Wall clock time and date at job start Tue Mar 31 2020 05:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.47070 * 2 1 4 4 C 1.46506 * 120.00239 * 90.00054 * 3 2 1 5 5 C 1.53000 * 109.46992 * 269.72138 * 4 3 2 6 6 H 1.09006 * 109.90260 * 65.34749 * 5 4 3 7 7 C 1.53989 * 109.91834 * 186.45168 * 5 4 3 8 8 C 1.54594 * 105.13833 * 120.58056 * 7 5 4 9 9 C 1.54932 * 102.92473 * 21.95388 * 8 7 5 10 10 N 1.47904 * 109.91786 * 304.04392 * 5 4 3 11 11 C 1.46901 * 110.99912 * 94.80307 * 10 5 4 12 12 C 1.52999 * 109.47075 * 170.00153 * 11 10 5 13 13 C 1.34777 * 119.99828 * 269.71859 * 3 2 1 14 14 O 1.21284 * 119.99754 * 180.27842 * 13 3 2 15 15 C 1.50696 * 120.00137 * 0.28058 * 13 3 2 16 16 C 1.53002 * 109.47300 * 179.97438 * 15 13 3 17 17 C 1.50696 * 109.46919 * 179.97438 * 16 15 13 18 18 H 1.07999 * 120.00202 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99746 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99981 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99781 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47364 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47233 * 120.00156 * 21 19 17 24 24 H 1.48500 * 109.46997 * 239.99759 * 21 19 17 25 25 H 1.08994 * 109.47777 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47116 * 300.00653 * 1 2 3 27 27 H 1.09001 * 109.47317 * 59.99875 * 1 2 3 28 28 H 1.08993 * 109.47367 * 239.99327 * 2 1 3 29 29 H 1.09001 * 109.46864 * 119.99501 * 2 1 3 30 30 H 1.09000 * 109.46803 * 29.71572 * 4 3 2 31 31 H 1.09000 * 109.47214 * 149.72366 * 4 3 2 32 32 H 1.08998 * 110.31315 * 239.49567 * 7 5 4 33 33 H 1.09000 * 110.30614 * 1.66382 * 7 5 4 34 34 H 1.09002 * 110.72369 * 140.32071 * 8 7 5 35 35 H 1.09007 * 110.72027 * 263.59832 * 8 7 5 36 36 H 1.09010 * 110.66460 * 81.02228 * 9 8 7 37 37 H 1.08998 * 110.67046 * 203.98347 * 9 8 7 38 38 H 1.09005 * 109.47014 * 289.99512 * 11 10 5 39 39 H 1.08994 * 109.47459 * 49.99765 * 11 10 5 40 40 H 1.08996 * 109.47597 * 179.97438 * 12 11 10 41 41 H 1.09007 * 109.47055 * 299.99937 * 12 11 10 42 42 H 1.09008 * 109.47118 * 59.99398 * 12 11 10 43 43 H 1.09004 * 109.47043 * 299.99732 * 15 13 3 44 44 H 1.09000 * 109.46978 * 59.99653 * 15 13 3 45 45 H 1.09000 * 109.46497 * 299.99731 * 16 15 13 46 46 H 1.08987 * 109.47025 * 59.99846 * 16 15 13 47 47 H 0.96996 * 119.99730 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 1.2687 5 6 0.9895 2.7988 1.7069 6 1 0.2063 2.0741 1.9295 7 6 1.2782 3.6584 2.9515 8 6 0.9369 5.1061 2.5304 9 6 -0.0270 4.9012 1.3348 10 7 0.5416 3.7187 0.6388 11 6 -0.4645 3.0787 -0.2193 12 6 -1.0830 4.1257 -1.1479 13 6 2.2483 2.0146 -1.1672 14 8 2.6574 3.1564 -1.1672 15 6 1.9972 1.3042 -2.4723 16 6 2.3346 2.2394 -3.6352 17 6 2.0841 1.5287 -4.9403 18 1 1.7201 0.5119 -4.9402 19 6 2.3185 2.1771 -6.1344 20 7 2.7612 3.4154 -6.1344 21 14 2.0072 1.2964 -7.7521 22 1 1.5146 -0.0780 -7.4807 23 1 0.9878 2.0418 -8.5333 24 1 3.2712 1.2255 -8.5282 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 2.5457 1.3446 2.0296 31 1 3.0677 2.7951 1.1396 32 1 0.6447 3.3466 3.7819 33 1 2.3299 3.5827 3.2278 34 1 0.4380 5.6364 3.3417 35 1 1.8347 5.6380 2.2153 36 1 -1.0372 4.6915 1.6867 37 1 -0.0217 5.7742 0.6823 38 1 0.0095 2.2990 -0.8156 39 1 -1.2442 2.6378 0.4017 40 1 -1.8292 3.6509 -1.7849 41 1 -1.5570 4.9055 -0.5517 42 1 -0.3032 4.5666 -1.7689 43 1 2.6238 0.4140 -2.5278 44 1 0.9481 1.0144 -2.5322 45 1 1.7077 3.1293 -3.5794 46 1 3.3835 2.5296 -3.5755 47 1 2.9265 3.8714 -6.9744 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000558649395.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:34 Heat of formation + Delta-G solvation = -37.473919 kcal Electronic energy + Delta-G solvation = -24352.431300 eV Core-core repulsion = 21148.972194 eV Total energy + Delta-G solvation = -3203.459106 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.04702 -38.31630 -35.44145 -33.60209 -33.29853 -31.45450 -30.50585 -29.39206 -28.44876 -26.23644 -24.59882 -23.41052 -22.51210 -21.11544 -20.52573 -20.04448 -18.31035 -16.89877 -16.24566 -15.93924 -15.53071 -15.33772 -14.75825 -14.35278 -14.10834 -13.97501 -13.54158 -13.17605 -13.15360 -12.92907 -12.49516 -12.43693 -12.15704 -11.96786 -11.88092 -11.60131 -11.36173 -11.22685 -11.14261 -11.02034 -10.93418 -10.89694 -10.75687 -10.56376 -10.50931 -10.39717 -9.83062 -9.50983 -9.03377 -8.73173 -8.41716 -8.26184 -7.89298 -5.90432 -3.94148 3.35277 3.41661 3.44068 3.46739 3.55225 4.08592 4.51545 4.67129 4.70544 4.92760 5.00054 5.13715 5.25327 5.26905 5.34742 5.43006 5.44493 5.47061 5.52708 5.54099 5.67419 5.71040 5.76299 5.79733 5.80337 5.91187 5.93591 5.96303 6.06887 6.15555 6.18913 6.26888 6.34502 6.36249 6.41443 6.58229 6.94433 7.02598 7.19818 7.32550 7.81932 7.96728 8.00454 8.15636 8.46873 9.04826 9.16797 9.68953 11.20460 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021575 B = 0.004737 C = 0.004424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.479590 B = 5909.627127 C = 6327.526934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.108 3.892 3 N -0.627 5.627 4 C 0.133 3.867 5 C 0.050 3.950 6 H 0.048 0.952 7 C -0.124 4.124 8 C -0.122 4.122 9 C 0.036 3.964 10 N -0.487 5.487 11 C 0.043 3.957 12 C -0.153 4.153 13 C 0.512 3.488 14 O -0.504 6.504 15 C -0.129 4.129 16 C 0.040 3.960 17 C -0.524 4.524 18 H 0.054 0.946 19 C 0.059 3.941 20 N -0.889 5.889 21 Si 0.889 3.111 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.284 1.284 25 H 0.061 0.939 26 H 0.053 0.947 27 H 0.064 0.936 28 H 0.082 0.918 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.085 0.915 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.035 0.965 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.020 0.980 40 H 0.056 0.944 41 H 0.047 0.953 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.024 0.976 46 H 0.021 0.979 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.425 -3.752 19.444 20.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.016 4.016 3 N -0.363 5.363 4 C 0.010 3.990 5 C -0.060 4.060 6 H 0.066 0.934 7 C -0.163 4.163 8 C -0.160 4.160 9 C -0.092 4.092 10 N -0.211 5.211 11 C -0.085 4.085 12 C -0.210 4.210 13 C 0.301 3.699 14 O -0.376 6.376 15 C -0.169 4.169 16 C 0.002 3.998 17 C -0.562 4.562 18 H 0.072 0.928 19 C -0.143 4.143 20 N -0.528 5.528 21 Si 0.717 3.283 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.211 1.211 25 H 0.080 0.920 26 H 0.072 0.928 27 H 0.083 0.917 28 H 0.100 0.900 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.104 0.896 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.054 0.946 37 H 0.099 0.901 38 H 0.106 0.894 39 H 0.039 0.961 40 H 0.075 0.925 41 H 0.066 0.934 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.042 0.958 46 H 0.040 0.960 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.701 -2.829 18.940 19.981 hybrid contribution -1.058 -0.846 -0.392 1.410 sum -6.759 -3.675 18.548 20.081 Atomic orbital electron populations 1.22437 0.96774 1.01841 1.02395 1.21463 0.94008 0.83316 1.02811 1.48128 1.68437 1.13679 1.06059 1.21397 0.96821 0.95702 0.85120 1.22886 0.97826 0.94479 0.90834 0.93368 1.22388 1.01997 0.95316 0.96561 1.22450 1.00020 0.96372 0.97143 1.23201 0.95598 0.95388 0.95035 1.64733 1.34531 1.05195 1.16640 1.22533 0.92469 0.97872 0.95630 1.21846 1.00996 0.98714 0.99492 1.21257 0.76635 0.86931 0.85092 1.90680 1.42842 1.17317 1.86777 1.21908 1.01589 1.00711 0.92718 1.18866 0.97846 0.93779 0.89287 1.21273 1.44376 0.99445 0.91125 0.92754 1.25007 0.95372 0.94844 0.99070 1.70012 1.45409 1.11065 1.26302 0.86593 0.77828 0.79770 0.84113 1.19794 1.21086 1.21063 0.91991 0.92824 0.91711 0.89989 0.91276 0.91480 0.89636 0.91846 0.90884 0.91573 0.90573 0.94644 0.90109 0.89379 0.96140 0.92462 0.93371 0.90930 0.90865 0.90943 0.95808 0.96023 0.93108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.88 8.90 37.16 0.33 -1.55 16 2 C 0.11 1.24 5.98 -4.04 -0.02 1.22 16 3 N -0.63 -9.30 1.75 -173.69 -0.30 -9.61 16 4 C 0.13 1.76 5.02 -4.04 -0.02 1.74 16 5 C 0.05 0.62 2.82 -66.64 -0.19 0.43 16 6 H 0.05 0.57 5.93 -51.93 -0.31 0.27 16 7 C -0.12 -1.26 6.57 -25.38 -0.17 -1.42 16 8 C -0.12 -1.31 7.06 -24.87 -0.18 -1.49 16 9 C 0.04 0.45 5.10 -1.90 -0.01 0.44 16 10 N -0.49 -7.27 3.73 -222.58 -0.83 -8.10 16 11 C 0.04 0.64 4.20 -3.82 -0.02 0.63 16 12 C -0.15 -2.35 9.57 37.16 0.36 -1.99 16 13 C 0.51 10.06 4.97 -10.99 -0.05 10.00 16 14 O -0.50 -11.95 14.72 5.55 0.08 -11.87 16 15 C -0.13 -2.71 4.13 -27.88 -0.12 -2.82 16 16 C 0.04 1.08 4.26 -27.88 -0.12 0.97 16 17 C -0.52 -15.00 9.11 -34.44 -0.31 -15.31 16 18 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 19 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 20 N -0.89 -27.66 13.29 55.43 0.74 -26.92 16 21 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 22 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 24 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.56 6.07 -51.93 -0.32 0.25 16 27 H 0.06 0.82 5.63 -51.93 -0.29 0.52 16 28 H 0.08 0.97 6.43 -51.93 -0.33 0.64 16 29 H 0.07 0.63 7.89 -51.93 -0.41 0.22 16 30 H 0.07 0.69 7.89 -51.93 -0.41 0.28 16 31 H 0.09 1.34 7.42 -51.93 -0.39 0.95 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.69 7.69 -51.93 -0.40 0.29 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.04 0.42 8.00 -51.92 -0.42 0.00 16 37 H 0.08 1.09 7.67 -51.93 -0.40 0.69 16 38 H 0.09 1.46 2.68 -51.93 -0.14 1.32 16 39 H 0.02 0.28 7.66 -51.93 -0.40 -0.12 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.05 0.64 6.79 -51.92 -0.35 0.29 16 42 H 0.07 1.34 8.14 -51.92 -0.42 0.92 16 43 H 0.07 1.43 7.39 -51.93 -0.38 1.05 16 44 H 0.07 1.41 7.03 -51.93 -0.37 1.05 16 45 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 46 H 0.02 0.65 8.10 -51.94 -0.42 0.23 16 47 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 350.77 15.07 5.29 5.29 Total: -1.00 -33.49 350.77 -8.89 -42.38 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -8.22 Total: -0.45 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: -0.61 Total: -7.55 kcal Atomic # 7 Polarization: -44.24 SS G_CDS: -0.40 Total: -44.63 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: 0.08 Total: -11.87 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.49 -8.89 -42.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000558649395.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.906 kcal (2) G-P(sol) polarization free energy of solvation -33.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds