Wall clock time and date at job start Tue Mar 31 2020 05:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.50397 * 2 1 4 4 C 1.53091 * 109.50626 * 239.91461 * 2 1 3 5 5 N 1.47010 * 109.25918 * 183.21440 * 4 2 1 6 6 C 1.46902 * 111.00137 * 182.38953 * 5 4 2 7 7 C 1.53000 * 109.47157 * 170.00154 * 6 5 4 8 8 N 1.46900 * 109.47272 * 180.02562 * 7 6 5 9 9 C 1.46848 * 110.99918 * 169.99731 * 8 7 6 10 10 C 1.53037 * 109.52381 * 174.15634 * 9 8 7 11 11 C 1.53123 * 109.27398 * 59.18254 * 10 9 8 12 12 C 1.50697 * 109.52144 * 182.37768 * 11 10 9 13 13 H 1.08002 * 120.00183 * 359.87142 * 12 11 10 14 14 C 1.37886 * 119.99978 * 179.87413 * 12 11 10 15 15 N 1.31514 * 119.99643 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99848 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47159 * 60.00076 * 16 14 12 18 18 H 1.48500 * 109.46656 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47079 * 299.99819 * 16 14 12 20 20 C 1.53120 * 109.21163 * 302.31409 * 11 10 9 21 21 C 1.46845 * 111.00045 * 45.79142 * 8 7 6 22 22 C 1.47020 * 110.74973 * 58.61820 * 5 4 2 23 23 C 1.53102 * 109.25560 * 301.38180 * 22 5 4 24 24 O 1.43008 * 109.25813 * 56.85129 * 23 22 5 25 25 H 1.09008 * 109.47165 * 180.08603 * 1 2 3 26 26 H 1.08999 * 109.47032 * 300.08408 * 1 2 3 27 27 H 1.08991 * 109.47466 * 60.08504 * 1 2 3 28 28 H 1.08997 * 109.51008 * 63.28079 * 4 2 1 29 29 H 1.09000 * 109.50807 * 303.15322 * 4 2 1 30 30 H 1.09001 * 109.46895 * 50.00794 * 6 5 4 31 31 H 1.08995 * 109.47534 * 290.00093 * 6 5 4 32 32 H 1.09002 * 109.47284 * 60.00043 * 7 6 5 33 33 H 1.09007 * 109.47246 * 300.00483 * 7 6 5 34 34 H 1.09006 * 109.46097 * 54.14433 * 9 8 7 35 35 H 1.08996 * 109.46046 * 294.17217 * 9 8 7 36 36 H 1.08996 * 109.50616 * 299.24564 * 10 9 8 37 37 H 1.08992 * 109.50671 * 179.12200 * 10 9 8 38 38 H 1.09002 * 109.52319 * 62.25202 * 11 10 9 39 39 H 0.97000 * 119.99912 * 179.97438 * 15 14 12 40 40 H 1.09004 * 109.49930 * 177.63007 * 20 11 10 41 41 H 1.08997 * 109.50353 * 297.74224 * 20 11 10 42 42 H 1.09003 * 109.45905 * 305.85870 * 21 8 7 43 43 H 1.09002 * 109.46166 * 65.83312 * 21 8 7 44 44 H 1.08993 * 109.50485 * 61.32030 * 22 5 4 45 45 H 1.09004 * 109.50499 * 181.45084 * 22 5 4 46 46 H 1.08999 * 109.50492 * 296.91333 * 23 22 5 47 47 H 1.08999 * 109.53632 * 176.80553 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0412 -0.7234 -1.2486 5 7 3.5092 -0.7879 -1.2048 6 6 4.0446 -1.4259 -2.4149 7 6 5.5644 -1.2538 -2.4524 8 7 6.0997 -1.8912 -3.6628 9 6 7.5139 -1.5468 -3.8574 10 6 8.0755 -2.3402 -5.0394 11 6 7.2717 -2.0071 -6.2994 12 6 7.7824 -2.8290 -7.4546 13 1 8.6002 -3.5189 -7.3067 14 6 7.2058 -2.7004 -8.7005 15 7 6.2097 -1.8607 -8.8804 16 14 7.8385 -3.7198 -10.1322 17 1 7.6906 -5.1631 -9.8158 18 1 7.0558 -3.3984 -11.3526 19 1 9.2715 -3.4087 -10.3663 20 6 5.7950 -2.3299 -6.0550 21 6 5.2997 -1.5366 -4.8421 22 6 3.9639 -1.4884 0.0052 23 6 3.4334 -0.7573 1.2413 24 8 2.0076 -0.6767 1.1660 25 1 -0.3634 -1.0277 0.0015 26 1 -0.3633 0.5151 0.8892 27 1 -0.3634 0.5125 -0.8906 28 1 1.7273 -0.1787 -2.1390 29 1 1.6331 -1.7337 -1.2767 30 1 3.6043 -0.9598 -3.2964 31 1 3.7994 -2.4879 -2.4046 32 1 6.0047 -1.7197 -1.5709 33 1 5.8096 -0.1917 -2.4627 34 1 8.0749 -1.7925 -2.9557 35 1 7.6031 -0.4798 -4.0611 36 1 7.9991 -3.4073 -4.8307 37 1 9.1208 -2.0728 -5.1934 38 1 7.3794 -0.9473 -6.5306 39 1 5.8043 -1.7699 -9.7569 40 1 5.2121 -2.0552 -6.9342 41 1 5.6828 -3.3968 -5.8622 42 1 4.2525 -1.7748 -4.6555 43 1 5.3995 -0.4695 -5.0411 44 1 3.5866 -2.5109 -0.0028 45 1 5.0535 -1.5020 0.0301 46 1 3.8534 0.2479 1.2778 47 1 3.7200 -1.3044 2.1394 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000548783690.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:45 Heat of formation + Delta-G solvation = -44.218632 kcal Electronic energy + Delta-G solvation = -23037.119861 eV Core-core repulsion = 19833.368282 eV Total energy + Delta-G solvation = -3203.751579 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.93166 -38.36484 -36.10063 -33.86251 -33.04091 -31.58675 -29.85993 -29.24067 -28.08820 -25.82214 -24.48154 -23.53957 -22.37176 -21.75078 -20.63963 -20.12735 -18.58082 -16.68714 -16.59126 -16.31214 -15.68986 -15.33915 -14.98683 -14.86383 -14.43023 -14.19774 -13.93607 -13.50104 -13.13202 -12.89700 -12.66727 -12.56281 -12.47841 -12.22926 -12.07585 -11.83234 -11.48952 -11.38903 -11.30410 -10.91211 -10.73444 -10.72305 -10.57660 -10.41872 -10.19237 -9.96798 -9.77386 -9.39574 -8.94193 -8.67904 -8.52430 -8.27269 -7.72783 -5.95525 -4.00773 3.33753 3.38148 3.41107 3.46692 3.61017 4.46177 4.51966 4.59503 4.74927 4.78608 4.90436 4.99447 5.11520 5.22693 5.28829 5.34444 5.36045 5.36295 5.46701 5.59695 5.64526 5.71097 5.74163 5.80593 5.87072 5.88590 5.95517 6.05035 6.15206 6.24934 6.33275 6.61133 6.64790 6.79844 6.82689 6.87459 6.97990 7.09929 7.18599 7.45859 7.63335 7.70913 7.84933 8.06996 8.17727 8.50350 9.02647 9.63338 11.10557 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.034515 B = 0.003069 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.037934 B = 9120.881924 C = 9719.375523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.089 3.911 3 H 0.066 0.934 4 C 0.024 3.976 5 N -0.538 5.538 6 C 0.053 3.947 7 C 0.060 3.940 8 N -0.536 5.536 9 C 0.062 3.938 10 C -0.106 4.106 11 C 0.048 3.952 12 C -0.511 4.511 13 H 0.053 0.947 14 C 0.060 3.940 15 N -0.892 5.892 16 Si 0.890 3.110 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.278 1.278 20 C -0.104 4.104 21 C 0.052 3.948 22 C 0.014 3.986 23 C 0.065 3.935 24 O -0.385 6.385 25 H 0.062 0.938 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.043 0.957 30 H 0.082 0.918 31 H 0.044 0.956 32 H 0.066 0.934 33 H 0.035 0.965 34 H 0.056 0.944 35 H 0.024 0.976 36 H 0.056 0.944 37 H 0.050 0.950 38 H 0.020 0.980 39 H 0.259 0.741 40 H 0.092 0.908 41 H 0.042 0.958 42 H 0.058 0.942 43 H 0.023 0.977 44 H 0.043 0.957 45 H 0.089 0.911 46 H 0.058 0.942 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.387 3.800 17.959 20.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.031 3.969 3 H 0.084 0.916 4 C -0.104 4.104 5 N -0.264 5.264 6 C -0.074 4.074 7 C -0.068 4.068 8 N -0.262 5.262 9 C -0.065 4.065 10 C -0.144 4.144 11 C 0.029 3.971 12 C -0.549 4.549 13 H 0.072 0.928 14 C -0.140 4.140 15 N -0.532 5.532 16 Si 0.718 3.282 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.204 1.204 20 C -0.142 4.142 21 C -0.076 4.076 22 C -0.114 4.114 23 C -0.012 4.012 24 O -0.305 6.305 25 H 0.081 0.919 26 H 0.084 0.916 27 H 0.092 0.908 28 H 0.104 0.896 29 H 0.061 0.939 30 H 0.101 0.899 31 H 0.063 0.937 32 H 0.084 0.916 33 H 0.053 0.947 34 H 0.075 0.925 35 H 0.043 0.957 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.038 0.962 39 H 0.069 0.931 40 H 0.110 0.890 41 H 0.061 0.939 42 H 0.076 0.924 43 H 0.041 0.959 44 H 0.061 0.939 45 H 0.107 0.893 46 H 0.076 0.924 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -8.479 3.763 18.021 20.269 hybrid contribution 0.303 -0.410 -1.212 1.315 sum -8.177 3.353 16.809 18.991 Atomic orbital electron populations 1.21753 0.92841 1.02982 1.02657 1.22155 0.94752 0.95621 0.84329 0.91569 1.22803 0.87957 1.00310 0.99335 1.62190 1.08576 1.53097 1.02506 1.22303 0.95707 0.97665 0.91760 1.22006 0.93375 0.97295 0.94128 1.62069 1.02992 1.58423 1.02684 1.22098 0.87943 0.97552 0.98933 1.21677 0.98535 0.99220 0.94980 1.18677 0.91130 0.96500 0.90756 1.21183 1.16999 1.23083 0.93613 0.92827 1.24971 0.95052 0.95373 0.98634 1.69864 1.23983 1.36341 1.22985 0.86694 0.78861 0.80774 0.81865 1.20332 1.21382 1.20377 1.21692 1.00207 0.97630 0.94717 1.22399 0.96043 0.97887 0.91225 1.22851 1.01558 0.96312 0.90676 1.22645 0.80888 1.00339 0.97291 1.87965 1.21186 1.78438 1.42864 0.91864 0.91622 0.90829 0.89609 0.93887 0.89947 0.93737 0.91558 0.94677 0.92550 0.95749 0.92520 0.93176 0.96188 0.93072 0.88955 0.93920 0.92361 0.95921 0.93870 0.89253 0.92365 0.88527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 9.57 37.16 0.36 -0.77 16 2 C 0.09 0.88 3.43 -26.68 -0.09 0.79 16 3 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 4 C 0.02 0.26 4.93 -3.72 -0.02 0.24 16 5 N -0.54 -6.44 4.73 -234.31 -1.11 -7.55 16 6 C 0.05 0.72 4.21 -3.82 -0.02 0.70 16 7 C 0.06 0.89 5.21 -3.82 -0.02 0.87 16 8 N -0.54 -9.61 4.81 -234.58 -1.13 -10.73 16 9 C 0.06 1.14 5.42 -3.83 -0.02 1.12 16 10 C -0.11 -2.25 5.32 -26.65 -0.14 -2.40 16 11 C 0.05 1.20 2.16 -91.65 -0.20 1.00 16 12 C -0.51 -14.11 8.56 -34.44 -0.29 -14.40 16 13 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 14 C 0.06 1.68 5.31 -17.82 -0.09 1.58 16 15 N -0.89 -25.48 11.36 55.43 0.63 -24.85 16 16 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 C -0.10 -2.47 5.13 -26.58 -0.14 -2.61 16 21 C 0.05 1.01 4.85 -3.77 -0.02 0.99 16 22 C 0.01 0.15 5.44 -3.71 -0.02 0.13 16 23 C 0.07 0.62 7.01 37.21 0.26 0.88 16 24 O -0.39 -4.33 10.47 -35.23 -0.37 -4.70 16 25 H 0.06 0.51 8.14 -51.92 -0.42 0.08 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.09 0.86 8.09 -51.93 -0.42 0.44 16 29 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.08 1.16 6.10 -51.93 -0.32 0.85 16 31 H 0.04 0.63 8.12 -51.93 -0.42 0.21 16 32 H 0.07 0.90 6.52 -51.93 -0.34 0.56 16 33 H 0.03 0.53 8.08 -51.93 -0.42 0.12 16 34 H 0.06 0.91 8.12 -51.93 -0.42 0.49 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 37 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 40 H 0.09 2.43 6.16 -51.93 -0.32 2.11 16 41 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.06 1.04 5.81 -51.93 -0.30 0.74 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.09 0.90 6.38 -51.93 -0.33 0.57 16 46 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 352.18 15.07 5.31 5.31 Total: -1.00 -28.94 352.18 -10.89 -39.83 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -8.75 Total: -1.82 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: -0.45 Total: -11.86 kcal Atomic # 7 Polarization: -41.53 SS G_CDS: -1.61 Total: -43.13 kcal Atomic # 8 Polarization: -4.33 SS G_CDS: -0.37 Total: -4.70 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -28.94 -10.89 -39.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548783690.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.384 kcal (2) G-P(sol) polarization free energy of solvation -28.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds