Wall clock time and date at job start Tue Mar 31 2020 05:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.48374 * 2 1 4 4 C 1.53051 * 109.48448 * 239.96211 * 2 1 3 5 5 N 1.46956 * 109.36265 * 181.62612 * 4 2 1 6 6 C 1.46894 * 111.00196 * 183.18598 * 5 4 2 7 7 C 1.53173 * 109.54607 * 294.82668 * 6 5 4 8 8 C 1.53105 * 109.16025 * 183.23843 * 7 6 5 9 9 O 1.42909 * 109.48600 * 57.47583 * 8 7 6 10 10 C 1.42901 * 114.09408 * 298.88877 * 9 8 7 11 11 C 1.53094 * 109.41873 * 61.16093 * 10 9 8 12 12 C 1.46963 * 110.88015 * 59.32021 * 5 4 2 13 13 C 1.53055 * 109.36395 * 300.68105 * 12 5 4 14 14 N 1.46950 * 109.49225 * 120.06881 * 2 1 3 15 15 C 1.46899 * 111.00175 * 303.15696 * 14 2 1 16 16 C 1.53000 * 109.47222 * 169.99680 * 15 14 2 17 17 C 1.50706 * 109.46961 * 179.97438 * 16 15 14 18 18 H 1.08000 * 119.99861 * 0.02562 * 17 16 15 19 19 C 1.37873 * 119.99549 * 180.02562 * 17 16 15 20 20 N 1.31512 * 120.00573 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 119.99831 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46791 * 89.99928 * 21 19 17 23 23 H 1.48494 * 109.47164 * 209.99990 * 21 19 17 24 24 H 1.48499 * 109.46897 * 329.99949 * 21 19 17 25 25 H 1.09004 * 109.46834 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47100 * 300.03910 * 1 2 3 27 27 H 1.08996 * 109.47664 * 60.03701 * 1 2 3 28 28 H 1.09000 * 109.49282 * 61.66569 * 4 2 1 29 29 H 1.08993 * 109.51041 * 301.60595 * 4 2 1 30 30 H 1.08996 * 109.54667 * 55.00490 * 6 5 4 31 31 H 1.08999 * 109.52459 * 303.05519 * 7 6 5 32 32 H 1.09003 * 109.52089 * 63.24629 * 7 6 5 33 33 H 1.08998 * 109.40804 * 297.49692 * 8 7 6 34 34 H 1.09000 * 109.49564 * 177.50669 * 8 7 6 35 35 H 1.09001 * 109.48250 * 301.17396 * 10 9 8 36 36 H 1.09007 * 109.48765 * 181.14713 * 10 9 8 37 37 H 1.08990 * 109.52517 * 182.48320 * 11 10 9 38 38 H 1.08997 * 109.52361 * 62.28977 * 11 10 9 39 39 H 1.09003 * 109.48613 * 60.64622 * 12 5 4 40 40 H 1.08994 * 109.49091 * 180.71076 * 12 5 4 41 41 H 1.08994 * 109.48838 * 298.43235 * 13 12 5 42 42 H 1.09003 * 109.50210 * 178.37531 * 13 12 5 43 43 H 1.09001 * 109.46732 * 289.99864 * 15 14 2 44 44 H 1.09005 * 109.46849 * 49.99891 * 15 14 2 45 45 H 1.08993 * 109.47157 * 300.00379 * 16 15 14 46 46 H 1.09005 * 109.47036 * 60.00325 * 16 15 14 47 47 H 0.96997 * 120.00187 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0405 -0.7223 -1.2491 5 7 3.5096 -0.7548 -1.2268 6 6 4.0410 -1.3744 -2.4481 7 6 3.6267 -2.8483 -2.4970 8 6 4.2519 -3.5053 -3.7305 9 8 5.6725 -3.3577 -3.6808 10 6 6.1184 -2.0001 -3.6821 11 6 5.5701 -1.2831 -2.4455 12 6 4.0000 -1.4490 -0.0279 13 6 3.4894 -0.7267 1.2212 14 7 2.0204 -0.6941 1.1989 15 6 1.4890 -0.0746 2.4202 16 6 1.8117 -0.9618 3.6242 17 6 1.2671 -0.3259 4.8772 18 1 0.7428 0.6166 4.8204 19 6 1.4382 -0.9474 6.0960 20 7 2.0762 -2.0953 6.1651 21 14 0.7625 -0.1595 7.6492 22 1 -0.6252 -0.6345 7.8817 23 1 1.6146 -0.5352 8.8058 24 1 0.7608 1.3174 7.4945 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5144 0.8896 27 1 -0.3634 0.5132 -0.8902 28 1 1.7021 -0.1924 -2.1395 29 1 1.6544 -1.7414 -1.2636 30 1 3.6463 -0.8556 -3.3217 31 1 3.9779 -3.3554 -1.5984 32 1 2.5406 -2.9196 -2.5558 33 1 3.8679 -3.0251 -4.6305 34 1 3.9970 -4.5649 -3.7469 35 1 5.7587 -1.5001 -4.5814 36 1 7.2080 -1.9751 -3.6634 37 1 5.8725 -0.2362 -2.4674 38 1 5.9617 -1.7576 -1.5458 39 1 3.6360 -2.4765 -0.0282 40 1 5.0899 -1.4490 -0.0280 41 1 3.8756 0.2924 1.2353 42 1 3.8279 -1.2563 2.1117 43 1 1.9453 0.9056 2.5585 44 1 0.4084 0.0370 2.3304 45 1 1.3555 -1.9420 3.4858 46 1 2.8923 -1.0734 3.7140 47 1 2.1962 -2.5326 7.0225 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000488667220.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:08 Heat of formation + Delta-G solvation = -42.015798 kcal Electronic energy + Delta-G solvation = -23487.489260 eV Core-core repulsion = 20283.833203 eV Total energy + Delta-G solvation = -3203.656057 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.28170 -38.63518 -36.06967 -33.37868 -32.15750 -31.85215 -31.30681 -29.47525 -27.20878 -26.13677 -24.13549 -23.79691 -23.14555 -22.18693 -20.42033 -19.77802 -18.93004 -16.78463 -16.42020 -16.27614 -15.63048 -15.21092 -14.98238 -14.83439 -14.52634 -14.45135 -14.05978 -13.70797 -13.49634 -13.32843 -12.97063 -12.44996 -12.15564 -12.02568 -11.86137 -11.66433 -11.50749 -11.40170 -11.25382 -10.99451 -10.93078 -10.82269 -10.72917 -10.51525 -10.39247 -10.17361 -9.79230 -9.69064 -9.30511 -9.08438 -8.31683 -8.23329 -7.66794 -5.98337 -4.00605 3.32694 3.38862 3.42003 3.64269 3.85198 4.35336 4.51998 4.54067 4.58621 4.77763 4.93402 4.96845 5.04258 5.18494 5.22203 5.29117 5.36927 5.38111 5.43171 5.46494 5.53249 5.59980 5.68866 5.70942 5.78917 5.81111 5.86006 5.94208 6.02580 6.12897 6.18076 6.27766 6.34186 6.40344 6.49811 6.58415 6.96361 7.02116 7.07074 7.11493 7.55816 7.62177 7.82847 7.92342 8.10350 8.45504 9.06701 9.62992 11.13006 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028511 B = 0.003435 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.852083 B = 8150.578516 C = 8643.466475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.082 3.918 3 H 0.041 0.959 4 C 0.064 3.936 5 N -0.533 5.533 6 C 0.086 3.914 7 C -0.192 4.192 8 C 0.067 3.933 9 O -0.384 6.384 10 C 0.063 3.937 11 C -0.150 4.150 12 C 0.053 3.947 13 C 0.058 3.942 14 N -0.534 5.534 15 C 0.059 3.941 16 C 0.029 3.971 17 C -0.521 4.521 18 H 0.053 0.947 19 C 0.058 3.942 20 N -0.893 5.893 21 Si 0.891 3.109 22 H -0.280 1.280 23 H -0.287 1.287 24 H -0.274 1.274 25 H 0.062 0.938 26 H 0.065 0.935 27 H 0.052 0.948 28 H 0.070 0.930 29 H 0.044 0.956 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.048 0.952 34 H 0.092 0.908 35 H 0.049 0.951 36 H 0.094 0.906 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.046 0.954 40 H 0.076 0.924 41 H 0.033 0.967 42 H 0.090 0.910 43 H 0.018 0.982 44 H 0.067 0.933 45 H 0.023 0.977 46 H 0.016 0.984 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.293 0.919 -21.131 21.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.028 4.028 3 H 0.058 0.942 4 C -0.064 4.064 5 N -0.255 5.255 6 C -0.023 4.023 7 C -0.232 4.232 8 C -0.011 4.011 9 O -0.303 6.303 10 C -0.015 4.015 11 C -0.188 4.188 12 C -0.075 4.075 13 C -0.070 4.070 14 N -0.260 5.260 15 C -0.067 4.067 16 C -0.008 4.008 17 C -0.560 4.560 18 H 0.071 0.929 19 C -0.143 4.143 20 N -0.532 5.532 21 Si 0.719 3.281 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.199 1.199 25 H 0.081 0.919 26 H 0.084 0.916 27 H 0.071 0.929 28 H 0.088 0.912 29 H 0.062 0.938 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.066 0.934 34 H 0.110 0.890 35 H 0.067 0.933 36 H 0.112 0.888 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.064 0.936 40 H 0.095 0.905 41 H 0.051 0.949 42 H 0.108 0.892 43 H 0.036 0.964 44 H 0.085 0.915 45 H 0.041 0.959 46 H 0.034 0.966 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.473 0.654 -20.986 21.467 hybrid contribution -0.597 0.637 0.996 1.324 sum 3.876 1.291 -19.990 20.403 Atomic orbital electron populations 1.21874 0.94420 1.02527 1.01559 1.21585 0.95008 0.95734 0.90425 0.94155 1.22183 0.86919 0.99669 0.97621 1.62396 1.08686 1.52781 1.01682 1.21708 0.94966 0.92053 0.93590 1.22918 1.01641 0.98277 1.00314 1.22500 0.81004 1.01181 0.96379 1.87936 1.21658 1.25876 1.94830 1.22583 0.99722 0.82526 0.96639 1.22301 0.95023 1.01909 0.99562 1.22295 0.99420 0.96488 0.89252 1.22153 0.88283 0.99198 0.97409 1.62284 1.07649 1.53774 1.02290 1.22412 0.98894 0.96205 0.89218 1.19080 0.96884 0.95078 0.89769 1.21197 1.36098 1.06686 0.92032 0.92851 1.24985 0.95323 0.94937 0.99033 1.69968 1.41873 1.16190 1.25214 0.86611 0.78903 0.79626 0.82953 1.20663 1.21238 1.19936 0.91938 0.91639 0.92887 0.91174 0.93811 0.90294 0.90264 0.90657 0.93379 0.88999 0.93301 0.88764 0.90114 0.90528 0.93619 0.90536 0.94860 0.89195 0.96371 0.91498 0.95862 0.96610 0.93027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 8.89 37.16 0.33 -1.68 16 2 C 0.08 1.24 2.56 -67.66 -0.17 1.07 16 3 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 4 C 0.06 0.83 4.54 -3.77 -0.02 0.82 16 5 N -0.53 -6.85 4.70 -226.27 -1.06 -7.91 16 6 C 0.09 0.90 2.32 -67.53 -0.16 0.74 16 7 C -0.19 -1.98 4.72 -26.59 -0.13 -2.10 16 8 C 0.07 0.61 6.84 37.21 0.25 0.87 16 9 O -0.38 -4.18 10.77 -35.23 -0.38 -4.56 16 10 C 0.06 0.54 6.84 37.21 0.25 0.80 16 11 C -0.15 -1.45 5.31 -26.59 -0.14 -1.59 16 12 C 0.05 0.76 4.82 -3.76 -0.02 0.74 16 13 C 0.06 1.01 5.41 -3.77 -0.02 0.99 16 14 N -0.53 -9.82 4.53 -226.49 -1.02 -10.84 16 15 C 0.06 1.26 4.66 -3.82 -0.02 1.25 16 16 C 0.03 0.76 4.91 -27.88 -0.14 0.63 16 17 C -0.52 -14.85 9.11 -34.44 -0.31 -15.16 16 18 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 19 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 20 N -0.89 -26.99 13.29 55.43 0.74 -26.25 16 21 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 24 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 25 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.06 0.97 6.15 -51.93 -0.32 0.65 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.80 8.12 -51.93 -0.42 0.37 16 29 H 0.04 0.59 6.68 -51.93 -0.35 0.25 16 30 H 0.08 0.78 8.12 -51.93 -0.42 0.36 16 31 H 0.08 0.95 6.30 -51.93 -0.33 0.62 16 32 H 0.07 0.76 6.77 -51.93 -0.35 0.41 16 33 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.08 0.82 6.22 -51.93 -0.32 0.50 16 39 H 0.05 0.70 6.40 -51.93 -0.33 0.36 16 40 H 0.08 1.01 6.11 -51.93 -0.32 0.69 16 41 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.09 1.74 6.34 -51.93 -0.33 1.41 16 43 H 0.02 0.39 8.12 -51.93 -0.42 -0.03 16 44 H 0.07 1.40 5.73 -51.93 -0.30 1.10 16 45 H 0.02 0.66 8.14 -51.93 -0.42 0.23 16 46 H 0.02 0.43 6.49 -51.93 -0.34 0.10 16 47 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 345.56 15.07 5.21 5.21 Total: -1.00 -30.41 345.56 -10.24 -40.65 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -8.32 Total: -1.99 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: -0.38 Total: -11.04 kcal Atomic # 7 Polarization: -43.65 SS G_CDS: -1.35 Total: -45.01 kcal Atomic # 8 Polarization: -4.18 SS G_CDS: -0.38 Total: -4.56 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.41 -10.24 -40.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488667220.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.364 kcal (2) G-P(sol) polarization free energy of solvation -30.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds