Wall clock time and date at job start Tue Mar 31 2020 06:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46496 * 109.46877 * 2 1 4 4 C 1.34774 * 120.00066 * 89.99760 * 3 2 1 5 5 O 1.21586 * 120.00028 * 40.43142 * 4 3 2 6 6 N 1.34779 * 120.00611 * 220.42840 * 4 3 2 7 7 C 1.46922 * 120.63251 * 142.51298 * 6 4 3 8 8 C 1.53193 * 108.89353 * 126.34761 * 7 6 4 9 9 C 1.53353 * 109.14834 * 54.57451 * 8 7 6 10 10 C 1.52995 * 109.41433 * 178.67588 * 9 8 7 11 11 C 1.50699 * 109.47231 * 295.12659 * 10 9 8 12 12 H 1.07998 * 120.00127 * 0.02562 * 11 10 9 13 13 C 1.37884 * 120.00083 * 179.97438 * 11 10 9 14 14 N 1.31518 * 119.99975 * 179.97438 * 13 11 10 15 15 Si 1.86796 * 119.99749 * 0.02562 * 13 11 10 16 16 H 1.48496 * 109.47328 * 89.99802 * 15 13 11 17 17 H 1.48506 * 109.46805 * 209.99679 * 15 13 11 18 18 H 1.48500 * 109.47465 * 329.99414 * 15 13 11 19 19 C 1.53039 * 109.60782 * 298.71090 * 9 8 7 20 20 C 1.46931 * 120.62470 * 322.54004 * 6 4 3 21 21 C 1.46497 * 120.00056 * 269.99868 * 3 2 1 22 22 C 1.52994 * 109.47275 * 111.68835 * 21 3 2 23 23 C 1.53001 * 109.47213 * 231.68706 * 21 3 2 24 24 H 1.08995 * 109.47684 * 299.99949 * 1 2 3 25 25 H 1.08996 * 109.47266 * 60.00322 * 1 2 3 26 26 H 1.09004 * 109.46776 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47214 * 239.99813 * 2 1 3 28 28 H 1.09004 * 109.46675 * 119.99853 * 2 1 3 29 29 H 1.09006 * 109.58134 * 246.20340 * 7 6 4 30 30 H 1.08994 * 109.58850 * 6.48146 * 7 6 4 31 31 H 1.08992 * 109.49423 * 174.65517 * 8 7 6 32 32 H 1.08994 * 109.49394 * 294.75107 * 8 7 6 33 33 H 1.08998 * 109.42249 * 58.75304 * 9 8 7 34 34 H 1.08998 * 109.47623 * 55.12952 * 10 9 8 35 35 H 1.09004 * 109.47205 * 175.12659 * 10 9 8 36 36 H 0.96994 * 120.00068 * 180.02562 * 14 13 11 37 37 H 1.08997 * 109.50018 * 301.42664 * 19 9 8 38 38 H 1.08996 * 109.52074 * 181.34204 * 19 9 8 39 39 H 1.08997 * 109.58841 * 353.36354 * 20 6 4 40 40 H 1.08996 * 109.58729 * 113.65566 * 20 6 4 41 41 H 1.08998 * 109.47391 * 351.68459 * 21 3 2 42 42 H 1.08997 * 109.47168 * 11.97710 * 22 21 3 43 43 H 1.08994 * 109.47604 * 131.97840 * 22 21 3 44 44 H 1.09004 * 109.47410 * 251.97501 * 22 21 3 45 45 H 1.09003 * 109.46995 * 102.59112 * 23 21 3 46 46 H 1.08999 * 109.47102 * 222.59241 * 23 21 3 47 47 H 1.09002 * 109.46825 * 342.59432 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2428 2.0166 1.1672 5 8 2.7566 1.4211 2.0944 6 7 1.8980 3.3120 1.3066 7 6 1.3515 3.8087 2.5768 8 6 2.1806 5.0119 3.0368 9 6 2.2180 6.0558 1.9141 10 6 3.0172 7.2746 2.3795 11 6 2.2972 7.9405 3.5237 12 1 1.3632 7.5346 3.8834 13 6 2.8314 9.0672 4.1122 14 7 2.2028 9.6486 5.1105 15 14 4.4472 9.7687 3.4906 16 1 4.1767 10.7598 2.4184 17 1 5.1616 10.4332 4.6102 18 1 5.2879 8.6708 2.9493 19 6 2.8829 5.4532 0.6744 20 6 2.0609 4.2542 0.1910 21 6 2.2624 2.0718 -1.2687 22 6 1.2376 3.1942 -1.4439 23 6 3.6727 2.6652 -1.2632 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 0.3144 4.1126 2.4343 30 1 1.4014 3.0213 3.3288 31 1 1.7274 5.4467 3.9276 32 1 3.1958 4.6878 3.2658 33 1 1.2008 6.3607 1.6687 34 1 4.0065 6.9565 2.7086 35 1 3.1182 7.9796 1.5543 36 1 2.5783 10.4414 5.5242 37 1 3.8916 5.1252 0.9257 38 1 2.9302 6.2037 -0.1146 39 1 2.5815 3.7617 -0.6302 40 1 1.0817 4.5925 -0.1476 41 1 2.1696 1.3633 -2.0918 42 1 0.7099 3.3544 -0.5037 43 1 1.7495 4.1117 -1.7341 44 1 0.5231 2.9162 -2.2188 45 1 4.3333 2.0376 -1.8615 46 1 3.6457 3.6699 -1.6849 47 1 4.0437 2.7107 -0.2393 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565477158.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:42 Heat of formation + Delta-G solvation = 78.800191 kcal Electronic energy + Delta-G solvation = -24358.828526 eV Core-core repulsion = 21160.411443 eV Total energy + Delta-G solvation = -3198.417082 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.60122 -37.73640 -37.25285 -34.55346 -33.29770 -32.05184 -30.58533 -29.90598 -28.22657 -27.72615 -24.54821 -23.83754 -22.78233 -22.09477 -21.22906 -19.49414 -18.01360 -17.35171 -16.78374 -16.44751 -15.96409 -15.53001 -14.95174 -14.30938 -14.21990 -14.02529 -13.73447 -13.45140 -13.27658 -13.02618 -12.85293 -12.67395 -12.40176 -12.18887 -12.00612 -11.82289 -11.78962 -11.45153 -11.34921 -11.12699 -11.00335 -10.71619 -10.59474 -10.28966 -10.10687 -9.84768 -9.74608 -9.58262 -9.25009 -8.96290 -8.66990 -8.50256 -8.06327 -6.01274 -3.98118 2.64758 2.87079 3.31929 3.39911 3.44090 3.72209 4.42241 4.48009 4.65196 4.78371 4.85566 5.10477 5.19643 5.22100 5.25375 5.31826 5.37385 5.38133 5.47952 5.53577 5.56430 5.62878 5.66423 5.74619 5.78624 5.86571 5.89605 5.97667 5.99938 6.03385 6.11765 6.34220 6.46335 6.48670 6.71632 6.73258 6.94067 6.95965 7.03848 7.16337 7.29246 7.50337 7.83745 7.97992 8.53554 8.57633 9.03919 9.62107 11.12148 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.029840 B = 0.004271 C = 0.004046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.119876 B = 6554.190097 C = 6919.531057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.131 3.869 3 N -0.652 5.652 4 C 0.729 3.271 5 O -0.565 6.565 6 N -0.638 5.638 7 C 0.131 3.869 8 C -0.119 4.119 9 C -0.069 4.069 10 C -0.009 4.009 11 C -0.514 4.514 12 H 0.073 0.927 13 C 0.065 3.935 14 N -0.905 5.905 15 Si 0.878 3.122 16 H -0.278 1.278 17 H -0.289 1.289 18 H -0.266 1.266 19 C -0.141 4.141 20 C 0.046 3.954 21 C 0.139 3.861 22 C -0.198 4.198 23 C -0.179 4.179 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.014 0.986 35 H 0.010 0.990 36 H 0.262 0.738 37 H 0.056 0.944 38 H 0.065 0.935 39 H 0.138 0.862 40 H 0.074 0.926 41 H 0.089 0.911 42 H 0.099 0.901 43 H 0.074 0.926 44 H 0.044 0.956 45 H 0.064 0.936 46 H 0.079 0.921 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.162 -17.150 -16.428 23.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.008 3.992 3 N -0.392 5.392 4 C 0.433 3.567 5 O -0.440 6.440 6 N -0.377 5.377 7 C 0.008 3.992 8 C -0.157 4.157 9 C -0.088 4.088 10 C -0.047 4.047 11 C -0.552 4.552 12 H 0.091 0.909 13 C -0.135 4.135 14 N -0.544 5.544 15 Si 0.706 3.294 16 H -0.204 1.204 17 H -0.215 1.215 18 H -0.191 1.191 19 C -0.180 4.180 20 C -0.074 4.074 21 C 0.034 3.966 22 C -0.255 4.255 23 C -0.237 4.237 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.098 0.902 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.104 0.896 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.032 0.968 35 H 0.028 0.972 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.155 0.845 40 H 0.092 0.908 41 H 0.108 0.892 42 H 0.118 0.882 43 H 0.093 0.907 44 H 0.062 0.938 45 H 0.083 0.917 46 H 0.097 0.903 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.849 -17.355 -15.738 23.501 hybrid contribution 0.821 0.735 -0.223 1.125 sum -1.027 -16.619 -15.961 23.065 Atomic orbital electron populations 1.22241 0.96446 1.01802 1.02341 1.21257 0.93518 0.81451 1.02960 1.47295 1.73367 1.14398 1.04157 1.15819 0.77110 0.81485 0.82235 1.90861 1.42070 1.68399 1.42684 1.47420 1.68614 1.06831 1.14820 1.21604 0.96315 0.97246 0.83997 1.21939 1.00107 0.93993 0.99661 1.21002 0.99494 0.95518 0.92743 1.19621 0.95826 0.92834 0.96389 1.21153 1.08618 1.10456 1.14962 0.90878 1.25029 0.97089 0.96689 0.94736 1.69914 1.39394 1.21066 1.24074 0.86809 0.84722 0.79443 0.78473 1.20429 1.21512 1.19105 1.22218 0.99563 0.97001 0.99173 1.24753 1.00591 0.91394 0.90684 1.21127 0.94115 0.95031 0.86290 1.24063 0.99512 0.98129 1.03807 1.22596 0.96326 1.01240 1.03493 0.92599 0.92484 0.91831 0.90982 0.90164 0.92161 0.90651 0.89628 0.92403 0.92038 0.96780 0.97218 0.92850 0.92493 0.91601 0.84505 0.90825 0.89246 0.88230 0.90735 0.93758 0.91661 0.90258 0.91371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.42 10.24 37.16 0.38 -1.04 16 2 C 0.13 1.25 6.33 -4.04 -0.03 1.23 16 3 N -0.65 -7.54 2.36 -171.81 -0.41 -7.94 16 4 C 0.73 11.25 5.75 -86.92 -0.50 10.75 16 5 O -0.57 -10.94 16.39 5.29 0.09 -10.85 16 6 N -0.64 -9.50 2.52 -182.08 -0.46 -9.95 16 7 C 0.13 2.11 6.39 -3.71 -0.02 2.09 16 8 C -0.12 -2.24 5.21 -26.45 -0.14 -2.38 16 9 C -0.07 -1.32 2.10 -90.42 -0.19 -1.51 16 10 C -0.01 -0.22 3.52 -27.89 -0.10 -0.32 16 11 C -0.51 -14.39 8.94 -34.44 -0.31 -14.70 16 12 H 0.07 2.18 7.30 -52.49 -0.38 1.80 16 13 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 14 N -0.91 -27.94 13.96 55.43 0.77 -27.17 16 15 Si 0.88 21.93 27.47 -169.99 -4.67 17.26 16 16 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 17 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 18 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 19 C -0.14 -2.19 5.36 -26.61 -0.14 -2.33 16 20 C 0.05 0.59 2.59 -3.71 -0.01 0.58 16 21 C 0.14 1.23 3.28 -67.93 -0.22 1.01 16 22 C -0.20 -1.68 7.40 37.15 0.28 -1.40 16 23 C -0.18 -1.64 8.39 37.16 0.31 -1.33 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.52 7.86 -51.93 -0.41 0.11 16 28 H 0.08 0.90 7.48 -51.93 -0.39 0.51 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.08 1.25 7.44 -51.93 -0.39 0.87 16 31 H 0.09 1.78 6.93 -51.93 -0.36 1.42 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.01 0.34 7.20 -51.93 -0.37 -0.03 16 35 H 0.01 0.22 7.57 -51.93 -0.39 -0.17 16 36 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 37 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.14 1.46 0.29 -112.24 -0.03 1.43 16 40 H 0.07 0.87 5.62 -51.93 -0.29 0.58 16 41 H 0.09 0.61 7.76 -51.93 -0.40 0.21 16 42 H 0.10 1.06 4.30 -56.53 -0.24 0.81 16 43 H 0.07 0.58 5.42 -51.93 -0.28 0.30 16 44 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.08 0.63 6.50 -51.93 -0.34 0.29 16 47 H 0.07 0.85 6.27 -51.93 -0.33 0.52 16 LS Contribution 342.09 15.07 5.16 5.16 Total: -1.00 -32.98 342.09 -8.31 -41.28 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -8.00 Total: -0.20 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: -0.79 Total: -7.57 kcal Atomic # 7 Polarization: -44.98 SS G_CDS: -0.09 Total: -45.07 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.09 Total: -10.85 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.67 Total: 17.26 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.98 -8.31 -41.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565477158.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.084 kcal (2) G-P(sol) polarization free energy of solvation -32.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds