 1.5781 -0.5603 -8.8046 24 1 0.0615 0.7767 -7.4657 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5147 0.8895 27 1 -0.3634 0.5131 -0.8904 28 1 1.7022 -0.1931 2.1393 29 1 1.6540 -1.7418 1.2628 30 1 3.6706 -2.3973 2.5285 31 1 3.9178 0.4657 3.5636 32 1 2.5043 -0.6021 3.7477 33 1 3.8550 -2.1952 5.0572 34 1 3.9343 -0.5782 5.7972 35 1 5.7824 -2.9946 3.8125 36 1 7.2075 -1.9357 3.6834 37 1 5.9004 -2.0070 1.5563 38 1 5.9399 -0.3708 2.2589 39 1 5.0899 -1.4492 0.0272 40 1 3.6362 -2.4767 0.0273 41 1 3.8277 -1.2561 -2.1121 42 1 3.8755 0.2927 -1.2353 43 1 0.4208 -0.2779 -2.4963 44 1 1.6509 1.0033 -2.3811 45 1 3.2749 -0.4493 -3.5647 46 1 2.0448 -1.7307 -3.6800 47 1 3.4597 -1.5483 -7.0749 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000488654668.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:05 Heat of formation + Delta-G solvation = -42.996040 kcal Electronic energy + Delta-G solvation = -23377.031777 eV Core-core repulsion = 20173.333213 eV Total energy + Delta-G solvation = -3203.698563 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.11956 -38.70750 -36.04387 -33.42964 -32.33480 -31.97898 -31.29386 -29.36204 -27.17217 -26.22949 -24.12253 -23.98985 -23.02976 -21.58285 -20.41215 -20.03135 -19.13270 -16.90927 -16.39303 -16.21873 -15.58632 -15.14451 -15.04981 -14.96791 -14.59865 -14.31333 -13.93113 -13.77180 -13.54188 -13.14850 -12.93291 -12.67760 -12.18799 -12.08805 -11.82619 -11.59048 -11.52269 -11.38883 -11.34985 -11.02836 -10.93864 -10.75063 -10.56464 -10.53394 -10.32854 -10.20880 -9.84679 -9.78168 -9.28866 -9.08004 -8.34949 -8.28712 -7.66175 -6.00864 -4.02959 3.31571 3.37805 3.41159 3.60819 3.83036 4.36366 4.45981 4.52000 4.66685 4.76925 4.96474 4.97734 5.03121 5.20602 5.24037 5.32928 5.34650 5.36902 5.40402 5.45870 5.53858 5.64109 5.64816 5.71587 5.78153 5.82814 5.86040 5.93011 6.06937 6.14189 6.18496 6.26825 6.35971 6.41504 6.52803 6.56674 6.94234 6.95609 7.10150 7.13185 7.53888 7.63096 7.80408 7.86112 8.04785 8.42948 9.03623 9.60806 11.10537 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.032205 B = 0.003337 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.214084 B = 8389.094730 C = 9088.409630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.082 3.918 3 H 0.042 0.958 4 C 0.064 3.936 5 N -0.535 5.535 6 C 0.085 3.915 7 C -0.149 4.149 8 C 0.063 3.937 9 O -0.384 6.384 10 C 0.063 3.937 11 C -0.151 4.151 12 C 0.056 3.944 13 C 0.056 3.944 14 N -0.537 5.537 15 C 0.063 3.937 16 C 0.021 3.979 17 C -0.521 4.521 18 H 0.054 0.946 19 C 0.058 3.942 20 N -0.894 5.894 21 Si 0.892 3.108 22 H -0.281 1.281 23 H -0.286 1.286 24 H -0.274 1.274 25 H 0.060 0.940 26 H 0.052 0.948 27 H 0.062 0.938 28 H 0.074 0.926 29 H 0.038 0.962 30 H 0.039 0.961 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.048 0.952 34 H 0.094 0.906 35 H 0.048 0.952 36 H 0.095 0.905 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.039 0.961 41 H 0.097 0.903 42 H 0.035 0.965 43 H 0.064 0.936 44 H 0.019 0.981 45 H 0.020 0.980 46 H 0.023 0.977 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.046 -0.967 21.129 21.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.027 4.027 3 H 0.060 0.940 4 C -0.064 4.064 5 N -0.259 5.259 6 C -0.024 4.024 7 C -0.187 4.187 8 C -0.014 4.014 9 O -0.303 6.303 10 C -0.014 4.014 11 C -0.189 4.189 12 C -0.072 4.072 13 C -0.073 4.073 14 N -0.262 5.262 15 C -0.064 4.064 16 C -0.016 4.016 17 C -0.560 4.560 18 H 0.072 0.928 19 C -0.143 4.143 20 N -0.533 5.533 21 Si 0.720 3.280 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.199 1.199 25 H 0.079 0.921 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.092 0.908 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.066 0.934 34 H 0.112 0.888 35 H 0.066 0.934 36 H 0.113 0.887 37 H 0.095 0.905 38 H 0.100 0.900 39 H 0.096 0.904 40 H 0.057 0.943 41 H 0.115 0.885 42 H 0.053 0.947 43 H 0.082 0.918 44 H 0.037 0.963 45 H 0.038 0.962 46 H 0.042 0.958 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.268 -0.965 21.116 21.259 hybrid contribution -0.557 0.254 -1.241 1.384 sum 1.711 -0.711 19.874 19.961 Atomic orbital electron populations 1.21821 0.94463 1.02327 1.01568 1.21615 0.94948 0.95827 0.90358 0.93989 1.22212 0.86943 0.99468 0.97772 1.62213 1.08587 1.53610 1.01516 1.21592 0.94754 0.95740 0.90275 1.22298 1.00930 1.01400 0.94096 1.22574 0.81046 1.00115 0.97680 1.87922 1.21200 1.71790 1.49357 1.22591 0.99445 0.93804 0.85572 1.22326 0.95034 1.03397 0.98181 1.22282 0.99520 0.96041 0.89366 1.22223 0.88227 0.99486 0.97320 1.62320 1.07905 1.53696 1.02300 1.22323 0.99589 0.95353 0.89089 1.19232 0.95433 0.96832 0.90081 1.21181 1.20655 1.22866 0.91251 0.92787 1.24985 0.95087 0.95118 0.99103 1.69958 1.27417 1.31329 1.24620 0.86596 0.79415 0.79076 0.82925 1.20701 1.21207 1.19881 0.92067 0.92873 0.91862 0.90788 0.94324 0.94338 0.90064 0.90821 0.93420 0.88776 0.93364 0.88674 0.90513 0.89988 0.90434 0.94271 0.88530 0.94654 0.91767 0.96279 0.96231 0.95828 0.93001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 8.87 37.16 0.33 -1.63 16 2 C 0.08 1.26 2.52 -67.66 -0.17 1.09 16 3 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 4 C 0.06 0.85 4.60 -3.77 -0.02 0.83 16 5 N -0.53 -7.11 4.58 -226.27 -1.04 -8.14 16 6 C 0.08 0.93 2.02 -67.53 -0.14 0.79 16 7 C -0.15 -1.43 5.10 -26.58 -0.14 -1.56 16 8 C 0.06 0.54 6.84 37.21 0.25 0.80 16 9 O -0.38 -4.07 10.77 -35.23 -0.38 -4.45 16 10 C 0.06 0.57 6.84 37.21 0.25 0.82 16 11 C -0.15 -1.52 4.97 -26.59 -0.13 -1.66 16 12 C 0.06 0.81 5.24 -3.76 -0.02 0.79 16 13 C 0.06 0.99 4.93 -3.76 -0.02 0.97 16 14 N -0.54 -9.90 4.67 -226.49 -1.06 -10.96 16 15 C 0.06 1.35 4.40 -3.82 -0.02 1.33 16 16 C 0.02 0.55 4.24 -27.88 -0.12 0.44 16 17 C -0.52 -14.77 9.11 -34.44 -0.31 -15.08 16 18 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 19 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 20 N -0.89 -26.77 13.29 55.43 0.74 -26.03 16 21 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 25 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.93 6.59 -51.93 -0.34 0.58 16 28 H 0.07 0.85 6.22 -51.93 -0.32 0.52 16 29 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.07 0.65 6.53 -51.93 -0.34 0.31 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.05 0.39 8.14 -51.92 -0.42 -0.03 16 36 H 0.10 0.72 8.14 -51.92 -0.42 0.30 16 37 H 0.08 0.75 6.48 -51.93 -0.34 0.41 16 38 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.08 1.02 6.14 -51.93 -0.32 0.70 16 40 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.10 1.93 5.99 -51.93 -0.31 1.62 16 42 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.06 1.36 6.86 -51.93 -0.36 1.00 16 44 H 0.02 0.41 8.08 -51.93 -0.42 -0.01 16 45 H 0.02 0.53 6.26 -51.93 -0.33 0.20 16 46 H 0.02 0.66 8.14 -51.92 -0.42 0.23 16 47 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 348.49 15.07 5.25 5.25 Total: -1.00 -30.24 348.49 -10.38 -40.62 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -8.53 Total: -2.46 kcal Atomic # 6 Polarization: -10.16 SS G_CDS: -0.34 Total: -10.49 kcal Atomic # 7 Polarization: -43.78 SS G_CDS: -1.36 Total: -45.14 kcal Atomic # 8 Polarization: -4.07 SS G_CDS: -0.38 Total: -4.45 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.24 -10.38 -40.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488654668.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.381 kcal (2) G-P(sol) polarization free energy of solvation -30.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds