Wall clock time and date at job start Tue Mar 31 2020 05:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47535 * 2 1 4 4 C 1.53005 * 109.47306 * 119.99874 * 2 1 3 5 5 N 1.46893 * 109.47038 * 297.22885 * 4 2 1 6 6 C 1.47013 * 110.99937 * 288.16629 * 5 4 2 7 7 C 1.53098 * 109.26049 * 177.60903 * 6 5 4 8 8 O 1.43017 * 109.25988 * 56.84504 * 7 6 5 9 9 C 1.43016 * 113.73702 * 301.33438 * 8 7 6 10 10 C 1.47019 * 111.00397 * 164.53075 * 5 4 2 11 11 N 1.46900 * 109.47161 * 239.99640 * 2 1 3 12 12 C 1.46848 * 111.00043 * 180.60885 * 11 2 1 13 13 C 1.53039 * 109.52316 * 174.16424 * 12 11 2 14 14 C 1.53118 * 109.28235 * 59.17835 * 13 12 11 15 15 C 1.50693 * 109.52587 * 182.43947 * 14 13 12 16 16 H 1.08006 * 120.00004 * 119.68202 * 15 14 13 17 17 C 1.37879 * 120.00213 * 299.68507 * 15 14 13 18 18 N 1.31516 * 119.99976 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00157 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.46912 * 89.99863 * 19 17 15 21 21 H 1.48499 * 109.47202 * 210.00036 * 19 17 15 22 22 H 1.48506 * 109.47040 * 330.00398 * 19 17 15 23 23 C 1.53114 * 109.15937 * 302.35116 * 14 13 12 24 24 C 1.46846 * 111.00103 * 56.40100 * 11 2 1 25 25 H 1.08997 * 109.47171 * 300.00193 * 1 2 3 26 26 H 1.09004 * 109.46895 * 60.00070 * 1 2 3 27 27 H 1.09003 * 109.47069 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46690 * 57.22478 * 4 2 1 29 29 H 1.08999 * 109.47096 * 177.22253 * 4 2 1 30 30 H 1.09006 * 109.50583 * 297.54228 * 6 5 4 31 31 H 1.08995 * 109.50787 * 57.66961 * 6 5 4 32 32 H 1.09006 * 109.50621 * 296.91355 * 7 6 5 33 33 H 1.08998 * 109.54724 * 176.80493 * 7 6 5 34 34 H 1.09003 * 109.50248 * 298.73013 * 9 8 7 35 35 H 1.09002 * 109.53744 * 178.62650 * 9 8 7 36 36 H 1.08999 * 109.50149 * 302.32415 * 10 5 4 37 37 H 1.09003 * 109.50125 * 62.41236 * 10 5 4 38 38 H 1.08996 * 109.46303 * 294.17752 * 12 11 2 39 39 H 1.09005 * 109.46342 * 54.14908 * 12 11 2 40 40 H 1.09006 * 109.50242 * 299.23420 * 13 12 11 41 41 H 1.09004 * 109.50661 * 179.12688 * 13 12 11 42 42 H 1.09007 * 109.51734 * 62.25045 * 14 13 12 43 43 H 0.96995 * 119.99845 * 179.97438 * 18 17 15 44 44 H 1.09009 * 109.50216 * 297.70559 * 23 14 13 45 45 H 1.09001 * 109.50480 * 177.59453 * 23 14 13 46 46 H 1.09000 * 109.45877 * 305.85791 * 24 11 2 47 47 H 1.09008 * 109.46441 * 65.82222 * 24 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6058 0.0088 2.4477 6 6 2.3473 1.2698 2.5939 7 6 1.8233 2.0248 3.8184 8 8 1.9416 1.1900 4.9736 9 6 1.2310 -0.0464 4.8656 10 6 1.7491 -0.8224 3.6519 11 7 2.0196 -0.6926 -1.1994 12 6 3.4875 -0.7248 -1.2261 13 6 3.9590 -1.5758 -2.4074 14 6 3.4193 -0.9770 -3.7092 15 6 3.8303 -1.8444 -4.8709 16 1 3.0778 -2.3027 -5.4955 17 6 5.1671 -2.0530 -5.1366 18 7 6.0836 -1.4953 -4.3757 19 14 5.6766 -3.1287 -6.5762 20 1 5.8207 -2.2906 -7.7937 21 1 6.9735 -3.7840 -6.2700 22 1 4.6404 -4.1666 -6.8096 23 6 1.8914 -0.9099 -3.6360 24 6 1.4798 -0.0783 -2.4191 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.6366 -1.7336 1.2745 29 1 3.1289 -0.7645 1.2247 30 1 3.4080 1.0553 2.7251 31 1 2.2065 1.8804 1.7021 32 1 0.7764 2.2864 3.6641 33 1 2.4077 2.9332 3.9644 34 1 0.1669 0.1550 4.7418 35 1 1.3871 -0.6366 5.7686 36 1 1.1715 -1.7389 3.5322 37 1 2.8001 -1.0710 3.7995 38 1 3.8712 0.2898 -1.3334 39 1 3.8583 -1.1567 -0.2964 40 1 3.5872 -2.5942 -2.2936 41 1 5.0486 -1.5868 -2.4361 42 1 3.8221 0.0271 -3.8426 43 1 7.0240 -1.6424 -4.5624 44 1 1.4870 -1.9178 -3.5416 45 1 1.5037 -0.4451 -4.5424 46 1 0.3923 -0.0405 -2.3559 47 1 1.8729 0.9334 -2.5209 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566934870.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:53 Heat of formation + Delta-G solvation = -40.852813 kcal Electronic energy + Delta-G solvation = -23493.221012 eV Core-core repulsion = 20289.615386 eV Total energy + Delta-G solvation = -3203.605626 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.87007 -38.54204 -36.16159 -34.15470 -32.01456 -31.36169 -30.19552 -29.46807 -27.72923 -25.63772 -24.56499 -24.21496 -22.09591 -21.67226 -20.65659 -19.60969 -18.61075 -16.94414 -16.36773 -16.30974 -15.56862 -15.33004 -15.21402 -14.90309 -14.47054 -14.18966 -13.78217 -13.54441 -13.19892 -12.79369 -12.62188 -12.51665 -12.39367 -12.13518 -11.71657 -11.63543 -11.58695 -11.30984 -10.94969 -10.85937 -10.80190 -10.64997 -10.54743 -10.36488 -10.18063 -9.94949 -9.82695 -9.39901 -8.89701 -8.72628 -8.43691 -8.27189 -7.70267 -5.95759 -4.00887 3.31972 3.38715 3.42415 3.51596 3.69217 4.45989 4.50650 4.68122 4.80990 4.83095 4.94534 5.04036 5.16828 5.20715 5.32120 5.34627 5.40927 5.53190 5.60180 5.65948 5.73130 5.73347 5.80909 5.90068 5.91897 6.06925 6.15269 6.19959 6.22530 6.37279 6.50007 6.63056 6.66681 6.81392 6.83123 6.89504 6.93292 7.11511 7.19810 7.47006 7.65307 7.74179 7.86085 8.07175 8.17748 8.50513 9.02906 9.63388 11.10397 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.033249 B = 0.003401 C = 0.003254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.924447 B = 8231.303426 C = 8601.988092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.086 3.914 3 H 0.031 0.969 4 C 0.061 3.939 5 N -0.533 5.533 6 C 0.014 3.986 7 C 0.065 3.935 8 O -0.388 6.388 9 C 0.065 3.935 10 C 0.018 3.982 11 N -0.531 5.531 12 C 0.054 3.946 13 C -0.103 4.103 14 C 0.048 3.952 15 C -0.509 4.509 16 H 0.054 0.946 17 C 0.060 3.940 18 N -0.893 5.893 19 Si 0.889 3.111 20 H -0.282 1.282 21 H -0.287 1.287 22 H -0.275 1.275 23 C -0.106 4.106 24 C 0.059 3.941 25 H 0.063 0.937 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.083 0.917 29 H 0.042 0.958 30 H 0.042 0.958 31 H 0.087 0.913 32 H 0.059 0.941 33 H 0.096 0.904 34 H 0.059 0.941 35 H 0.096 0.904 36 H 0.086 0.914 37 H 0.042 0.958 38 H 0.019 0.981 39 H 0.055 0.945 40 H 0.043 0.957 41 H 0.091 0.909 42 H 0.019 0.981 43 H 0.259 0.741 44 H 0.056 0.944 45 H 0.049 0.951 46 H 0.063 0.937 47 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.601 4.673 16.167 19.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.023 4.023 3 H 0.049 0.951 4 C -0.066 4.066 5 N -0.259 5.259 6 C -0.114 4.114 7 C -0.012 4.012 8 O -0.307 6.307 9 C -0.012 4.012 10 C -0.110 4.110 11 N -0.257 5.257 12 C -0.073 4.073 13 C -0.141 4.141 14 C 0.030 3.970 15 C -0.548 4.548 16 H 0.072 0.928 17 C -0.141 4.141 18 N -0.532 5.532 19 Si 0.718 3.282 20 H -0.208 1.208 21 H -0.213 1.213 22 H -0.199 1.199 23 C -0.144 4.144 24 C -0.068 4.068 25 H 0.082 0.918 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.101 0.899 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.105 0.895 32 H 0.077 0.923 33 H 0.114 0.886 34 H 0.077 0.923 35 H 0.114 0.886 36 H 0.105 0.895 37 H 0.060 0.940 38 H 0.038 0.962 39 H 0.074 0.926 40 H 0.061 0.939 41 H 0.109 0.891 42 H 0.037 0.963 43 H 0.068 0.932 44 H 0.075 0.925 45 H 0.067 0.933 46 H 0.082 0.918 47 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -9.959 4.361 16.308 19.600 hybrid contribution 1.479 -0.035 -1.039 1.808 sum -8.480 4.326 15.269 17.993 Atomic orbital electron populations 1.21770 0.94171 1.02131 1.01113 1.21479 0.95959 0.94894 0.89944 0.95138 1.22218 0.98257 0.97763 0.88371 1.62126 1.56238 1.04959 1.02576 1.22840 0.96345 0.92614 0.99604 1.22659 1.01118 0.93002 0.84396 1.87972 1.73330 1.30335 1.39039 1.22654 0.95986 0.85105 0.97473 1.22770 1.00495 0.97077 0.90667 1.61984 1.09525 1.53194 1.00973 1.22332 0.85862 0.98876 1.00216 1.21650 1.02894 0.96938 0.92636 1.18675 0.88864 0.96287 0.93220 1.21220 0.91609 1.29699 1.12227 0.92769 1.24972 0.96776 0.95916 0.96389 1.69878 1.00404 1.44495 1.38429 0.86638 0.77923 0.80783 0.82900 1.20825 1.21318 1.19944 1.21676 0.99998 0.98759 0.93950 1.22166 0.98368 0.95758 0.90515 0.91829 0.93129 0.92352 0.89902 0.94026 0.93939 0.89467 0.92304 0.88605 0.92305 0.88621 0.89526 0.93995 0.96236 0.92641 0.93865 0.89096 0.96274 0.93152 0.92507 0.93277 0.91831 0.96103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.73 8.73 37.16 0.32 -1.40 16 2 C 0.09 1.25 2.14 -67.71 -0.14 1.10 16 3 H 0.03 0.46 6.62 -51.93 -0.34 0.12 16 4 C 0.06 0.81 4.23 -3.83 -0.02 0.80 16 5 N -0.53 -6.08 4.04 -234.31 -0.95 -7.03 16 6 C 0.01 0.16 5.47 -3.71 -0.02 0.14 16 7 C 0.07 0.63 7.01 37.21 0.26 0.89 16 8 O -0.39 -4.31 10.83 -35.23 -0.38 -4.69 16 9 C 0.06 0.59 7.01 37.20 0.26 0.85 16 10 C 0.02 0.18 5.62 -3.71 -0.02 0.16 16 11 N -0.53 -9.37 4.53 -226.69 -1.03 -10.40 16 12 C 0.05 1.07 5.21 -3.83 -0.02 1.05 16 13 C -0.10 -2.44 5.12 -26.65 -0.14 -2.58 16 14 C 0.05 1.20 2.16 -91.66 -0.20 1.00 16 15 C -0.51 -14.08 8.56 -34.44 -0.29 -14.37 16 16 H 0.05 1.49 7.75 -52.48 -0.41 1.08 16 17 C 0.06 1.67 5.31 -17.82 -0.09 1.58 16 18 N -0.89 -25.56 11.37 55.43 0.63 -24.93 16 19 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 23 C -0.11 -2.24 5.32 -26.66 -0.14 -2.38 16 24 C 0.06 1.08 5.15 -3.84 -0.02 1.06 16 25 H 0.06 0.76 7.68 -51.93 -0.40 0.36 16 26 H 0.05 0.65 6.22 -51.93 -0.32 0.32 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.08 1.12 7.94 -51.93 -0.41 0.71 16 29 H 0.04 0.60 6.04 -51.93 -0.31 0.29 16 30 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.09 0.95 6.57 -51.93 -0.34 0.61 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.09 0.77 8.04 -51.93 -0.42 0.36 16 37 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.06 1.01 5.93 -51.93 -0.31 0.70 16 40 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.09 2.40 6.17 -51.93 -0.32 2.08 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.26 7.08 8.31 -40.82 -0.34 6.75 16 44 H 0.06 1.23 8.14 -51.92 -0.42 0.80 16 45 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.06 1.02 5.91 -51.93 -0.31 0.71 16 47 H 0.02 0.39 8.14 -51.92 -0.42 -0.04 16 LS Contribution 347.68 15.07 5.24 5.24 Total: -1.00 -28.78 347.68 -10.29 -39.08 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -8.52 Total: -1.54 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: -0.26 Total: -12.12 kcal Atomic # 7 Polarization: -41.01 SS G_CDS: -1.34 Total: -42.35 kcal Atomic # 8 Polarization: -4.31 SS G_CDS: -0.38 Total: -4.69 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -28.78 -10.29 -39.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566934870.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.778 kcal (2) G-P(sol) polarization free energy of solvation -28.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds