Wall clock time and date at job start Tue Mar 31 2020 05:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47057 * 2 1 4 4 C 1.50696 * 109.47712 * 239.99735 * 2 1 3 5 5 H 1.07999 * 120.00319 * 240.00495 * 4 2 1 6 6 C 1.37885 * 119.99717 * 59.99878 * 4 2 1 7 7 N 1.31516 * 119.99913 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46506 * 109.47074 * 119.99711 * 2 1 3 13 13 C 1.34781 * 120.00067 * 275.00178 * 12 2 1 14 14 O 1.21281 * 119.99724 * 359.97438 * 13 12 2 15 15 C 1.50697 * 119.99965 * 179.97438 * 13 12 2 16 16 C 1.52993 * 109.46949 * 179.97438 * 15 13 12 17 17 N 1.46904 * 109.46935 * 180.02562 * 16 15 13 18 18 C 1.46897 * 111.00297 * 66.04616 * 17 16 15 19 19 C 1.46908 * 110.99887 * 190.00258 * 17 16 15 20 20 C 1.52994 * 109.47124 * 294.99985 * 19 17 16 21 21 C 1.52998 * 109.47062 * 180.02562 * 20 19 17 22 22 C 1.52996 * 109.47046 * 60.00217 * 21 20 19 23 23 C 1.53003 * 109.46920 * 299.99719 * 22 21 20 24 24 C 1.52997 * 109.46878 * 174.99823 * 19 17 16 25 25 H 1.08997 * 109.46749 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47024 * 300.00143 * 1 2 3 27 27 H 1.08998 * 109.46637 * 59.99843 * 1 2 3 28 28 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 29 29 H 0.97000 * 119.99972 * 95.00133 * 12 2 1 30 30 H 1.08996 * 109.47441 * 300.00678 * 15 13 12 31 31 H 1.09005 * 109.46714 * 60.00041 * 15 13 12 32 32 H 1.08994 * 109.47305 * 300.00298 * 16 15 13 33 33 H 1.08997 * 109.46991 * 60.00633 * 16 15 13 34 34 H 1.09009 * 109.46585 * 59.99999 * 18 17 16 35 35 H 1.08994 * 109.47056 * 179.97438 * 18 17 16 36 36 H 1.08993 * 109.47185 * 300.00826 * 18 17 16 37 37 H 1.09002 * 109.46748 * 54.99915 * 19 17 16 38 38 H 1.09007 * 109.47123 * 300.00346 * 20 19 17 39 39 H 1.09002 * 109.47146 * 59.99638 * 20 19 17 40 40 H 1.08994 * 109.47333 * 299.99949 * 21 20 19 41 41 H 1.09008 * 109.46989 * 179.97438 * 21 20 19 42 42 H 1.09007 * 109.47073 * 179.97438 * 22 21 20 43 43 H 1.08996 * 109.47774 * 59.99804 * 22 21 20 44 44 H 1.08994 * 109.47128 * 300.00066 * 23 22 21 45 45 H 1.09004 * 109.47167 * 180.02562 * 23 22 21 46 46 H 1.08999 * 109.47498 * 300.00047 * 24 19 17 47 47 H 1.08996 * 109.47516 * 60.00063 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 2.1375 -0.8596 -3.5565 8 14 0.6260 1.2797 -2.6541 9 1 -0.8019 0.8744 -2.6994 10 1 0.8491 2.1773 -1.4922 11 1 0.9774 1.9953 -3.9070 12 7 2.0183 -0.6906 1.1963 13 6 2.1470 -0.0182 2.3572 14 8 1.8590 1.1587 2.4115 15 6 2.6488 -0.7287 3.5879 16 6 2.7009 0.2546 4.7588 17 7 3.1907 -0.4378 5.9583 18 6 4.5888 -0.8562 5.7907 19 6 3.0320 0.4024 7.1528 20 6 3.9247 1.6387 7.0289 21 6 3.7600 2.5135 8.2733 22 6 4.1636 1.7154 9.5147 23 6 3.2708 0.4791 9.6386 24 6 3.4351 -0.3953 8.3946 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3632 0.5139 -0.8900 28 1 1.9028 -0.5285 -4.4375 29 1 2.2491 -1.6317 1.1527 30 1 1.9760 -1.5505 3.8327 31 1 3.6480 -1.1212 3.3987 32 1 3.3740 1.0762 4.5137 33 1 1.7020 0.6475 4.9480 34 1 5.2118 0.0208 5.6146 35 1 4.9262 -1.3657 6.6932 36 1 4.6660 -1.5333 4.9402 37 1 1.9912 0.7133 7.2427 38 1 4.9656 1.3278 6.9389 39 1 3.6376 2.2070 6.1442 40 1 2.7193 2.8244 8.3637 41 1 4.3964 3.3941 8.1852 42 1 4.0466 2.3388 10.4013 43 1 5.2043 1.4045 9.4244 44 1 2.2301 0.7900 9.7290 45 1 3.5580 -0.0893 10.5233 46 1 2.7992 -1.2762 8.4829 47 1 4.4759 -0.7063 8.3047 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000546723160.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:27 Heat of formation + Delta-G solvation = -54.082759 kcal Electronic energy + Delta-G solvation = -22719.764597 eV Core-core repulsion = 19515.585278 eV Total energy + Delta-G solvation = -3204.179320 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.85262 -38.91851 -36.15305 -34.94596 -32.40612 -31.60214 -31.00454 -29.80839 -28.72933 -26.41762 -25.17035 -23.49712 -22.65014 -21.30930 -20.46080 -19.55283 -19.46484 -17.38918 -16.32955 -15.90355 -15.67106 -15.33417 -15.08591 -14.56605 -14.49048 -14.31059 -14.10076 -13.76518 -13.17919 -13.03728 -12.66967 -12.55948 -12.49193 -12.37733 -12.18834 -11.90722 -11.79134 -11.62588 -11.32082 -11.19897 -11.15188 -10.89405 -10.80043 -10.72089 -10.50367 -10.28221 -10.17624 -9.69696 -9.21687 -9.09015 -8.74743 -8.32727 -8.11864 -6.20337 -4.22585 3.23663 3.29463 3.35786 3.40753 3.61771 4.23234 4.32549 4.43506 4.51685 4.70651 4.87244 4.95787 5.03168 5.14358 5.17740 5.18194 5.22250 5.26706 5.37112 5.40140 5.47932 5.49941 5.50084 5.68513 5.78454 5.82812 5.86480 5.87662 5.91503 5.97935 6.02389 6.08394 6.17028 6.19212 6.33162 6.40329 6.58451 6.87626 6.99318 7.00726 7.21893 7.32484 7.54429 8.17327 8.56064 8.77172 8.98223 9.40985 10.91912 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.038954 B = 0.002920 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.622995 B = 9587.844664 C = 9869.301580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.236 3.764 3 H 0.047 0.953 4 C -0.534 4.534 5 H 0.080 0.920 6 C 0.077 3.923 7 N -0.893 5.893 8 Si 0.886 3.114 9 H -0.276 1.276 10 H -0.262 1.262 11 H -0.294 1.294 12 N -0.702 5.702 13 C 0.503 3.497 14 O -0.561 6.561 15 C -0.138 4.138 16 C 0.072 3.928 17 N -0.538 5.538 18 C 0.013 3.987 19 C 0.087 3.913 20 C -0.156 4.156 21 C -0.115 4.115 22 C -0.120 4.120 23 C -0.118 4.118 24 C -0.111 4.111 25 H 0.053 0.947 26 H 0.035 0.965 27 H 0.046 0.954 28 H 0.267 0.733 29 H 0.395 0.605 30 H 0.096 0.904 31 H 0.088 0.912 32 H 0.044 0.956 33 H 0.080 0.920 34 H 0.029 0.971 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.062 0.938 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.059 0.941 44 H 0.062 0.938 45 H 0.062 0.938 46 H 0.069 0.931 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.603 0.887 24.795 25.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.132 3.868 3 H 0.065 0.935 4 C -0.572 4.572 5 H 0.098 0.902 6 C -0.126 4.126 7 N -0.530 5.530 8 Si 0.716 3.284 9 H -0.203 1.203 10 H -0.187 1.187 11 H -0.222 1.222 12 N -0.350 5.350 13 C 0.288 3.712 14 O -0.441 6.441 15 C -0.178 4.178 16 C -0.056 4.056 17 N -0.260 5.260 18 C -0.135 4.135 19 C -0.022 4.022 20 C -0.195 4.195 21 C -0.153 4.153 22 C -0.158 4.158 23 C -0.156 4.156 24 C -0.149 4.149 25 H 0.072 0.928 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.229 0.771 30 H 0.114 0.886 31 H 0.106 0.894 32 H 0.062 0.938 33 H 0.098 0.902 34 H 0.047 0.953 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.100 0.900 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.081 0.919 45 H 0.080 0.920 46 H 0.088 0.912 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.111 1.281 24.648 24.877 hybrid contribution 0.037 0.968 -0.546 1.112 sum 3.148 2.249 24.102 24.410 Atomic orbital electron populations 1.22442 0.99366 1.00821 0.99246 1.19083 0.90109 0.94644 0.82947 0.93498 1.21059 1.33198 1.14385 0.88587 0.90220 1.24844 0.95517 0.96727 0.95538 1.69873 1.44978 1.40141 0.98034 0.86864 0.80531 0.83619 0.77391 1.20301 1.18683 1.22188 1.46202 1.65140 1.13845 1.09854 1.20507 0.78327 0.87442 0.84883 1.90642 1.51710 1.16307 1.85440 1.21628 1.03188 0.99908 0.93102 1.21795 1.01167 0.94515 0.88116 1.62231 1.19861 1.40981 1.02948 1.22530 0.88638 0.99952 1.02387 1.21728 0.99597 0.90940 0.89928 1.22253 1.00929 0.97740 0.98539 1.21461 1.01583 0.97909 0.94370 1.21550 0.99637 0.96791 0.97774 1.21512 1.00121 0.96370 0.97634 1.21593 1.01785 0.98324 0.93194 0.92829 0.94572 0.93529 0.92307 0.77134 0.88573 0.89371 0.93752 0.90188 0.95272 0.91282 0.91154 0.90040 0.91705 0.91533 0.91934 0.92187 0.92197 0.92179 0.91921 0.91958 0.91179 0.91858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.65 8.97 37.16 0.33 -3.32 16 2 C 0.24 5.70 2.15 -69.08 -0.15 5.55 16 3 H 0.05 1.26 6.63 -51.93 -0.34 0.91 16 4 C -0.53 -14.58 9.31 -34.44 -0.32 -14.90 16 5 H 0.08 2.28 7.98 -52.49 -0.42 1.86 16 6 C 0.08 2.19 5.45 -17.82 -0.10 2.09 16 7 N -0.89 -26.63 13.96 55.43 0.77 -25.86 16 8 Si 0.89 22.01 24.37 -169.99 -4.14 17.87 16 9 H -0.28 -6.63 6.87 56.52 0.39 -6.25 16 10 H -0.26 -6.49 6.53 56.52 0.37 -6.12 16 11 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 12 N -0.70 -14.02 5.07 -54.93 -0.28 -14.29 16 13 C 0.50 9.43 7.79 -10.98 -0.09 9.35 16 14 O -0.56 -12.60 15.64 5.56 0.09 -12.51 16 15 C -0.14 -1.87 5.62 -27.89 -0.16 -2.03 16 16 C 0.07 0.95 3.69 -3.83 -0.01 0.93 16 17 N -0.54 -5.88 4.75 -234.89 -1.12 -7.00 16 18 C 0.01 0.13 8.51 60.06 0.51 0.64 16 19 C 0.09 0.84 2.23 -67.71 -0.15 0.69 16 20 C -0.16 -1.48 4.51 -26.74 -0.12 -1.60 16 21 C -0.12 -0.94 5.92 -26.73 -0.16 -1.09 16 22 C -0.12 -0.85 5.92 -26.73 -0.16 -1.01 16 23 C -0.12 -0.83 5.92 -26.76 -0.16 -0.99 16 24 C -0.11 -0.90 5.00 -26.76 -0.13 -1.04 16 25 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 26 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.05 1.09 3.27 -51.93 -0.17 0.92 16 28 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 29 H 0.40 6.92 8.54 -40.82 -0.35 6.57 16 30 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 31 H 0.09 1.07 6.55 -51.93 -0.34 0.73 16 32 H 0.04 0.64 6.89 -51.93 -0.36 0.28 16 33 H 0.08 1.14 7.96 -51.93 -0.41 0.73 16 34 H 0.03 0.29 6.51 -51.92 -0.34 -0.05 16 35 H 0.07 0.58 6.13 -51.93 -0.32 0.27 16 36 H 0.07 0.67 6.47 -51.93 -0.34 0.34 16 37 H 0.08 0.84 8.03 -51.93 -0.42 0.43 16 38 H 0.06 0.62 6.48 -51.92 -0.34 0.28 16 39 H 0.07 0.74 6.75 -51.93 -0.35 0.39 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 42 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 46 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.06 0.51 6.34 -51.93 -0.33 0.18 16 LS Contribution 349.56 15.07 5.27 5.27 Total: -1.00 -30.95 349.56 -8.49 -39.45 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -8.23 Total: 3.80 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: -0.86 Total: -6.72 kcal Atomic # 7 Polarization: -46.53 SS G_CDS: -0.62 Total: -47.15 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: 0.09 Total: -12.51 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.14 Total: 17.87 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.95 -8.49 -39.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000546723160.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.635 kcal (2) G-P(sol) polarization free energy of solvation -30.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds