Wall clock time and date at job start Tue Mar 31 2020 05:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21277 * 120.00390 * 2 1 4 4 N 1.34778 * 119.99457 * 179.97438 * 2 1 3 5 5 C 1.46501 * 119.99532 * 180.02562 * 4 2 1 6 6 H 1.08992 * 109.47853 * 34.99694 * 5 4 2 7 7 C 1.53001 * 109.46897 * 274.99813 * 5 4 2 8 8 C 1.53000 * 109.47018 * 155.00223 * 5 4 2 9 9 C 1.53122 * 109.52162 * 299.67705 * 8 5 4 10 10 C 1.53033 * 109.27789 * 182.44379 * 9 8 5 11 11 N 1.46846 * 109.52812 * 59.17935 * 10 9 8 12 12 C 1.46900 * 111.00258 * 174.15584 * 11 10 9 13 13 H 1.08999 * 109.47032 * 173.59767 * 12 11 10 14 14 C 1.53002 * 109.46803 * 53.60462 * 12 11 10 15 15 C 1.52990 * 109.47342 * 293.60092 * 12 11 10 16 16 C 1.50696 * 109.47466 * 295.99462 * 15 12 11 17 17 H 1.07994 * 120.00107 * 0.02562 * 16 15 12 18 18 C 1.37876 * 120.00088 * 179.97438 * 16 15 12 19 19 N 1.31520 * 120.00375 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99899 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47223 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47557 * 120.00350 * 20 18 16 23 23 H 1.48508 * 109.46964 * 239.99881 * 20 18 16 24 24 C 1.46841 * 111.19921 * 298.26177 * 11 10 9 25 25 C 1.53036 * 109.52569 * 61.73433 * 24 11 10 26 26 H 1.08998 * 109.47251 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47162 * 300.00639 * 1 2 3 28 28 H 1.09006 * 109.46500 * 60.00133 * 1 2 3 29 29 H 0.96998 * 120.00371 * 359.97438 * 4 2 1 30 30 H 1.09003 * 109.47143 * 180.02562 * 7 5 4 31 31 H 1.08993 * 109.47674 * 60.00050 * 7 5 4 32 32 H 1.09004 * 109.46916 * 299.99831 * 7 5 4 33 33 H 1.08994 * 109.52536 * 59.87039 * 8 5 4 34 34 H 1.08998 * 109.50217 * 302.38480 * 9 8 5 35 35 H 1.08994 * 109.50073 * 62.49916 * 9 8 5 36 36 H 1.08997 * 109.46168 * 299.16007 * 10 9 8 37 37 H 1.09004 * 109.46092 * 179.19688 * 10 9 8 38 38 H 1.08999 * 109.46759 * 299.99472 * 14 12 11 39 39 H 1.09004 * 109.47150 * 59.99750 * 14 12 11 40 40 H 1.09001 * 109.47080 * 179.97438 * 14 12 11 41 41 H 1.09008 * 109.47004 * 55.99902 * 15 12 11 42 42 H 1.09000 * 109.47373 * 175.99389 * 15 12 11 43 43 H 0.97000 * 120.00121 * 179.97438 * 19 18 16 44 44 H 1.09011 * 109.45853 * 301.72363 * 24 11 10 45 45 H 1.08997 * 109.46733 * 181.75786 * 24 11 10 46 46 H 1.09005 * 109.50476 * 180.88059 * 25 24 11 47 47 H 1.09002 * 109.50410 * 60.76482 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0502 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 3.6458 -1.1673 0.0011 6 1 4.0090 -0.3254 0.5904 7 6 4.1563 -1.0419 -1.4358 8 6 4.1555 -2.4745 0.6112 9 6 3.6518 -2.5974 2.0519 10 6 4.2145 -3.8762 2.6765 11 7 5.6821 -3.8286 2.6545 12 6 6.2568 -4.9755 3.3702 13 1 7.3393 -4.9781 3.2425 14 6 5.6737 -6.2728 2.8062 15 6 5.9192 -4.8692 4.8586 16 6 6.5759 -3.6421 5.4364 17 1 7.1740 -3.0018 4.8051 18 6 6.4124 -3.3363 6.7708 19 7 5.6836 -4.1157 7.5397 20 14 7.2260 -1.8148 7.4868 21 1 7.9858 -1.1122 6.4218 22 1 6.1851 -0.9077 8.0336 23 1 8.1543 -2.2154 8.5745 24 6 6.1905 -3.7581 1.2787 25 6 5.6867 -2.4759 0.6123 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5139 -0.8901 29 1 1.6958 -2.0073 0.0013 30 1 5.2463 -1.0424 -1.4354 31 1 3.7932 -0.1108 -1.8705 32 1 3.7932 -1.8840 -2.0251 33 1 3.7910 -3.3172 0.0237 34 1 3.9841 -1.7341 2.6284 35 1 2.5627 -2.6400 2.0542 36 1 3.8706 -4.7400 2.1077 37 1 3.8693 -3.9593 3.7071 38 1 4.5912 -6.2702 2.9340 39 1 5.9143 -6.3484 1.7458 40 1 6.1005 -7.1238 3.3369 41 1 4.8386 -4.7951 4.9816 42 1 6.2840 -5.7552 5.3781 43 1 5.5689 -3.9008 8.4786 44 1 5.8372 -4.6226 0.7164 45 1 7.2803 -3.7556 1.2939 46 1 6.0515 -2.4316 -0.4139 47 1 6.0510 -1.6106 1.1662 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000514732636.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:44 Heat of formation + Delta-G solvation = -56.770265 kcal Electronic energy + Delta-G solvation = -23473.871753 eV Core-core repulsion = 20269.575895 eV Total energy + Delta-G solvation = -3204.295859 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.08743 -38.89748 -36.46599 -33.95433 -32.50642 -31.40475 -30.61860 -29.40719 -28.39845 -27.28250 -24.72029 -23.21151 -22.52337 -21.51927 -20.59461 -19.75370 -18.63556 -16.95941 -16.36667 -16.13793 -15.50491 -15.26673 -14.56753 -14.38903 -14.18047 -13.92305 -13.80234 -13.31273 -13.24714 -13.15954 -12.84140 -12.43113 -12.27615 -12.16029 -12.00766 -11.77673 -11.70042 -11.39747 -11.34611 -11.01045 -10.85943 -10.54178 -10.48115 -10.38967 -10.27558 -9.99741 -9.91672 -9.77121 -9.19835 -9.08052 -8.92235 -8.24045 -7.42383 -5.87140 -3.84479 2.56513 3.14005 3.39923 3.47665 3.53466 4.50058 4.58580 4.63545 4.75641 4.88520 4.96779 4.99684 5.19856 5.31171 5.38460 5.44054 5.50315 5.56299 5.58365 5.66981 5.70737 5.78590 5.83003 5.86391 5.94947 5.95883 6.05351 6.07458 6.09932 6.16455 6.30107 6.38575 6.45196 6.48039 6.58721 6.69095 6.75979 7.00656 7.42438 7.56661 7.71232 7.95595 8.05516 8.14817 8.14977 8.60622 9.21995 9.77437 11.24906 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015864 B = 0.004467 C = 0.003959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.575843 B = 6266.130836 C = 7071.652677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.509 3.491 3 O -0.550 6.550 4 N -0.722 5.722 5 C 0.144 3.856 6 H 0.089 0.911 7 C -0.162 4.162 8 C -0.092 4.092 9 C -0.108 4.108 10 C 0.058 3.942 11 N -0.509 5.509 12 C 0.087 3.913 13 H 0.068 0.932 14 C -0.183 4.183 15 C 0.030 3.970 16 C -0.487 4.487 17 H 0.061 0.939 18 C 0.050 3.950 19 N -0.905 5.905 20 Si 0.888 3.112 21 H -0.273 1.273 22 H -0.287 1.287 23 H -0.288 1.288 24 C 0.055 3.945 25 C -0.107 4.107 26 H 0.074 0.926 27 H 0.094 0.906 28 H 0.091 0.909 29 H 0.399 0.601 30 H 0.069 0.931 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.057 0.943 36 H 0.022 0.978 37 H 0.087 0.913 38 H 0.052 0.948 39 H 0.038 0.962 40 H 0.054 0.946 41 H 0.018 0.982 42 H 0.017 0.983 43 H 0.256 0.744 44 H 0.022 0.978 45 H 0.069 0.931 46 H 0.063 0.937 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.167 1.131 -18.003 19.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.296 3.704 3 O -0.428 6.428 4 N -0.374 5.374 5 C 0.039 3.961 6 H 0.107 0.893 7 C -0.221 4.221 8 C -0.111 4.111 9 C -0.146 4.146 10 C -0.070 4.070 11 N -0.233 5.233 12 C -0.021 4.021 13 H 0.086 0.914 14 C -0.242 4.242 15 C -0.007 4.007 16 C -0.526 4.526 17 H 0.079 0.921 18 C -0.149 4.149 19 N -0.546 5.546 20 Si 0.716 3.284 21 H -0.198 1.198 22 H -0.214 1.214 23 H -0.214 1.214 24 C -0.074 4.074 25 C -0.146 4.146 26 H 0.093 0.907 27 H 0.112 0.888 28 H 0.110 0.890 29 H 0.233 0.767 30 H 0.088 0.912 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.076 0.924 36 H 0.040 0.960 37 H 0.105 0.895 38 H 0.071 0.929 39 H 0.057 0.943 40 H 0.074 0.926 41 H 0.036 0.964 42 H 0.035 0.965 43 H 0.066 0.934 44 H 0.041 0.959 45 H 0.087 0.913 46 H 0.082 0.918 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.633 2.314 -17.584 19.308 hybrid contribution -0.148 -0.426 0.102 0.463 sum -7.781 1.888 -17.481 19.228 Atomic orbital electron populations 1.21855 0.92038 1.04093 1.05152 1.20779 0.90494 0.83657 0.75436 1.90723 1.70739 1.31460 1.49844 1.46227 1.07552 1.08533 1.75103 1.21060 0.79139 0.99251 0.96607 0.89257 1.22205 1.01771 1.01759 0.96319 1.21476 0.96784 0.95802 0.97011 1.21615 0.98832 0.99785 0.94360 1.22057 0.88627 0.94876 1.01475 1.62018 1.05927 1.43142 1.12163 1.21908 0.97822 0.85110 0.97291 0.91361 1.22517 1.01506 1.00594 0.99564 1.19194 0.97102 0.97183 0.87203 1.21210 1.29449 1.08437 0.93489 0.92071 1.24997 0.95818 0.96640 0.97424 1.69975 1.40632 1.38102 1.05885 0.86599 0.79213 0.83588 0.78962 1.19763 1.21352 1.21441 1.22047 0.99688 0.95603 0.90044 1.21630 0.93611 0.99455 0.99865 0.90670 0.88751 0.89018 0.76691 0.91184 0.92485 0.92762 0.91466 0.90784 0.92438 0.96041 0.89490 0.92913 0.94272 0.92644 0.96371 0.96462 0.93433 0.95946 0.91254 0.91848 0.90731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.22 10.39 36.01 0.37 -0.85 16 2 C 0.51 5.82 7.90 -10.98 -0.09 5.73 16 3 O -0.55 -8.88 16.76 5.56 0.09 -8.79 16 4 N -0.72 -7.12 4.43 -53.81 -0.24 -7.36 16 5 C 0.14 1.63 2.16 -67.93 -0.15 1.48 16 6 H 0.09 1.26 7.58 -51.93 -0.39 0.87 16 7 C -0.16 -1.64 9.13 37.16 0.34 -1.30 16 8 C -0.09 -1.06 1.89 -90.49 -0.17 -1.23 16 9 C -0.11 -1.52 5.18 -26.65 -0.14 -1.66 16 10 C 0.06 0.96 4.53 -3.84 -0.02 0.95 16 11 N -0.51 -9.27 4.29 -226.70 -0.97 -10.24 16 12 C 0.09 1.73 2.26 -67.72 -0.15 1.57 16 13 H 0.07 1.40 7.98 -51.93 -0.41 0.98 16 14 C -0.18 -3.07 8.44 37.16 0.31 -2.75 16 15 C 0.03 0.76 4.37 -27.89 -0.12 0.64 16 16 C -0.49 -13.60 8.81 -34.44 -0.30 -13.90 16 17 H 0.06 1.72 7.74 -52.49 -0.41 1.31 16 18 C 0.05 1.45 5.46 -17.82 -0.10 1.35 16 19 N -0.90 -27.26 13.29 55.43 0.74 -26.52 16 20 Si 0.89 22.24 29.54 -169.99 -5.02 17.22 16 21 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 C 0.05 0.81 5.14 -3.84 -0.02 0.79 16 25 C -0.11 -1.35 4.95 -26.65 -0.13 -1.49 16 26 H 0.07 0.35 7.91 -51.93 -0.41 -0.06 16 27 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.40 2.90 8.25 -40.82 -0.34 2.57 16 30 H 0.07 0.67 6.49 -51.93 -0.34 0.33 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.06 0.70 7.55 -51.93 -0.39 0.31 16 36 H 0.02 0.33 6.57 -51.93 -0.34 -0.01 16 37 H 0.09 1.72 6.17 -51.93 -0.32 1.40 16 38 H 0.05 0.88 6.46 -51.93 -0.34 0.54 16 39 H 0.04 0.58 6.84 -51.93 -0.35 0.22 16 40 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.02 0.48 6.28 -51.92 -0.33 0.16 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 44 H 0.02 0.31 6.90 -51.92 -0.36 -0.04 16 45 H 0.07 1.03 8.01 -51.93 -0.42 0.61 16 46 H 0.06 0.67 6.58 -51.93 -0.34 0.32 16 47 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 359.13 15.07 5.41 5.41 Total: -1.00 -32.61 359.13 -8.77 -41.38 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -8.42 Total: -0.42 kcal Atomic # 6 Polarization: -10.32 SS G_CDS: -0.36 Total: -10.68 kcal Atomic # 7 Polarization: -43.65 SS G_CDS: -0.47 Total: -44.12 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: 0.09 Total: -8.79 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.61 -8.77 -41.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514732636.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.390 kcal (2) G-P(sol) polarization free energy of solvation -32.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds