Wall clock time and date at job start Tue Mar 31 2020 05:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.50888 * 2 1 4 4 C 1.53099 * 109.54171 * 239.88943 * 2 1 3 5 5 O 1.43017 * 109.25694 * 183.20055 * 4 2 1 6 6 C 1.43009 * 113.74499 * 58.66877 * 5 4 2 7 7 C 1.53105 * 109.25582 * 301.32958 * 6 5 4 8 8 N 1.47016 * 109.25738 * 56.84991 * 7 6 5 9 9 C 1.46899 * 111.00150 * 177.60778 * 8 7 6 10 10 C 1.53005 * 109.46777 * 293.63385 * 9 8 7 11 11 N 1.46899 * 109.46777 * 180.02562 * 10 9 8 12 12 C 1.46851 * 110.99673 * 169.99860 * 11 10 9 13 13 C 1.53038 * 109.51981 * 185.83591 * 12 11 10 14 14 C 1.53120 * 109.28130 * 300.82264 * 13 12 11 15 15 C 1.50699 * 109.52063 * 177.56267 * 14 13 12 16 16 H 1.08004 * 120.00303 * 335.33138 * 15 14 13 17 17 C 1.37883 * 119.99730 * 155.33893 * 15 14 13 18 18 N 1.31506 * 120.00009 * 355.15524 * 17 15 14 19 19 Si 1.86805 * 119.99735 * 175.15846 * 17 15 14 20 20 H 1.48494 * 109.47152 * 359.97438 * 19 17 15 21 21 H 1.48507 * 109.46798 * 239.99678 * 19 17 15 22 22 H 1.48489 * 109.47099 * 119.99945 * 19 17 15 23 23 C 1.53115 * 109.21363 * 57.62365 * 14 13 12 24 24 C 1.46844 * 111.00082 * 294.20517 * 11 10 9 25 25 H 1.09006 * 109.46671 * 299.91773 * 1 2 3 26 26 H 1.09003 * 109.46879 * 59.91121 * 1 2 3 27 27 H 1.08996 * 109.47444 * 179.91463 * 1 2 3 28 28 H 1.09002 * 109.50326 * 303.13075 * 4 2 1 29 29 H 1.08995 * 109.50427 * 63.21867 * 4 2 1 30 30 H 1.09002 * 109.50420 * 61.25915 * 6 5 4 31 31 H 1.09001 * 109.51006 * 181.35138 * 6 5 4 32 32 H 1.08994 * 109.50775 * 296.91547 * 7 6 5 33 33 H 1.09000 * 109.50527 * 176.77669 * 7 6 5 34 34 H 1.08992 * 109.47403 * 173.63343 * 9 8 7 35 35 H 1.09001 * 109.47157 * 53.62937 * 9 8 7 36 36 H 1.08992 * 109.47188 * 59.99826 * 10 9 8 37 37 H 1.09001 * 109.46911 * 299.99703 * 10 9 8 38 38 H 1.09003 * 109.46555 * 65.82667 * 12 11 10 39 39 H 1.08990 * 109.45652 * 305.84771 * 12 11 10 40 40 H 1.08997 * 109.50278 * 180.87941 * 13 12 11 41 41 H 1.09001 * 109.50359 * 60.76557 * 13 12 11 42 42 H 1.09002 * 109.51717 * 297.68472 * 14 13 12 43 43 H 0.96998 * 120.00207 * 5.18459 * 18 17 15 44 44 H 1.08998 * 109.50183 * 62.31669 * 23 14 13 45 45 H 1.08999 * 109.50140 * 182.43942 * 23 14 13 46 46 H 1.09001 * 109.46511 * 294.18059 * 24 11 10 47 47 H 1.09005 * 109.46168 * 54.15494 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0421 -0.7238 -1.2481 5 8 3.4703 -0.7858 -1.2048 6 6 3.9828 -1.4564 -0.0503 7 6 3.4903 -0.7400 1.2100 8 7 2.0209 -0.6947 1.1991 9 6 1.5046 -0.0641 2.4213 10 6 1.8257 -0.9497 3.6269 11 7 1.3088 -0.3194 4.8489 12 6 1.3852 -1.2414 5.9893 13 6 0.7079 -0.6069 7.2062 14 6 1.4086 0.7119 7.5443 15 6 0.7085 1.3710 8.7048 16 1 -0.3297 1.1506 8.9050 17 6 1.3935 2.2554 9.5109 18 7 2.6807 2.4517 9.3266 19 14 0.4929 3.1746 10.8650 20 1 -0.9385 2.7795 10.8641 21 1 0.6026 4.6366 10.6283 22 1 1.0987 2.8391 12.1785 23 6 1.3586 1.6363 6.3247 24 6 2.0156 0.9360 5.1329 25 1 -0.3633 0.5126 0.8908 26 1 -0.3633 0.5152 -0.8892 27 1 -0.3634 -1.0276 -0.0015 28 1 1.6346 -1.7344 -1.2756 29 1 1.7276 -0.1801 -2.1389 30 1 3.6316 -2.4883 -0.0430 31 1 5.0724 -1.4428 -0.0752 32 1 3.8856 0.2756 1.2293 33 1 3.8312 -1.2808 2.0928 34 1 0.4248 0.0591 2.3383 35 1 1.9726 0.9116 2.5523 36 1 2.9055 -1.0729 3.7099 37 1 1.3577 -1.9254 3.4959 38 1 2.4303 -1.4465 6.2213 39 1 0.8795 -2.1734 5.7371 40 1 0.7784 -1.2849 8.0567 41 1 -0.3408 -0.4142 6.9797 42 1 2.4472 0.5149 7.8098 43 1 3.1328 2.0328 8.5776 44 1 0.3204 1.8652 6.0840 45 1 1.8938 2.5597 6.5458 46 1 3.0578 0.7208 5.3688 47 1 1.9679 1.5855 4.2588 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000530914296.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:27 Heat of formation + Delta-G solvation = -48.259765 kcal Electronic energy + Delta-G solvation = -23257.462736 eV Core-core repulsion = 20053.535921 eV Total energy + Delta-G solvation = -3203.926816 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.07039 -38.46290 -36.34445 -34.24197 -32.89757 -31.52202 -30.06696 -29.30693 -27.48040 -26.29767 -24.53536 -22.94522 -22.69383 -22.01087 -20.85188 -20.11158 -18.94725 -16.95002 -16.64839 -16.55086 -15.77501 -15.34869 -15.20436 -14.73618 -14.58670 -13.86506 -13.74344 -13.71384 -13.57367 -13.42924 -12.81148 -12.63650 -12.42898 -12.21161 -11.90969 -11.86996 -11.50791 -11.39779 -11.35661 -10.94669 -10.75233 -10.72917 -10.65982 -10.37473 -10.35366 -10.10428 -9.82955 -9.52896 -9.13502 -8.59292 -8.39084 -8.24651 -7.88549 -6.31495 -4.01462 3.42214 3.45024 3.48228 3.61201 3.62187 4.37107 4.51570 4.55147 4.69307 4.74234 4.86381 4.95438 5.06104 5.15438 5.24448 5.32449 5.36199 5.38649 5.44322 5.52416 5.59096 5.61464 5.66133 5.70415 5.78361 5.83650 5.95367 5.97234 6.02773 6.09096 6.20471 6.34468 6.52396 6.57967 6.76405 6.78932 6.88568 6.89490 6.95879 7.10225 7.40726 7.51874 7.64760 7.74234 8.30361 8.49720 8.93048 9.70437 11.06980 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.034773 B = 0.003128 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.018837 B = 8948.602322 C = 9018.805912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.045 3.955 3 H 0.048 0.952 4 C 0.070 3.930 5 O -0.388 6.388 6 C 0.065 3.935 7 C 0.014 3.986 8 N -0.532 5.532 9 C 0.054 3.946 10 C 0.061 3.939 11 N -0.534 5.534 12 C 0.060 3.940 13 C -0.099 4.099 14 C 0.029 3.971 15 C -0.589 4.589 16 H 0.049 0.951 17 C 0.018 3.982 18 N -0.917 5.917 19 Si 1.071 2.929 20 H -0.289 1.289 21 H -0.288 1.288 22 H -0.288 1.288 23 C -0.103 4.103 24 C 0.054 3.946 25 H 0.066 0.934 26 H 0.061 0.939 27 H 0.066 0.934 28 H 0.059 0.941 29 H 0.096 0.904 30 H 0.059 0.941 31 H 0.097 0.903 32 H 0.042 0.958 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.036 0.964 36 H 0.026 0.974 37 H 0.076 0.924 38 H 0.023 0.977 39 H 0.060 0.940 40 H 0.053 0.947 41 H 0.056 0.944 42 H 0.025 0.975 43 H 0.269 0.731 44 H 0.054 0.946 45 H 0.054 0.946 46 H 0.022 0.978 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.634 -7.372 -19.584 20.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.064 4.064 3 H 0.066 0.934 4 C -0.007 4.007 5 O -0.306 6.306 6 C -0.012 4.012 7 C -0.114 4.114 8 N -0.258 5.258 9 C -0.073 4.073 10 C -0.068 4.068 11 N -0.259 5.259 12 C -0.067 4.067 13 C -0.137 4.137 14 C 0.010 3.990 15 C -0.628 4.628 16 H 0.067 0.933 17 C -0.186 4.186 18 N -0.553 5.553 19 Si 0.900 3.100 20 H -0.215 1.215 21 H -0.215 1.215 22 H -0.215 1.215 23 C -0.141 4.141 24 C -0.073 4.073 25 H 0.085 0.915 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.114 0.886 30 H 0.077 0.923 31 H 0.115 0.885 32 H 0.060 0.940 33 H 0.107 0.893 34 H 0.109 0.891 35 H 0.055 0.945 36 H 0.044 0.956 37 H 0.095 0.905 38 H 0.042 0.958 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.043 0.957 43 H 0.081 0.919 44 H 0.073 0.927 45 H 0.072 0.928 46 H 0.040 0.960 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.966 -6.610 -18.551 19.717 hybrid contribution 0.838 -0.461 -0.851 1.280 sum -0.127 -7.071 -19.402 20.651 Atomic orbital electron populations 1.21856 0.93312 1.02970 1.02369 1.22285 0.96541 0.96466 0.91082 0.93363 1.22717 0.80828 1.00339 0.96854 1.87971 1.20788 1.78559 1.43286 1.22670 0.98866 0.95651 0.84056 1.22850 0.88447 1.00473 0.99667 1.62184 1.07979 1.53570 1.02101 1.22223 1.01503 0.95524 0.88057 1.21999 0.97246 0.97903 0.89614 1.61859 1.56018 1.05263 1.02763 1.22150 0.98525 0.94573 0.91468 1.21594 0.99744 0.98476 0.93899 1.18887 0.96241 0.90866 0.92978 1.22013 0.99021 1.27794 1.13936 0.93314 1.25796 0.96009 0.96050 1.00706 1.70737 1.08796 1.44869 1.30949 0.83526 0.74698 0.76191 0.75624 1.21536 1.21456 1.21464 1.21773 0.99500 0.98906 0.93959 1.22278 0.95088 0.90799 0.99159 0.91534 0.91970 0.91506 0.92232 0.88599 0.92252 0.88526 0.93982 0.89319 0.89134 0.94534 0.95608 0.90522 0.95848 0.92130 0.92813 0.92529 0.95670 0.91949 0.92737 0.92770 0.96012 0.92405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 8.92 37.16 0.33 -0.94 16 2 C 0.04 0.45 2.59 -67.60 -0.17 0.28 16 3 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 4 C 0.07 0.64 6.30 37.21 0.23 0.87 16 5 O -0.39 -4.28 10.83 -35.23 -0.38 -4.66 16 6 C 0.06 0.61 7.01 37.21 0.26 0.87 16 7 C 0.01 0.15 5.44 -3.71 -0.02 0.13 16 8 N -0.53 -5.99 4.54 -226.33 -1.03 -7.01 16 9 C 0.05 0.69 4.67 -3.82 -0.02 0.67 16 10 C 0.06 0.86 4.90 -3.82 -0.02 0.84 16 11 N -0.53 -9.17 4.66 -234.66 -1.09 -10.26 16 12 C 0.06 1.08 5.46 -3.83 -0.02 1.06 16 13 C -0.10 -2.10 5.36 -26.65 -0.14 -2.25 16 14 C 0.03 0.72 1.89 -91.65 -0.17 0.55 16 15 C -0.59 -16.46 8.32 -34.44 -0.29 -16.75 16 16 H 0.05 1.37 7.81 -52.48 -0.41 0.96 16 17 C 0.02 0.51 5.45 -17.82 -0.10 0.42 16 18 N -0.92 -27.59 13.63 55.43 0.76 -26.84 16 19 Si 1.07 25.37 29.91 -169.99 -5.08 20.28 16 20 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 22 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 23 C -0.10 -2.32 5.37 -26.65 -0.14 -2.47 16 24 C 0.05 1.02 5.29 -3.83 -0.02 1.00 16 25 H 0.07 0.63 6.16 -51.93 -0.32 0.31 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.09 0.93 6.38 -51.93 -0.33 0.60 16 34 H 0.09 1.17 5.75 -51.93 -0.30 0.87 16 35 H 0.04 0.50 6.41 -51.93 -0.33 0.17 16 36 H 0.03 0.37 6.50 -51.93 -0.34 0.03 16 37 H 0.08 1.05 7.99 -51.93 -0.41 0.63 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.06 0.96 8.01 -51.93 -0.42 0.54 16 40 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.03 0.68 6.68 -51.93 -0.35 0.34 16 43 H 0.27 8.06 6.66 -40.82 -0.27 7.79 16 44 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 45 H 0.05 1.32 8.14 -51.93 -0.42 0.90 16 46 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.06 0.99 6.21 -51.93 -0.32 0.67 16 LS Contribution 350.38 15.07 5.28 5.28 Total: -1.00 -30.03 350.38 -10.36 -40.38 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -8.52 Total: -1.46 kcal Atomic # 6 Polarization: -15.43 SS G_CDS: -0.29 Total: -15.72 kcal Atomic # 7 Polarization: -42.74 SS G_CDS: -1.36 Total: -44.11 kcal Atomic # 8 Polarization: -4.28 SS G_CDS: -0.38 Total: -4.66 kcal Atomic # 14 Polarization: 25.37 SS G_CDS: -5.08 Total: 20.28 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.03 -10.36 -40.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000530914296.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.877 kcal (2) G-P(sol) polarization free energy of solvation -30.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds