Wall clock time and date at job start Tue Mar 31 2020 05:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 C 1.52995 * 117.50095 * 128.62334 * 4 2 1 6 6 C 1.52996 * 117.49906 * 59.99887 * 4 2 1 7 7 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 8 8 C 1.46502 * 119.99711 * 60.00297 * 7 2 1 9 9 C 1.34769 * 120.00163 * 240.00131 * 7 2 1 10 10 O 1.21590 * 120.00352 * 359.97438 * 9 7 2 11 11 N 1.34776 * 120.00223 * 179.97438 * 9 7 2 12 12 C 1.46497 * 120.00424 * 179.97438 * 11 9 7 13 13 C 1.53000 * 109.47349 * 180.02562 * 12 11 9 14 14 C 1.53005 * 109.47056 * 299.99954 * 13 12 11 15 15 C 1.53001 * 109.47219 * 59.99873 * 13 12 11 16 16 C 1.53004 * 109.47307 * 180.02562 * 13 12 11 17 17 C 1.50693 * 109.47229 * 179.97438 * 16 13 12 18 18 H 1.08001 * 120.00105 * 0.02562 * 17 16 13 19 19 C 1.37875 * 120.00388 * 179.97438 * 17 16 13 20 20 N 1.31513 * 119.99455 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00454 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47103 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47075 * 120.00422 * 21 19 17 24 24 H 1.48505 * 109.47222 * 240.00236 * 21 19 17 25 25 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 28 28 H 1.08998 * 115.54608 * 274.32570 * 4 2 1 29 29 H 1.09000 * 117.49885 * 359.97438 * 5 4 2 30 30 H 1.08994 * 117.50251 * 145.02269 * 5 4 2 31 31 H 1.09000 * 117.49556 * 214.98390 * 6 4 2 32 32 H 1.08998 * 117.49880 * 359.97438 * 6 4 2 33 33 H 1.08993 * 109.47565 * 90.00263 * 8 7 2 34 34 H 1.09007 * 109.46761 * 210.00296 * 8 7 2 35 35 H 1.09002 * 109.46792 * 329.99948 * 8 7 2 36 36 H 0.97006 * 119.99905 * 359.97438 * 11 9 7 37 37 H 1.09001 * 109.47414 * 300.00283 * 12 11 9 38 38 H 1.09004 * 109.47118 * 60.00088 * 12 11 9 39 39 H 1.09001 * 109.46819 * 60.00179 * 14 13 12 40 40 H 1.08993 * 109.47109 * 179.97438 * 14 13 12 41 41 H 1.08996 * 109.47003 * 300.00194 * 14 13 12 42 42 H 1.09001 * 109.46740 * 60.00390 * 15 13 12 43 43 H 1.08995 * 109.46808 * 180.02562 * 15 13 12 44 44 H 1.08995 * 109.47081 * 300.00052 * 15 13 12 45 45 H 1.08995 * 109.46471 * 299.99895 * 16 13 12 46 46 H 1.09000 * 109.46648 * 59.99466 * 16 13 12 47 47 H 0.97007 * 120.00379 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 3.0741 0.0052 -2.1117 6 6 1.6357 -0.1493 -2.6096 7 7 2.0184 -0.6906 1.1961 8 6 1.6645 -2.0933 1.4279 9 6 2.7932 -0.0357 2.0832 10 8 3.0873 1.1283 1.8907 11 7 3.2421 -0.6709 3.1839 12 6 4.0848 0.0409 4.1480 13 6 4.4544 -0.9012 5.2955 14 6 3.1794 -1.3829 5.9907 15 6 5.2189 -2.1050 4.7410 16 6 5.3340 -0.1577 6.3027 17 6 5.6975 -1.0854 7.4332 18 1 5.3376 -2.1037 7.4332 19 6 6.4905 -0.6347 8.4671 20 7 6.9292 0.6051 8.4669 21 14 6.9417 -1.7849 9.8681 22 1 6.3272 -3.1161 9.6330 23 1 8.4183 -1.9268 9.9361 24 1 6.4387 -1.2262 11.1488 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 2.1267 -1.8044 -1.1643 29 1 3.3909 0.9971 -1.7893 30 1 3.8415 -0.6000 -2.5943 31 1 1.4568 -0.8564 -3.4197 32 1 1.0060 0.7403 -2.6145 33 1 2.4158 -2.7377 0.9716 34 1 1.6239 -2.2853 2.5001 35 1 0.6905 -2.3002 0.9845 36 1 3.0072 -1.5994 3.3378 37 1 4.9934 0.3837 3.6529 38 1 3.5404 0.8987 4.5427 39 1 2.5524 -1.9126 5.2733 40 1 3.4426 -2.0544 6.8078 41 1 2.6348 -0.5254 6.3857 42 1 6.1272 -1.7618 4.2458 43 1 5.4817 -2.7763 5.5585 44 1 4.5919 -2.6346 4.0238 45 1 6.2423 0.1858 5.8077 46 1 4.7890 0.6997 6.6976 47 1 7.4868 0.9225 9.1945 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000554618755.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:26 Heat of formation + Delta-G solvation = -18.828690 kcal Electronic energy + Delta-G solvation = -23030.662360 eV Core-core repulsion = 19828.011772 eV Total energy + Delta-G solvation = -3202.650588 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.27955 -38.21480 -36.99414 -35.15252 -33.57771 -32.11553 -30.53793 -27.20756 -26.95995 -26.49432 -26.07680 -24.21811 -22.74647 -22.47523 -20.59668 -19.36943 -18.79064 -17.45859 -16.71760 -16.27664 -15.73290 -15.22760 -14.69932 -14.54397 -14.24175 -14.02324 -13.75052 -13.30345 -13.03038 -12.93401 -12.79547 -12.56499 -12.38167 -12.18897 -12.05464 -12.04130 -11.62586 -11.13844 -11.03004 -11.00693 -10.82562 -10.66639 -10.62955 -10.37719 -10.23970 -10.19951 -9.90365 -9.85680 -9.18303 -8.89903 -8.85452 -8.41313 -8.34941 -5.98772 -3.99922 2.72056 3.30691 3.38771 3.40492 3.41076 3.60462 4.15692 4.40574 4.46468 4.69633 4.77393 4.88534 5.04989 5.12216 5.17771 5.33083 5.36860 5.38913 5.43780 5.52547 5.54144 5.67124 5.69911 5.74318 5.77643 5.91883 5.94008 6.05532 6.19632 6.23948 6.30422 6.44160 6.53129 6.63288 6.64696 6.84096 7.05035 7.09056 7.09388 7.17234 7.66459 7.78828 8.00194 8.15552 8.42161 8.81863 9.05162 9.63112 11.12755 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.038321 B = 0.003097 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.485935 B = 9040.048212 C = 9180.955008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.183 3.817 3 H 0.102 0.898 4 C -0.164 4.164 5 C -0.175 4.175 6 C -0.174 4.174 7 N -0.629 5.629 8 C 0.078 3.922 9 C 0.703 3.297 10 O -0.594 6.594 11 N -0.736 5.736 12 C 0.146 3.854 13 C -0.072 4.072 14 C -0.125 4.125 15 C -0.125 4.125 16 C 0.036 3.964 17 C -0.510 4.510 18 H 0.060 0.940 19 C 0.055 3.945 20 N -0.894 5.894 21 Si 0.888 3.112 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.285 1.285 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.067 0.933 28 H 0.104 0.896 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.053 0.947 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.394 0.606 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.026 0.974 40 H 0.066 0.934 41 H 0.047 0.953 42 H 0.047 0.953 43 H 0.066 0.934 44 H 0.027 0.973 45 H 0.019 0.981 46 H 0.019 0.981 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.797 -6.035 -18.710 23.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.079 3.921 3 H 0.120 0.880 4 C -0.183 4.183 5 C -0.212 4.212 6 C -0.212 4.212 7 N -0.367 5.367 8 C -0.066 4.066 9 C 0.404 3.596 10 O -0.472 6.472 11 N -0.392 5.392 12 C 0.022 3.978 13 C -0.073 4.073 14 C -0.183 4.183 15 C -0.183 4.183 16 C -0.001 4.001 17 C -0.548 4.548 18 H 0.078 0.922 19 C -0.145 4.145 20 N -0.534 5.534 21 Si 0.717 3.283 22 H -0.198 1.198 23 H -0.212 1.212 24 H -0.211 1.211 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.086 0.914 28 H 0.122 0.878 29 H 0.116 0.884 30 H 0.110 0.890 31 H 0.112 0.888 32 H 0.114 0.886 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.230 0.770 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.045 0.955 40 H 0.085 0.915 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.085 0.915 44 H 0.046 0.954 45 H 0.037 0.963 46 H 0.037 0.963 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.457 -5.054 -18.705 23.035 hybrid contribution 0.251 -1.152 0.915 1.492 sum -12.206 -6.206 -17.791 22.450 Atomic orbital electron populations 1.22118 0.94969 1.02193 1.02372 1.20416 0.93283 0.97049 0.81345 0.87954 1.22639 1.04550 0.99553 0.91568 1.23019 0.92309 1.02381 1.03510 1.22925 0.98491 1.03198 0.96560 1.46989 1.54136 1.12150 1.23434 1.21665 1.01043 0.82254 1.01597 1.15939 0.78820 0.84761 0.80076 1.90889 1.63219 1.15611 1.77493 1.45513 1.55061 1.15759 1.22910 1.21490 0.93177 0.94816 0.88304 1.20914 0.96574 0.95412 0.94390 1.21748 0.95978 1.00881 0.99665 1.21745 0.98890 0.97849 0.99795 1.19090 0.93725 0.95144 0.92190 1.21220 1.30420 0.97746 1.05422 0.92222 1.25016 0.96262 0.95008 0.98259 1.69978 1.35484 1.15366 1.32541 0.86597 0.78154 0.81083 0.82505 1.19820 1.21152 1.21146 0.92135 0.92333 0.91434 0.87763 0.88449 0.88966 0.88837 0.88643 0.92885 0.91487 0.90829 0.76962 0.92050 0.92060 0.95471 0.91469 0.93351 0.93358 0.91488 0.95417 0.96305 0.96304 0.93106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 9.01 37.16 0.33 -1.02 16 2 C 0.18 1.99 2.87 -67.93 -0.20 1.80 16 3 H 0.10 1.38 6.65 -51.93 -0.35 1.03 16 4 C -0.16 -1.49 5.22 -90.62 -0.47 -1.97 16 5 C -0.18 -1.63 10.18 -26.73 -0.27 -1.91 16 6 C -0.17 -1.31 9.73 -26.73 -0.26 -1.57 16 7 N -0.63 -7.67 2.76 -179.67 -0.50 -8.16 16 8 C 0.08 0.67 9.18 59.85 0.55 1.22 16 9 C 0.70 11.46 8.28 -86.93 -0.72 10.74 16 10 O -0.59 -12.05 15.67 5.29 0.08 -11.97 16 11 N -0.74 -11.40 4.82 -65.23 -0.31 -11.71 16 12 C 0.15 2.68 4.56 -4.04 -0.02 2.66 16 13 C -0.07 -1.39 0.54 -154.50 -0.08 -1.48 16 14 C -0.13 -2.22 8.05 37.16 0.30 -1.92 16 15 C -0.13 -2.23 8.05 37.16 0.30 -1.93 16 16 C 0.04 0.89 4.04 -27.88 -0.11 0.78 16 17 C -0.51 -13.56 7.65 -34.44 -0.26 -13.82 16 18 H 0.06 1.53 5.68 -52.49 -0.30 1.23 16 19 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 20 N -0.89 -26.52 13.29 55.43 0.74 -25.78 16 21 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 22 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.43 6.66 -51.93 -0.35 0.08 16 27 H 0.07 0.48 7.29 -51.93 -0.38 0.11 16 28 H 0.10 0.90 7.43 -51.93 -0.39 0.51 16 29 H 0.10 1.02 8.05 -51.93 -0.42 0.60 16 30 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.10 0.67 7.61 -51.93 -0.39 0.27 16 33 H 0.05 0.42 8.07 -51.93 -0.42 0.00 16 34 H 0.07 0.56 6.36 -51.92 -0.33 0.23 16 35 H 0.07 0.49 6.43 -51.93 -0.33 0.16 16 36 H 0.39 5.19 3.89 -40.82 -0.16 5.03 16 37 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.03 0.39 6.86 -51.93 -0.36 0.03 16 40 H 0.07 1.27 6.62 -51.93 -0.34 0.93 16 41 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.07 1.27 6.62 -51.93 -0.34 0.93 16 44 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 45 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 362.88 15.07 5.47 5.47 Total: -1.00 -31.48 362.88 -8.71 -40.18 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -8.15 Total: 2.72 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: -1.01 Total: -6.95 kcal Atomic # 7 Polarization: -45.58 SS G_CDS: -0.07 Total: -45.66 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: 0.08 Total: -11.97 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.48 -8.71 -40.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554618755.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.354 kcal (2) G-P(sol) polarization free energy of solvation -31.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds