Wall clock time and date at job start Tue Mar 31 2020 05:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47061 * 2 1 4 4 C 1.53000 * 109.46852 * 120.00000 * 2 1 3 5 5 C 1.53003 * 109.47276 * 64.99871 * 4 2 1 6 6 H 1.09000 * 109.47071 * 304.99781 * 5 4 2 7 7 C 1.53001 * 109.47122 * 184.99925 * 5 4 2 8 8 N 1.46502 * 109.46872 * 65.00234 * 5 4 2 9 9 C 1.34785 * 119.99608 * 204.99928 * 8 5 4 10 10 O 1.21585 * 119.99789 * 355.02894 * 9 8 5 11 11 N 1.34768 * 119.99595 * 175.02641 * 9 8 5 12 12 C 1.46931 * 120.62633 * 184.99555 * 11 9 8 13 13 C 1.52765 * 109.00820 * 233.58158 * 12 11 9 14 14 C 1.53037 * 109.38481 * 305.59091 * 13 12 11 15 15 C 1.50692 * 109.45024 * 181.25147 * 14 13 12 16 16 H 1.08000 * 120.00462 * 245.35640 * 15 14 13 17 17 C 1.37880 * 120.00204 * 65.35967 * 15 14 13 18 18 N 1.31517 * 119.99737 * 355.12928 * 17 15 14 19 19 Si 1.86799 * 120.00394 * 175.14062 * 17 15 14 20 20 H 1.48486 * 109.47555 * 94.99415 * 19 17 15 21 21 H 1.48508 * 109.46929 * 214.99665 * 19 17 15 22 22 H 1.48507 * 109.46788 * 334.99216 * 19 17 15 23 23 C 1.53041 * 109.53915 * 61.23501 * 14 13 12 24 24 C 1.46926 * 120.63447 * 5.27443 * 11 9 8 25 25 H 1.09005 * 109.47171 * 60.00256 * 1 2 3 26 26 H 1.09006 * 109.47302 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47334 * 300.00488 * 1 2 3 28 28 H 1.09000 * 109.47334 * 239.99511 * 2 1 3 29 29 H 1.09001 * 109.46981 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.46776 * 299.99611 * 3 2 1 31 31 H 1.08997 * 109.47202 * 60.00049 * 3 2 1 32 32 H 1.08996 * 109.47307 * 304.99942 * 4 2 1 33 33 H 1.09000 * 109.47180 * 185.00023 * 4 2 1 34 34 H 1.09003 * 109.47376 * 60.00093 * 7 5 4 35 35 H 1.08993 * 109.47206 * 180.02562 * 7 5 4 36 36 H 1.09000 * 109.47030 * 299.99881 * 7 5 4 37 37 H 0.96996 * 120.00420 * 24.99739 * 8 5 4 38 38 H 1.08999 * 109.58840 * 353.41973 * 12 11 9 39 39 H 1.09005 * 109.58437 * 113.84829 * 12 11 9 40 40 H 1.08999 * 109.56255 * 185.55508 * 13 12 11 41 41 H 1.08998 * 109.38448 * 65.51788 * 13 12 11 42 42 H 1.09005 * 109.46323 * 301.21899 * 14 13 12 43 43 H 0.96994 * 120.00282 * 180.02562 * 18 17 15 44 44 H 1.08995 * 109.50093 * 178.67945 * 23 14 13 45 45 H 1.09002 * 109.52191 * 58.60510 * 23 14 13 46 46 H 1.09004 * 109.58782 * 246.15399 * 24 11 9 47 47 H 1.08996 * 109.58740 * 6.44231 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6351 -2.1955 1.1880 6 1 0.5562 -2.2707 1.0528 7 6 2.0352 -2.8888 2.4919 8 7 2.3147 -2.8421 0.0627 9 6 1.7789 -3.9396 -0.5075 10 8 0.7809 -4.4459 -0.0322 11 7 2.3494 -4.4756 -1.6045 12 6 1.7174 -5.6045 -2.3011 13 6 2.7336 -6.7370 -2.4371 14 6 3.9977 -6.2064 -3.1172 15 6 4.9891 -7.3295 -3.2799 16 1 5.9278 -7.3027 -2.7465 17 6 4.6980 -8.3913 -4.1099 18 7 3.5178 -8.4724 -4.6845 19 14 5.9797 -9.7148 -4.4179 20 1 5.7591 -10.8453 -3.4808 21 1 5.8629 -10.2010 -5.8163 22 1 7.3361 -9.1502 -4.2018 23 6 4.6157 -5.1011 -2.2578 24 6 3.6181 -3.9464 -2.1231 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9562 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6053 -0.2618 2.1370 33 1 3.1262 -0.6444 1.2952 34 1 1.5297 -2.4077 3.3293 35 1 1.7472 -3.9391 2.4481 36 1 3.1142 -2.8136 2.6272 37 1 3.1501 -2.4805 -0.2721 38 1 0.8584 -5.9530 -1.7279 39 1 1.3935 -5.2870 -3.2923 40 1 2.3069 -7.5400 -3.0382 41 1 2.9855 -7.1178 -1.4474 42 1 3.7411 -5.8037 -4.0971 43 1 3.3128 -9.2195 -5.2680 44 1 5.5287 -4.7398 -2.7311 45 1 4.8503 -5.4964 -1.2695 46 1 3.4523 -3.4910 -3.0994 47 1 4.0115 -3.1995 -1.4336 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000541921328.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:05 Heat of formation + Delta-G solvation = -57.260302 kcal Electronic energy + Delta-G solvation = -23424.045768 eV Core-core repulsion = 20219.728659 eV Total energy + Delta-G solvation = -3204.317108 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.07165 -37.84357 -36.55150 -34.26004 -33.48811 -31.41315 -30.67041 -29.55768 -27.36913 -26.77436 -26.06296 -23.15026 -22.45396 -21.45467 -20.31749 -19.88305 -18.88665 -17.59197 -16.39033 -16.07514 -15.23898 -15.02314 -14.64488 -14.49147 -14.42854 -13.76585 -13.47473 -13.12611 -12.90539 -12.86523 -12.60404 -12.51824 -12.42156 -12.24349 -12.06929 -11.84495 -11.73358 -11.47861 -11.09262 -10.94632 -10.84444 -10.77778 -10.64594 -10.48721 -10.40233 -10.04909 -9.68318 -9.52505 -9.15387 -8.90690 -8.84985 -8.35836 -7.84133 -6.00949 -4.06577 3.08425 3.29488 3.37006 3.39881 3.63373 4.25373 4.42742 4.51244 4.69098 4.73088 5.15309 5.21593 5.29455 5.32137 5.38411 5.42933 5.50754 5.54547 5.66868 5.69970 5.75389 5.78405 5.78924 5.83480 5.95221 6.01460 6.09249 6.18767 6.22279 6.29944 6.31191 6.45913 6.53362 6.63843 6.80447 6.85868 7.01124 7.19192 7.27523 7.54538 7.72426 7.94893 8.06087 8.38614 8.42337 8.97130 9.03026 9.58239 11.05301 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.030642 B = 0.003550 C = 0.003493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.546479 B = 7885.798518 C = 8013.567249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.098 4.098 3 C -0.146 4.146 4 C -0.122 4.122 5 C 0.158 3.842 6 H 0.088 0.912 7 C -0.165 4.165 8 N -0.746 5.746 9 C 0.705 3.295 10 O -0.601 6.601 11 N -0.619 5.619 12 C 0.127 3.873 13 C -0.121 4.121 14 C 0.050 3.950 15 C -0.514 4.514 16 H 0.054 0.946 17 C 0.062 3.938 18 N -0.889 5.889 19 Si 0.889 3.111 20 H -0.282 1.282 21 H -0.286 1.286 22 H -0.275 1.275 23 C -0.124 4.124 24 C 0.114 3.886 25 H 0.052 0.948 26 H 0.060 0.940 27 H 0.052 0.948 28 H 0.073 0.927 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.064 0.936 36 H 0.053 0.947 37 H 0.392 0.608 38 H 0.076 0.924 39 H 0.055 0.945 40 H 0.098 0.902 41 H 0.037 0.963 42 H 0.029 0.971 43 H 0.260 0.740 44 H 0.060 0.940 45 H 0.051 0.949 46 H 0.061 0.939 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.553 17.395 9.304 19.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.117 4.117 3 C -0.204 4.204 4 C -0.160 4.160 5 C 0.053 3.947 6 H 0.106 0.894 7 C -0.223 4.223 8 N -0.404 5.404 9 C 0.407 3.593 10 O -0.481 6.481 11 N -0.355 5.355 12 C 0.005 3.995 13 C -0.160 4.160 14 C 0.031 3.969 15 C -0.552 4.552 16 H 0.072 0.928 17 C -0.139 4.139 18 N -0.528 5.528 19 Si 0.718 3.282 20 H -0.208 1.208 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.162 4.162 24 C -0.009 4.009 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.091 0.909 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.095 0.905 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.229 0.771 38 H 0.094 0.906 39 H 0.073 0.927 40 H 0.116 0.884 41 H 0.056 0.944 42 H 0.047 0.953 43 H 0.070 0.930 44 H 0.078 0.922 45 H 0.070 0.930 46 H 0.080 0.920 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.405 16.916 9.499 19.698 hybrid contribution 1.217 -0.643 -0.379 1.427 sum -2.189 16.273 9.120 18.782 Atomic orbital electron populations 1.21890 0.95187 1.02195 1.01402 1.21112 0.96143 0.95849 0.98551 1.21842 1.00835 0.96093 1.01615 1.21972 1.01306 0.94139 0.98568 1.20807 0.98128 0.90448 0.85314 0.89430 1.22209 1.01270 1.02016 0.96822 1.45401 1.27822 1.30477 1.36739 1.15879 0.82925 0.80329 0.80173 1.90852 1.28085 1.63793 1.65346 1.47432 1.24148 1.35876 1.28067 1.21654 0.96842 0.86138 0.94904 1.21930 0.96719 0.97116 1.00215 1.18625 0.92642 0.92065 0.93530 1.21176 1.02686 1.05045 1.26323 0.92795 1.24968 0.95240 0.97908 0.95829 1.69878 1.20166 1.31277 1.31457 0.86623 0.82081 0.82055 0.77488 1.20841 1.21215 1.19948 1.22011 0.96907 0.96188 1.01088 1.21688 0.84561 0.96598 0.98070 0.92921 0.92137 0.92860 0.90907 0.92778 0.92784 0.92847 0.90530 0.91506 0.92180 0.91733 0.92806 0.77130 0.90595 0.92673 0.88394 0.94383 0.95282 0.92988 0.92183 0.93002 0.92047 0.92353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 8.95 37.16 0.33 -1.04 16 2 C -0.10 -0.86 2.86 -90.62 -0.26 -1.11 16 3 C -0.15 -1.07 9.19 37.16 0.34 -0.73 16 4 C -0.12 -1.03 4.22 -26.73 -0.11 -1.15 16 5 C 0.16 1.83 2.40 -67.93 -0.16 1.67 16 6 H 0.09 1.17 5.86 -51.93 -0.30 0.87 16 7 C -0.16 -1.87 9.48 37.16 0.35 -1.52 16 8 N -0.75 -10.05 4.36 -58.67 -0.26 -10.31 16 9 C 0.71 12.70 8.26 -86.92 -0.72 11.98 16 10 O -0.60 -12.87 15.43 5.29 0.08 -12.79 16 11 N -0.62 -11.33 2.98 -178.76 -0.53 -11.86 16 12 C 0.13 2.59 6.41 -3.93 -0.03 2.57 16 13 C -0.12 -2.83 5.18 -26.83 -0.14 -2.97 16 14 C 0.05 1.19 2.01 -91.74 -0.18 1.01 16 15 C -0.51 -13.76 8.49 -34.44 -0.29 -14.05 16 16 H 0.05 1.43 7.75 -52.49 -0.41 1.03 16 17 C 0.06 1.68 5.36 -17.82 -0.10 1.59 16 18 N -0.89 -24.91 11.53 55.43 0.64 -24.27 16 19 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 23 C -0.12 -2.40 5.30 -26.61 -0.14 -2.54 16 24 C 0.11 1.84 6.39 -3.71 -0.02 1.81 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.66 6.46 -51.93 -0.34 0.32 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.73 7.62 -51.93 -0.40 0.33 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.92 8.10 -51.93 -0.42 0.50 16 36 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.39 4.53 6.09 -40.82 -0.25 4.28 16 38 H 0.08 1.60 6.99 -51.93 -0.36 1.24 16 39 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.10 2.55 6.30 -51.93 -0.33 2.22 16 41 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 44 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 47 H 0.06 0.75 5.64 -51.93 -0.29 0.45 16 LS Contribution 360.93 15.07 5.44 5.44 Total: -1.00 -29.87 360.93 -9.35 -39.22 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -8.57 Total: 3.04 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: -1.13 Total: -4.49 kcal Atomic # 7 Polarization: -46.29 SS G_CDS: -0.15 Total: -46.44 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: 0.08 Total: -12.79 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.87 -9.35 -39.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541921328.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.037 kcal (2) G-P(sol) polarization free energy of solvation -29.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds