Wall clock time and date at job start Tue Mar 31 2020 05:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 O 1.21278 * 119.99505 * 2 1 4 4 N 1.34772 * 120.00063 * 180.02562 * 2 1 3 5 5 C 1.46502 * 119.99859 * 180.27204 * 4 2 1 6 6 H 1.08999 * 109.47216 * 324.72356 * 5 4 2 7 7 C 1.53002 * 109.46803 * 84.72444 * 5 4 2 8 8 C 1.53002 * 109.47008 * 204.72390 * 5 4 2 9 9 C 1.53114 * 109.52420 * 299.68519 * 8 5 4 10 10 C 1.53041 * 109.27825 * 182.44469 * 9 8 5 11 11 N 1.46842 * 109.52528 * 59.17570 * 10 9 8 12 12 C 1.46902 * 111.00243 * 174.16117 * 11 10 9 13 13 H 1.09000 * 109.46505 * 66.27729 * 12 11 10 14 14 C 1.52995 * 109.47287 * 186.27753 * 12 11 10 15 15 C 1.53006 * 109.47008 * 306.28143 * 12 11 10 16 16 C 1.50699 * 109.46820 * 302.82834 * 15 12 11 17 17 H 1.08003 * 120.00257 * 5.13212 * 16 15 12 18 18 C 1.37877 * 119.99429 * 185.12491 * 16 15 12 19 19 N 1.31510 * 120.00342 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99647 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.46938 * 59.99963 * 20 18 16 22 22 H 1.48500 * 109.46948 * 180.02562 * 20 18 16 23 23 H 1.48494 * 109.46990 * 300.00299 * 20 18 16 24 24 C 1.46843 * 111.19970 * 298.26017 * 11 10 9 25 25 C 1.53041 * 109.52406 * 61.73973 * 24 11 10 26 26 H 1.08997 * 109.46737 * 269.98915 * 1 2 3 27 27 H 1.08993 * 109.47487 * 29.99402 * 1 2 3 28 28 H 1.09002 * 109.46939 * 149.99858 * 1 2 3 29 29 H 0.97002 * 120.00295 * 359.97438 * 4 2 1 30 30 H 1.09000 * 109.47405 * 60.00514 * 7 5 4 31 31 H 1.09000 * 109.46965 * 179.97438 * 7 5 4 32 32 H 1.08994 * 109.46968 * 300.00121 * 7 5 4 33 33 H 1.09002 * 109.52288 * 59.87756 * 8 5 4 34 34 H 1.09004 * 109.50237 * 302.38211 * 9 8 5 35 35 H 1.08997 * 109.50718 * 62.49822 * 9 8 5 36 36 H 1.08999 * 109.45797 * 299.15727 * 10 9 8 37 37 H 1.08997 * 109.46290 * 179.19279 * 10 9 8 38 38 H 1.09003 * 109.46887 * 179.97438 * 14 12 11 39 39 H 1.08999 * 109.47603 * 299.99982 * 14 12 11 40 40 H 1.09000 * 109.46906 * 60.00238 * 14 12 11 41 41 H 1.08999 * 109.46557 * 62.83085 * 15 12 11 42 42 H 1.08999 * 109.46681 * 182.82845 * 15 12 11 43 43 H 0.97006 * 119.99996 * 180.02562 * 19 18 16 44 44 H 1.09003 * 109.46315 * 301.72854 * 24 11 10 45 45 H 1.09002 * 109.46689 * 181.75510 * 24 11 10 46 46 H 1.09000 * 109.50464 * 180.87658 * 25 24 11 47 47 H 1.09005 * 109.53420 * 60.78532 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6460 -1.1671 0.0055 6 1 4.0117 -0.3265 -0.5841 7 6 4.1500 -1.0385 1.4444 8 6 4.1585 -2.4757 -0.5994 9 6 3.6518 -3.6570 0.2325 10 6 4.2173 -4.9583 -0.3410 11 7 5.6846 -4.9103 -0.3130 12 6 6.2615 -6.1963 -0.7271 13 1 6.0315 -6.3762 -1.7773 14 6 7.7791 -6.1595 -0.5365 15 6 5.6674 -7.3198 0.1249 16 6 5.9253 -7.0350 1.5821 17 1 6.3853 -6.1035 1.8772 18 6 5.5737 -7.9637 2.5386 19 7 5.0139 -9.0982 2.1792 20 14 5.8926 -7.6105 4.3450 21 1 5.1567 -6.3851 4.7472 22 1 5.4275 -8.7590 5.1635 23 1 7.3478 -7.4071 4.5601 24 6 6.1959 -3.8124 -1.1433 25 6 5.6896 -2.4768 -0.5937 26 1 -0.3633 -0.0002 1.0277 27 1 -0.3634 0.8900 -0.5137 28 1 -0.3633 -0.8900 -0.5139 29 1 1.6960 -2.0072 -0.0005 30 1 3.7843 -1.8792 2.0340 31 1 5.2400 -1.0389 1.4489 32 1 3.7848 -0.1063 1.8753 33 1 3.7980 -2.5692 -1.6239 34 1 3.9800 -3.5418 1.2656 35 1 2.5628 -3.6866 0.1972 36 1 3.8774 -5.0797 -1.3695 37 1 3.8700 -5.8003 0.2578 38 1 8.2070 -7.1139 -0.8433 39 1 8.2023 -5.3592 -1.1434 40 1 8.0090 -5.9795 0.5137 41 1 4.5931 -7.3785 -0.0494 42 1 6.1322 -8.2672 -0.1480 43 1 4.7662 -9.7514 2.8523 44 1 5.8468 -3.9391 -2.1681 45 1 7.2858 -3.8219 -1.1272 46 1 6.0566 -1.6632 -1.2194 47 1 6.0499 -2.3424 0.4263 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000514732635.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:42 Heat of formation + Delta-G solvation = -52.472342 kcal Electronic energy + Delta-G solvation = -23600.951825 eV Core-core repulsion = 20396.842338 eV Total energy + Delta-G solvation = -3204.109487 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.12854 -38.84638 -36.47231 -33.97949 -32.48219 -31.32209 -30.62998 -29.47393 -28.35192 -26.91694 -24.84918 -23.58206 -22.37689 -21.59670 -20.40809 -19.15575 -18.88097 -17.06674 -16.43771 -16.19118 -15.36139 -15.12946 -14.67263 -14.59253 -14.30085 -13.87794 -13.57804 -13.35280 -13.17629 -12.98043 -12.89933 -12.55585 -12.27884 -12.18531 -11.93535 -11.75814 -11.52953 -11.05255 -10.93788 -10.89977 -10.82782 -10.64222 -10.53371 -10.48260 -10.28195 -9.97811 -9.80857 -9.71269 -9.13002 -9.09701 -8.96165 -8.27093 -7.45525 -5.90692 -3.88244 2.54323 3.15129 3.38658 3.43110 3.46416 4.50271 4.56093 4.64712 4.77898 4.89380 4.98108 5.01725 5.17616 5.36919 5.40270 5.45995 5.50590 5.60526 5.62782 5.69341 5.78727 5.89395 5.91636 5.96183 5.99101 6.05411 6.08070 6.19631 6.27001 6.32347 6.34004 6.41306 6.48577 6.57785 6.72615 6.77171 6.94289 7.16720 7.43205 7.56142 7.67040 7.94502 8.00650 8.12412 8.13432 8.57827 9.20004 9.73962 11.21319 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018006 B = 0.004427 C = 0.003973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.660308 B = 6322.695998 C = 7045.945519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.509 3.491 3 O -0.553 6.553 4 N -0.724 5.724 5 C 0.147 3.853 6 H 0.083 0.917 7 C -0.166 4.166 8 C -0.094 4.094 9 C -0.111 4.111 10 C 0.058 3.942 11 N -0.510 5.510 12 C 0.089 3.911 13 H 0.009 0.991 14 C -0.131 4.131 15 C 0.024 3.976 16 C -0.486 4.486 17 H 0.067 0.933 18 C 0.050 3.950 19 N -0.905 5.905 20 Si 0.888 3.112 21 H -0.279 1.279 22 H -0.292 1.292 23 H -0.279 1.279 24 C 0.051 3.949 25 C -0.108 4.108 26 H 0.092 0.908 27 H 0.090 0.910 28 H 0.079 0.921 29 H 0.401 0.599 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.054 0.946 36 H 0.014 0.986 37 H 0.099 0.901 38 H 0.048 0.952 39 H 0.031 0.969 40 H 0.072 0.928 41 H 0.013 0.987 42 H 0.022 0.978 43 H 0.257 0.743 44 H 0.018 0.982 45 H 0.074 0.926 46 H 0.059 0.941 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.543 13.695 -6.291 16.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.296 3.704 3 O -0.432 6.432 4 N -0.376 5.376 5 C 0.042 3.958 6 H 0.101 0.899 7 C -0.224 4.224 8 C -0.113 4.113 9 C -0.149 4.149 10 C -0.069 4.069 11 N -0.235 5.235 12 C -0.019 4.019 13 H 0.026 0.974 14 C -0.188 4.188 15 C -0.013 4.013 16 C -0.525 4.525 17 H 0.085 0.915 18 C -0.149 4.149 19 N -0.546 5.546 20 Si 0.716 3.284 21 H -0.204 1.204 22 H -0.218 1.218 23 H -0.205 1.205 24 C -0.077 4.077 25 C -0.146 4.146 26 H 0.111 0.889 27 H 0.109 0.891 28 H 0.098 0.902 29 H 0.236 0.764 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.099 0.901 35 H 0.072 0.928 36 H 0.032 0.968 37 H 0.118 0.882 38 H 0.067 0.933 39 H 0.050 0.950 40 H 0.091 0.909 41 H 0.031 0.969 42 H 0.040 0.960 43 H 0.067 0.933 44 H 0.037 0.963 45 H 0.092 0.908 46 H 0.078 0.922 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.027 14.366 -5.740 16.267 hybrid contribution -0.429 -0.562 0.175 0.728 sum -5.456 13.805 -5.565 15.853 Atomic orbital electron populations 1.21894 0.92025 1.04719 1.04731 1.20798 0.90535 0.83658 0.75432 1.90706 1.70871 1.31509 1.50067 1.46309 1.07698 1.08678 1.74955 1.20990 0.79058 0.98431 0.97283 0.89896 1.22270 1.01940 1.02047 0.96158 1.21481 0.96762 0.93724 0.99347 1.21702 0.98439 0.93839 1.00906 1.22072 0.88226 0.98387 0.98255 1.61824 1.05964 1.03367 1.52391 1.21733 0.94880 0.90064 0.95197 0.97361 1.21760 0.95043 0.99348 1.02694 1.19277 0.95410 0.91695 0.94902 1.21151 1.38223 1.02468 0.90620 0.91477 1.25024 0.95946 0.95295 0.98633 1.69956 1.43185 1.08058 1.33373 0.86729 0.78516 0.77391 0.85718 1.20449 1.21774 1.20495 1.22115 1.00100 0.91634 0.93896 1.21632 0.93659 0.96802 1.02479 0.88912 0.89083 0.90214 0.76352 0.91627 0.91083 0.92785 0.91403 0.90134 0.92754 0.96805 0.88239 0.93300 0.95005 0.90897 0.96904 0.95989 0.93309 0.96343 0.90762 0.92219 0.90373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.24 10.30 36.01 0.37 -0.87 16 2 C 0.51 5.81 7.90 -10.98 -0.09 5.72 16 3 O -0.55 -8.72 16.76 5.56 0.09 -8.63 16 4 N -0.72 -7.51 5.00 -53.80 -0.27 -7.78 16 5 C 0.15 1.71 2.41 -67.93 -0.16 1.55 16 6 H 0.08 1.07 7.58 -51.93 -0.39 0.68 16 7 C -0.17 -2.01 8.78 37.16 0.33 -1.68 16 8 C -0.09 -1.12 2.25 -90.50 -0.20 -1.33 16 9 C -0.11 -1.51 4.87 -26.65 -0.13 -1.64 16 10 C 0.06 1.00 5.03 -3.83 -0.02 0.98 16 11 N -0.51 -9.17 3.85 -226.69 -0.87 -10.05 16 12 C 0.09 1.77 2.34 -67.71 -0.16 1.61 16 13 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 14 C -0.13 -2.43 8.82 37.15 0.33 -2.10 16 15 C 0.02 0.59 4.19 -27.88 -0.12 0.47 16 16 C -0.49 -12.89 7.63 -34.44 -0.26 -13.15 16 17 H 0.07 1.78 6.86 -52.48 -0.36 1.42 16 18 C 0.05 1.40 5.46 -17.82 -0.10 1.30 16 19 N -0.90 -26.53 13.29 55.43 0.74 -25.80 16 20 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 C 0.05 0.75 5.25 -3.83 -0.02 0.73 16 25 C -0.11 -1.36 5.09 -26.65 -0.14 -1.49 16 26 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.40 3.39 6.93 -40.82 -0.28 3.11 16 30 H 0.06 0.81 6.37 -51.93 -0.33 0.48 16 31 H 0.07 0.83 6.38 -51.93 -0.33 0.50 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.08 1.22 6.31 -51.93 -0.33 0.89 16 35 H 0.05 0.62 6.62 -51.93 -0.34 0.28 16 36 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 37 H 0.10 2.03 5.74 -51.93 -0.30 1.73 16 38 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.03 0.50 6.33 -51.93 -0.33 0.17 16 40 H 0.07 1.48 6.91 -51.93 -0.36 1.12 16 41 H 0.01 0.33 6.37 -51.93 -0.33 0.00 16 42 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 44 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 45 H 0.07 1.08 6.07 -51.93 -0.32 0.77 16 46 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.08 1.05 6.31 -51.93 -0.33 0.72 16 LS Contribution 352.72 15.07 5.32 5.32 Total: -1.00 -31.07 352.72 -8.50 -39.57 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -8.11 Total: 0.79 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: -0.37 Total: -9.90 kcal Atomic # 7 Polarization: -43.22 SS G_CDS: -0.41 Total: -43.62 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: 0.09 Total: -8.63 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.07 -8.50 -39.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514732635.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.903 kcal (2) G-P(sol) polarization free energy of solvation -31.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds