Wall clock time and date at job start Tue Mar 31 2020 05:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.47275 * 2 1 4 4 C 1.50699 * 109.47401 * 119.99820 * 2 1 3 5 5 H 1.07996 * 120.00444 * 119.99602 * 4 2 1 6 6 C 1.37885 * 120.00104 * 300.00542 * 4 2 1 7 7 N 1.31508 * 120.00103 * 179.97438 * 6 4 2 8 8 Si 1.86799 * 119.99878 * 359.97438 * 6 4 2 9 9 H 1.48497 * 109.47157 * 90.00410 * 8 6 4 10 10 H 1.48497 * 109.47236 * 210.00815 * 8 6 4 11 11 H 1.48509 * 109.47098 * 330.00221 * 8 6 4 12 12 N 1.46496 * 109.47251 * 239.99723 * 2 1 3 13 13 C 1.34777 * 119.99657 * 85.00145 * 12 2 1 14 14 O 1.21279 * 120.00354 * 359.97438 * 13 12 2 15 15 C 1.50704 * 119.99935 * 180.02562 * 13 12 2 16 16 C 1.52997 * 109.47070 * 179.97438 * 15 13 12 17 17 N 1.46905 * 109.47053 * 179.97438 * 16 15 13 18 18 C 1.46906 * 110.99995 * 66.04702 * 17 16 15 19 19 C 1.46897 * 111.00158 * 189.99961 * 17 16 15 20 20 C 1.53010 * 109.47130 * 295.00333 * 19 17 16 21 21 C 1.52996 * 109.46983 * 180.02562 * 20 19 17 22 22 C 1.52998 * 109.47756 * 59.99588 * 21 20 19 23 23 C 1.52997 * 109.47001 * 300.00195 * 22 21 20 24 24 C 1.53001 * 109.47291 * 175.00326 * 19 17 16 25 25 H 1.08997 * 109.47081 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47170 * 299.99992 * 1 2 3 27 27 H 1.08995 * 109.47042 * 60.00019 * 1 2 3 28 28 H 0.97000 * 119.99948 * 179.97438 * 7 6 4 29 29 H 0.96994 * 120.00362 * 264.99833 * 12 2 1 30 30 H 1.09002 * 109.46866 * 59.99781 * 15 13 12 31 31 H 1.08994 * 109.47022 * 299.99836 * 15 13 12 32 32 H 1.09002 * 109.47313 * 60.00227 * 16 15 13 33 33 H 1.09005 * 109.47359 * 299.99444 * 16 15 13 34 34 H 1.08992 * 109.47459 * 183.95199 * 18 17 16 35 35 H 1.09004 * 109.47040 * 303.95350 * 18 17 16 36 36 H 1.09000 * 109.47033 * 63.95302 * 18 17 16 37 37 H 1.09003 * 109.47084 * 54.99588 * 19 17 16 38 38 H 1.09003 * 109.46528 * 299.99595 * 20 19 17 39 39 H 1.08999 * 109.47201 * 59.99481 * 20 19 17 40 40 H 1.09003 * 109.47220 * 299.99560 * 21 20 19 41 41 H 1.09003 * 109.47336 * 179.97438 * 21 20 19 42 42 H 1.08995 * 109.47236 * 180.02562 * 22 21 20 43 43 H 1.09003 * 109.46779 * 59.99702 * 22 21 20 44 44 H 1.09003 * 109.47411 * 299.99672 * 23 22 21 45 45 H 1.08999 * 109.47453 * 179.97438 * 23 22 21 46 46 H 1.08998 * 109.46689 * 299.99605 * 24 19 17 47 47 H 1.08993 * 109.47141 * 59.99616 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 2.1372 -0.8595 3.5566 8 14 0.6257 1.2798 2.6542 9 1 -0.8021 0.8743 2.6994 10 1 0.9771 1.9954 3.9070 11 1 0.8489 2.1773 1.4922 12 7 2.0183 -0.6906 -1.1961 13 6 2.1470 -0.0183 -2.3571 14 8 1.8582 1.1584 -2.4117 15 6 2.6489 -0.7288 -3.5877 16 6 2.6999 0.2542 -4.7590 17 7 3.1896 -0.4383 -5.9584 18 6 2.2339 -1.4619 -6.4025 19 6 3.4773 0.5165 -7.0370 20 6 2.1774 1.1892 -7.4829 21 6 2.4770 2.1832 -8.6067 22 6 3.0998 1.4416 -9.7912 23 6 4.3996 0.7690 -9.3453 24 6 4.1004 -0.2247 -8.2217 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.9032 -0.5279 4.4376 29 1 2.2490 -1.6317 -1.1525 30 1 1.9759 -1.5506 -3.8325 31 1 3.6479 -1.1213 -3.3985 32 1 3.3726 1.0762 -4.5144 33 1 1.7005 0.6463 -4.9481 34 1 2.6520 -2.0064 -7.2491 35 1 2.0386 -2.1557 -5.5848 36 1 1.3021 -0.9829 -6.7030 37 1 4.1730 1.2740 -6.6757 38 1 1.4818 0.4317 -7.8442 39 1 1.7335 1.7172 -6.6390 40 1 3.1728 2.9407 -8.2459 41 1 1.5509 2.6622 -8.9247 42 1 3.3136 2.1499 -10.5915 43 1 2.4040 0.6841 -10.1520 44 1 5.0955 1.5264 -8.9844 45 1 4.8432 0.2402 -10.1890 46 1 5.0264 -0.7038 -7.9040 47 1 3.4047 -0.9821 -8.5828 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000546723161.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:30 Heat of formation + Delta-G solvation = -53.755679 kcal Electronic energy + Delta-G solvation = -22722.897724 eV Core-core repulsion = 19518.732587 eV Total energy + Delta-G solvation = -3204.165136 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.85638 -38.92021 -36.15786 -34.94851 -32.40608 -31.60252 -31.00654 -29.81258 -28.73173 -26.43201 -25.17204 -23.49991 -22.65415 -21.31087 -20.46038 -19.55613 -19.46460 -17.39389 -16.33587 -15.91710 -15.56248 -15.43309 -15.09800 -14.63657 -14.49267 -14.20832 -14.07533 -13.84082 -13.15889 -13.03561 -12.73151 -12.53141 -12.49518 -12.37400 -12.19541 -11.89636 -11.84273 -11.55444 -11.32468 -11.27105 -11.12037 -10.90094 -10.79921 -10.72630 -10.50451 -10.28167 -10.17890 -9.69794 -9.21729 -9.09158 -8.74576 -8.32554 -8.12083 -6.20016 -4.22263 3.23493 3.29292 3.35886 3.40762 3.61580 4.23039 4.32675 4.43412 4.51455 4.70456 4.86984 4.95740 5.02345 5.14465 5.16221 5.17845 5.22902 5.26632 5.35854 5.39526 5.46997 5.49284 5.49617 5.67208 5.78385 5.82215 5.86516 5.87595 5.89976 5.98135 6.02861 6.08591 6.16987 6.19108 6.32191 6.39126 6.57472 6.86856 6.99202 7.00539 7.21392 7.32475 7.54411 8.17521 8.56175 8.77600 8.98209 9.41236 10.92244 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.039450 B = 0.002919 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.582903 B = 9589.523510 C = 9902.351850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.236 3.764 3 H 0.048 0.952 4 C -0.534 4.534 5 H 0.080 0.920 6 C 0.077 3.923 7 N -0.893 5.893 8 Si 0.886 3.114 9 H -0.277 1.277 10 H -0.294 1.294 11 H -0.262 1.262 12 N -0.702 5.702 13 C 0.503 3.497 14 O -0.561 6.561 15 C -0.138 4.138 16 C 0.072 3.928 17 N -0.537 5.537 18 C 0.013 3.987 19 C 0.086 3.914 20 C -0.156 4.156 21 C -0.115 4.115 22 C -0.120 4.120 23 C -0.119 4.119 24 C -0.111 4.111 25 H 0.052 0.948 26 H 0.046 0.954 27 H 0.035 0.965 28 H 0.267 0.733 29 H 0.395 0.605 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.081 0.919 33 H 0.043 0.957 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.029 0.971 37 H 0.082 0.918 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.062 0.938 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.059 0.941 44 H 0.062 0.938 45 H 0.062 0.938 46 H 0.070 0.930 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.570 0.368 -25.307 25.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.132 3.868 3 H 0.065 0.935 4 C -0.572 4.572 5 H 0.098 0.902 6 C -0.126 4.126 7 N -0.530 5.530 8 Si 0.716 3.284 9 H -0.203 1.203 10 H -0.222 1.222 11 H -0.187 1.187 12 N -0.350 5.350 13 C 0.288 3.712 14 O -0.441 6.441 15 C -0.178 4.178 16 C -0.056 4.056 17 N -0.260 5.260 18 C -0.135 4.135 19 C -0.022 4.022 20 C -0.195 4.195 21 C -0.153 4.153 22 C -0.157 4.157 23 C -0.157 4.157 24 C -0.149 4.149 25 H 0.071 0.929 26 H 0.065 0.935 27 H 0.054 0.946 28 H 0.077 0.923 29 H 0.229 0.771 30 H 0.105 0.895 31 H 0.116 0.884 32 H 0.099 0.901 33 H 0.062 0.938 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.047 0.953 37 H 0.100 0.900 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.081 0.919 45 H 0.080 0.920 46 H 0.088 0.912 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.813 0.950 -24.969 25.053 hybrid contribution -1.339 0.614 0.187 1.485 sum 0.474 1.564 -24.782 24.836 Atomic orbital electron populations 1.22443 0.99424 1.00774 0.99226 1.19081 0.90052 0.94687 0.82969 0.93455 1.21059 1.33190 1.14403 0.88572 0.90193 1.24841 0.95522 0.96712 0.95541 1.69869 1.44979 1.40123 0.98033 0.86867 0.80498 0.83644 0.77414 1.20343 1.22168 1.18675 1.46196 1.65129 1.13851 1.09855 1.20505 0.78281 0.87461 0.84910 1.90642 1.51677 1.16320 1.85454 1.21637 1.03523 0.99434 0.93250 1.21795 0.99786 0.95771 0.88243 1.62230 1.44424 1.14396 1.04938 1.22531 0.94246 0.95548 1.01191 1.21733 0.95946 0.93626 0.90898 1.22253 0.99098 0.99174 0.98938 1.21462 1.00597 0.97878 0.95390 1.21549 0.97165 0.99437 0.97589 1.21517 0.97408 0.98641 0.98094 1.21587 1.01188 0.97825 0.94271 0.92867 0.93513 0.94636 0.92305 0.77133 0.89486 0.88438 0.90101 0.93836 0.91311 0.91201 0.95272 0.89987 0.91708 0.91555 0.91905 0.92209 0.92191 0.92198 0.91886 0.91953 0.91153 0.91911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.64 8.96 37.16 0.33 -3.31 16 2 C 0.24 5.70 2.15 -69.09 -0.15 5.55 16 3 H 0.05 1.27 6.63 -51.93 -0.34 0.92 16 4 C -0.53 -14.58 9.31 -34.44 -0.32 -14.90 16 5 H 0.08 2.29 7.98 -52.49 -0.42 1.87 16 6 C 0.08 2.19 5.45 -17.82 -0.10 2.09 16 7 N -0.89 -26.64 13.96 55.43 0.77 -25.86 16 8 Si 0.89 22.00 24.37 -169.99 -4.14 17.86 16 9 H -0.28 -6.64 6.87 56.52 0.39 -6.25 16 10 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 11 H -0.26 -6.49 6.53 56.52 0.37 -6.12 16 12 N -0.70 -14.01 5.07 -54.93 -0.28 -14.29 16 13 C 0.50 9.43 7.79 -10.98 -0.09 9.34 16 14 O -0.56 -12.59 15.64 5.56 0.09 -12.50 16 15 C -0.14 -1.87 5.63 -27.88 -0.16 -2.03 16 16 C 0.07 0.95 3.69 -3.82 -0.01 0.93 16 17 N -0.54 -5.88 4.75 -234.87 -1.12 -7.00 16 18 C 0.01 0.12 8.62 60.07 0.52 0.64 16 19 C 0.09 0.84 2.23 -67.71 -0.15 0.69 16 20 C -0.16 -1.47 4.51 -26.73 -0.12 -1.59 16 21 C -0.12 -0.93 5.92 -26.73 -0.16 -1.09 16 22 C -0.12 -0.84 5.92 -26.73 -0.16 -1.00 16 23 C -0.12 -0.84 5.92 -26.76 -0.16 -1.00 16 24 C -0.11 -0.90 5.00 -26.75 -0.13 -1.04 16 25 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 26 H 0.05 1.09 3.27 -51.93 -0.17 0.92 16 27 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 29 H 0.40 6.91 8.54 -40.82 -0.35 6.56 16 30 H 0.09 1.02 6.47 -51.93 -0.34 0.68 16 31 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.08 1.17 7.96 -51.93 -0.41 0.76 16 33 H 0.04 0.62 6.89 -51.93 -0.36 0.26 16 34 H 0.07 0.57 6.33 -51.93 -0.33 0.24 16 35 H 0.07 0.65 6.30 -51.93 -0.33 0.32 16 36 H 0.03 0.28 6.28 -51.93 -0.33 -0.05 16 37 H 0.08 0.86 8.03 -51.93 -0.42 0.44 16 38 H 0.06 0.61 6.39 -51.93 -0.33 0.28 16 39 H 0.07 0.73 6.75 -51.93 -0.35 0.38 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.06 0.50 6.42 -51.93 -0.33 0.17 16 LS Contribution 349.39 15.07 5.27 5.27 Total: -1.00 -30.97 349.39 -8.48 -39.45 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -8.21 Total: 3.77 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: -0.85 Total: -6.70 kcal Atomic # 7 Polarization: -46.53 SS G_CDS: -0.62 Total: -47.15 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: 0.09 Total: -12.50 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.14 Total: 17.86 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.97 -8.48 -39.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000546723161.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.305 kcal (2) G-P(sol) polarization free energy of solvation -30.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds