Wall clock time and date at job start Tue Mar 31 2020 05:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21289 * 119.99655 * 2 1 4 4 N 1.34771 * 120.00549 * 179.97438 * 2 1 3 5 5 C 1.46499 * 120.00081 * 180.02562 * 4 2 1 6 6 H 1.08999 * 109.47330 * 35.00291 * 5 4 2 7 7 C 1.53003 * 109.47505 * 275.00327 * 5 4 2 8 8 C 1.53003 * 109.47122 * 155.00274 * 5 4 2 9 9 C 1.53112 * 109.52304 * 299.87305 * 8 5 4 10 10 C 1.53048 * 109.27634 * 182.50159 * 9 8 5 11 11 N 1.46843 * 109.57041 * 59.08584 * 10 9 8 12 12 C 1.46904 * 110.99947 * 174.19431 * 11 10 9 13 13 H 1.09004 * 109.47086 * 66.28156 * 12 11 10 14 14 C 1.52997 * 109.47519 * 186.28476 * 12 11 10 15 15 C 1.53006 * 109.46967 * 306.28697 * 12 11 10 16 16 C 1.50705 * 109.46731 * 302.85945 * 15 12 11 17 17 H 1.07995 * 120.00001 * 5.12529 * 16 15 12 18 18 C 1.37876 * 119.99866 * 185.12694 * 16 15 12 19 19 N 1.31513 * 120.00174 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99883 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47098 * 90.00212 * 20 18 16 22 22 H 1.48498 * 109.47062 * 209.99996 * 20 18 16 23 23 H 1.48500 * 109.46987 * 329.99626 * 20 18 16 24 24 C 1.46848 * 111.20213 * 298.28917 * 11 10 9 25 25 C 1.53035 * 109.52055 * 61.74338 * 24 11 10 26 26 H 1.09001 * 109.47167 * 269.99515 * 1 2 3 27 27 H 1.08993 * 109.47215 * 30.00346 * 1 2 3 28 28 H 1.09002 * 109.46662 * 150.00129 * 1 2 3 29 29 H 0.96997 * 120.00255 * 0.02562 * 4 2 1 30 30 H 1.08992 * 109.47713 * 179.97438 * 7 5 4 31 31 H 1.09001 * 109.46826 * 59.99465 * 7 5 4 32 32 H 1.08999 * 109.46797 * 300.00290 * 7 5 4 33 33 H 1.09006 * 109.52296 * 60.00636 * 8 5 4 34 34 H 1.08997 * 109.50831 * 302.38259 * 9 8 5 35 35 H 1.09002 * 109.50079 * 62.49982 * 9 8 5 36 36 H 1.09000 * 109.40640 * 299.07158 * 10 9 8 37 37 H 1.08997 * 109.46514 * 179.13361 * 10 9 8 38 38 H 1.09003 * 109.47028 * 299.99628 * 14 12 11 39 39 H 1.09004 * 109.47202 * 59.99752 * 14 12 11 40 40 H 1.08993 * 109.47438 * 179.97438 * 14 12 11 41 41 H 1.08994 * 109.47192 * 62.85782 * 15 12 11 42 42 H 1.08992 * 109.47085 * 182.86333 * 15 12 11 43 43 H 0.96992 * 120.00355 * 180.02562 * 19 18 16 44 44 H 1.09001 * 109.45936 * 301.72967 * 24 11 10 45 45 H 1.08996 * 109.46374 * 181.76051 * 24 11 10 46 46 H 1.09004 * 109.50143 * 180.87942 * 25 24 11 47 47 H 1.09000 * 109.53453 * 60.78546 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1671 0.0005 5 6 3.6460 -1.1670 0.0011 6 1 4.0090 -0.3250 0.5905 7 6 4.1566 -1.0414 -1.4357 8 6 4.1558 -2.4742 0.6112 9 6 3.6482 -2.5995 2.0502 10 6 4.2122 -3.8775 2.6755 11 7 5.6797 -3.8283 2.6563 12 6 6.2543 -4.9753 3.3720 13 1 6.0221 -5.8936 2.8326 14 6 7.7723 -4.8092 3.4666 15 6 5.6604 -5.0472 4.7803 16 6 5.9206 -3.7500 5.5020 17 1 6.3820 -2.9248 4.9800 18 6 5.5696 -3.6168 6.8286 19 7 5.0074 -4.6215 7.4642 20 14 5.8928 -2.0091 7.7233 21 1 4.7145 -1.1170 7.5793 22 1 6.1329 -2.2834 9.1629 23 1 7.0879 -1.3492 7.1391 24 6 6.1907 -3.7563 1.2815 25 6 5.6870 -2.4739 0.6152 26 1 -0.3633 -0.0001 1.0277 27 1 -0.3633 0.8899 -0.5139 28 1 -0.3633 -0.8900 -0.5138 29 1 1.6961 -2.0072 0.0005 30 1 5.2465 -1.0409 -1.4353 31 1 3.7933 -0.1102 -1.8703 32 1 3.7935 -1.8834 -2.0252 33 1 3.7933 -3.3168 0.0222 34 1 3.9774 -1.7364 2.6288 35 1 2.5591 -2.6437 2.0493 36 1 3.8702 -4.7412 2.1051 37 1 3.8651 -3.9619 3.7052 38 1 8.1953 -4.7580 2.4633 39 1 8.0044 -3.8909 4.0061 40 1 8.1985 -5.6600 3.9980 41 1 4.5858 -5.2164 4.7132 42 1 6.1239 -5.8673 5.3286 43 1 4.7601 -4.5277 8.3974 44 1 5.8395 -4.6206 0.7178 45 1 7.2806 -3.7526 1.2989 46 1 6.0537 -2.4285 -0.4103 47 1 6.0494 -1.6084 1.1700 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000514732634.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:40 Heat of formation + Delta-G solvation = -55.072871 kcal Electronic energy + Delta-G solvation = -23544.182922 eV Core-core repulsion = 20339.960668 eV Total energy + Delta-G solvation = -3204.222254 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.05094 -38.79102 -36.40757 -34.00362 -32.45173 -31.48184 -30.59411 -29.45295 -28.53638 -26.90108 -24.55450 -23.60890 -22.08438 -21.37859 -20.57094 -19.56214 -18.97495 -16.99889 -16.35564 -16.33688 -15.31639 -15.21122 -14.56854 -14.25186 -14.06973 -13.85646 -13.72729 -13.54444 -13.20308 -12.95142 -12.78249 -12.55711 -12.32778 -12.14810 -12.01346 -11.76609 -11.52473 -11.06896 -10.95997 -10.87286 -10.84011 -10.74701 -10.50318 -10.44542 -10.25585 -9.99100 -9.84745 -9.67762 -9.14917 -9.04706 -8.93173 -8.25133 -7.43775 -5.88818 -3.86186 2.58151 3.15582 3.39806 3.46213 3.50806 4.50821 4.57526 4.65024 4.77030 4.91081 4.99316 5.03622 5.21179 5.32118 5.39813 5.46085 5.48071 5.60183 5.61756 5.69055 5.74291 5.88589 5.91312 5.94412 5.98673 6.05763 6.11266 6.12537 6.26477 6.30393 6.34677 6.41175 6.48486 6.58837 6.73069 6.79873 6.95693 7.18212 7.44195 7.57648 7.68741 7.96410 8.02451 8.14434 8.16545 8.59737 9.22454 9.76218 11.23263 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015959 B = 0.004694 C = 0.004015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.093316 B = 5964.027801 C = 6972.242817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.510 3.490 3 O -0.550 6.550 4 N -0.723 5.723 5 C 0.144 3.856 6 H 0.089 0.911 7 C -0.162 4.162 8 C -0.093 4.093 9 C -0.107 4.107 10 C 0.059 3.941 11 N -0.511 5.511 12 C 0.089 3.911 13 H 0.008 0.992 14 C -0.131 4.131 15 C 0.024 3.976 16 C -0.485 4.485 17 H 0.068 0.932 18 C 0.050 3.950 19 N -0.905 5.905 20 Si 0.887 3.113 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.275 1.275 24 C 0.051 3.949 25 C -0.106 4.106 26 H 0.094 0.906 27 H 0.090 0.910 28 H 0.078 0.922 29 H 0.399 0.601 30 H 0.069 0.931 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.057 0.943 36 H 0.013 0.987 37 H 0.099 0.901 38 H 0.031 0.969 39 H 0.072 0.928 40 H 0.048 0.952 41 H 0.013 0.987 42 H 0.022 0.978 43 H 0.257 0.743 44 H 0.018 0.982 45 H 0.074 0.926 46 H 0.062 0.938 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.569 2.719 -17.468 18.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.297 3.703 3 O -0.428 6.428 4 N -0.375 5.375 5 C 0.040 3.960 6 H 0.107 0.893 7 C -0.220 4.220 8 C -0.112 4.112 9 C -0.144 4.144 10 C -0.069 4.069 11 N -0.236 5.236 12 C -0.019 4.019 13 H 0.026 0.974 14 C -0.188 4.188 15 C -0.013 4.013 16 C -0.524 4.524 17 H 0.086 0.914 18 C -0.149 4.149 19 N -0.546 5.546 20 Si 0.716 3.284 21 H -0.210 1.210 22 H -0.217 1.217 23 H -0.200 1.200 24 C -0.077 4.077 25 C -0.144 4.144 26 H 0.112 0.888 27 H 0.109 0.891 28 H 0.097 0.903 29 H 0.233 0.767 30 H 0.088 0.912 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.076 0.924 36 H 0.032 0.968 37 H 0.117 0.883 38 H 0.050 0.950 39 H 0.091 0.909 40 H 0.067 0.933 41 H 0.031 0.969 42 H 0.040 0.960 43 H 0.066 0.934 44 H 0.037 0.963 45 H 0.092 0.908 46 H 0.081 0.919 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.042 3.855 -17.047 18.191 hybrid contribution -0.448 -0.406 0.191 0.635 sum -5.491 3.449 -16.857 18.061 Atomic orbital electron populations 1.21890 0.92023 1.04554 1.04855 1.20779 0.90505 0.83645 0.75420 1.90721 1.70822 1.31457 1.49780 1.46182 1.07541 1.08560 1.75170 1.21056 0.79138 0.99247 0.96566 0.89308 1.22203 1.01726 1.01758 0.96355 1.21496 0.96748 0.95773 0.97169 1.21605 0.98852 0.99821 0.94167 1.22082 0.88131 0.94503 1.02198 1.61827 1.06099 1.43723 1.11993 1.21732 0.94891 0.88180 0.97050 0.97371 1.21761 0.95046 1.02869 0.99169 1.19283 0.95417 0.97961 0.88672 1.21193 1.38060 0.98660 0.94457 0.91431 1.25022 0.95952 0.96089 0.97860 1.69963 1.43262 1.30820 1.10556 0.86667 0.78580 0.84420 0.78736 1.21006 1.21702 1.19961 1.22114 1.00098 0.95558 0.89946 1.21614 0.93665 0.99355 0.99802 0.88782 0.89124 0.90347 0.76665 0.91216 0.92501 0.92755 0.91486 0.90845 0.92424 0.96840 0.88296 0.95017 0.90888 0.93297 0.96909 0.95968 0.93382 0.96339 0.90788 0.91905 0.90823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.28 10.30 36.01 0.37 -0.91 16 2 C 0.51 5.93 7.90 -10.99 -0.09 5.85 16 3 O -0.55 -8.97 16.76 5.55 0.09 -8.87 16 4 N -0.72 -7.32 4.43 -53.80 -0.24 -7.56 16 5 C 0.14 1.66 2.16 -67.93 -0.15 1.51 16 6 H 0.09 1.26 7.58 -51.93 -0.39 0.87 16 7 C -0.16 -1.66 9.14 37.16 0.34 -1.32 16 8 C -0.09 -1.10 1.89 -90.50 -0.17 -1.27 16 9 C -0.11 -1.55 5.19 -26.65 -0.14 -1.69 16 10 C 0.06 1.03 5.03 -3.83 -0.02 1.01 16 11 N -0.51 -9.40 3.85 -226.68 -0.87 -10.27 16 12 C 0.09 1.80 2.34 -67.71 -0.16 1.64 16 13 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 14 C -0.13 -2.46 8.82 37.16 0.33 -2.13 16 15 C 0.02 0.59 4.19 -27.88 -0.12 0.47 16 16 C -0.49 -13.12 7.63 -34.44 -0.26 -13.38 16 17 H 0.07 1.84 6.86 -52.49 -0.36 1.48 16 18 C 0.05 1.41 5.46 -17.82 -0.10 1.31 16 19 N -0.90 -26.90 13.29 55.43 0.74 -26.17 16 20 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 21 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 23 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 24 C 0.05 0.76 5.25 -3.83 -0.02 0.74 16 25 C -0.11 -1.34 4.95 -26.65 -0.13 -1.47 16 26 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.40 3.05 8.41 -40.82 -0.34 2.70 16 30 H 0.07 0.67 6.49 -51.93 -0.34 0.33 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.06 0.74 7.54 -51.93 -0.39 0.35 16 36 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 37 H 0.10 2.08 5.74 -51.93 -0.30 1.79 16 38 H 0.03 0.50 6.33 -51.93 -0.33 0.18 16 39 H 0.07 1.51 6.91 -51.93 -0.36 1.15 16 40 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.01 0.33 6.37 -51.93 -0.33 0.00 16 42 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 44 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 45 H 0.07 1.09 6.07 -51.93 -0.32 0.77 16 46 H 0.06 0.66 6.58 -51.93 -0.34 0.32 16 47 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 358.46 15.07 5.40 5.40 Total: -1.00 -31.85 358.46 -8.64 -40.49 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -8.43 Total: -0.36 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: -0.31 Total: -9.63 kcal Atomic # 7 Polarization: -43.62 SS G_CDS: -0.37 Total: -44.00 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: 0.09 Total: -8.87 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.85 -8.64 -40.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514732634.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.583 kcal (2) G-P(sol) polarization free energy of solvation -31.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds