Wall clock time and date at job start Tue Mar 31 2020 05:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47100 * 2 1 4 4 C 1.52995 * 109.47070 * 119.99694 * 2 1 3 5 5 C 1.50701 * 109.47049 * 62.83359 * 4 2 1 6 6 H 1.08001 * 120.00183 * 5.12309 * 5 4 2 7 7 C 1.37878 * 120.00132 * 185.12827 * 5 4 2 8 8 N 1.31514 * 120.00143 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00069 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46652 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47165 * 119.99731 * 9 7 5 12 12 H 1.48497 * 109.47232 * 239.99709 * 9 7 5 13 13 N 1.46903 * 109.47449 * 240.00054 * 2 1 3 14 14 C 1.46840 * 110.99898 * 186.28514 * 13 2 1 15 15 C 1.53037 * 109.52011 * 174.16134 * 14 13 2 16 16 C 1.53122 * 109.31262 * 59.15397 * 15 14 13 17 17 C 1.53116 * 109.15928 * 302.40612 * 16 15 14 18 18 H 1.09000 * 109.49868 * 297.63295 * 17 16 15 19 19 N 1.46894 * 109.50296 * 177.55513 * 17 16 15 20 20 C 1.47014 * 111.00350 * 183.71211 * 19 17 16 21 21 C 1.53092 * 109.26267 * 177.61004 * 20 19 17 22 22 O 1.43014 * 109.25993 * 56.84754 * 21 20 19 23 23 C 1.43010 * 113.73745 * 301.33390 * 22 21 20 24 24 C 1.47020 * 111.00215 * 60.07963 * 19 17 16 25 25 C 1.46848 * 110.99885 * 62.07026 * 13 2 1 26 26 H 1.09000 * 109.47092 * 300.00251 * 1 2 3 27 27 H 1.09005 * 109.47179 * 60.00074 * 1 2 3 28 28 H 1.08997 * 109.47100 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47283 * 182.83218 * 4 2 1 30 30 H 1.09003 * 109.47620 * 302.83344 * 4 2 1 31 31 H 0.96996 * 120.00388 * 180.02562 * 8 7 5 32 32 H 1.09005 * 109.46178 * 294.17229 * 14 13 2 33 33 H 1.08999 * 109.46710 * 54.15089 * 14 13 2 34 34 H 1.09007 * 109.50420 * 179.11911 * 15 14 13 35 35 H 1.09001 * 109.50353 * 299.19373 * 15 14 13 36 36 H 1.08999 * 109.55243 * 182.47754 * 16 15 14 37 37 H 1.08998 * 109.48810 * 62.29378 * 16 15 14 38 38 H 1.09000 * 109.50384 * 297.54923 * 20 19 17 39 39 H 1.08997 * 109.50523 * 57.66970 * 20 19 17 40 40 H 1.09008 * 109.50303 * 296.91424 * 21 20 19 41 41 H 1.09000 * 109.54631 * 176.81209 * 21 20 19 42 42 H 1.09001 * 109.50812 * 298.72921 * 23 22 21 43 43 H 1.09006 * 109.53846 * 178.62812 * 23 22 21 44 44 H 1.09004 * 109.50266 * 302.32570 * 24 19 17 45 45 H 1.08997 * 109.50501 * 62.45370 * 24 19 17 46 46 H 1.09001 * 109.46284 * 65.82894 * 25 13 2 47 47 H 1.08999 * 109.45333 * 305.85239 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 1.5957 -2.1608 1.2147 6 1 1.0802 -2.5462 0.3475 7 6 1.8474 -2.9860 2.2903 8 7 2.4755 -2.5168 3.3462 9 14 1.2962 -4.7703 2.2477 10 1 0.6160 -5.0475 0.9571 11 1 2.4792 -5.6573 2.3848 12 1 0.3546 -5.0244 3.3675 13 7 2.0197 -0.6925 -1.1994 14 6 3.4798 -0.8434 -1.1606 15 6 3.9379 -1.6928 -2.3483 16 6 3.5107 -1.0127 -3.6520 17 6 1.9914 -0.8229 -3.6453 18 1 1.5032 -1.7966 -3.6049 19 7 1.5798 -0.1183 -4.8668 20 6 0.1363 0.1598 -4.8537 21 6 -0.2382 0.9453 -6.1133 22 8 0.1594 0.2018 -7.2685 23 6 1.5595 -0.0862 -7.3139 24 6 1.9522 -0.8821 -6.0666 25 6 1.5898 0.0014 -2.4201 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.1287 -0.6774 1.2750 30 1 1.6357 -0.2375 2.1386 31 1 2.6529 -3.0974 4.1027 32 1 3.9481 0.1395 -1.2150 33 1 3.7698 -1.3328 -0.2309 34 1 5.0233 -1.7916 -2.3280 35 1 3.4814 -2.6807 -2.2867 36 1 3.7963 -1.6362 -4.4993 37 1 3.9989 -0.0415 -3.7324 38 1 -0.4153 -0.7801 -4.8334 39 1 -0.1130 0.7479 -3.9705 40 1 0.2723 1.9084 -6.1068 41 1 -1.3162 1.1050 -6.1364 42 1 2.1223 0.8469 -7.3425 43 1 1.7822 -0.6729 -8.2052 44 1 3.0285 -1.0546 -6.0687 45 1 1.4297 -1.8387 -6.0657 46 1 2.0669 0.9803 -2.4687 47 1 0.5070 0.1255 -2.4049 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568410097.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:04 Heat of formation + Delta-G solvation = -37.061862 kcal Electronic energy + Delta-G solvation = -23977.510031 eV Core-core repulsion = 20774.068793 eV Total energy + Delta-G solvation = -3203.441238 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.04649 -38.52144 -36.04516 -33.93296 -32.38898 -31.43495 -30.04399 -29.64339 -27.15435 -26.00338 -24.89860 -23.58807 -22.63274 -21.77586 -20.50514 -19.49124 -18.99920 -16.95798 -16.23726 -16.14841 -15.52901 -15.14413 -15.04005 -14.80026 -14.41608 -14.18531 -14.09478 -13.58133 -13.17757 -12.99406 -12.90365 -12.57251 -12.14613 -12.07438 -11.73668 -11.52143 -11.30614 -11.10464 -10.99510 -10.92516 -10.79224 -10.63369 -10.51855 -10.47245 -10.26427 -9.88103 -9.77765 -9.65119 -9.10941 -8.94812 -8.41767 -8.26866 -7.46053 -5.90075 -3.87471 3.36331 3.44471 3.49739 3.57143 3.75086 4.53986 4.59685 4.75234 4.81475 4.87755 5.00345 5.09203 5.17917 5.22660 5.36264 5.38904 5.46762 5.47595 5.57636 5.62977 5.68260 5.75224 5.82121 5.87461 5.96042 6.01264 6.02263 6.15167 6.20844 6.24855 6.29272 6.33290 6.56724 6.68452 6.79248 6.89538 6.92385 6.99419 7.01721 7.15559 7.56558 7.68317 7.94752 8.00431 8.12990 8.58406 9.21156 9.74771 11.22053 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023968 B = 0.004222 C = 0.004141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.930954 B = 6629.636662 C = 6759.657918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.091 3.909 3 H 0.010 0.990 4 C 0.023 3.977 5 C -0.485 4.485 6 H 0.067 0.933 7 C 0.050 3.950 8 N -0.904 5.904 9 Si 0.886 3.114 10 H -0.273 1.273 11 H -0.288 1.288 12 H -0.288 1.288 13 N -0.512 5.512 14 C 0.057 3.943 15 C -0.114 4.114 16 C -0.109 4.109 17 C 0.090 3.910 18 H 0.051 0.949 19 N -0.534 5.534 20 C 0.014 3.986 21 C 0.065 3.935 22 O -0.389 6.389 23 C 0.065 3.935 24 C 0.016 3.984 25 C 0.059 3.941 26 H 0.049 0.951 27 H 0.029 0.971 28 H 0.072 0.928 29 H 0.014 0.986 30 H 0.023 0.977 31 H 0.256 0.744 32 H 0.016 0.984 33 H 0.100 0.900 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.056 0.944 37 H 0.063 0.937 38 H 0.043 0.957 39 H 0.090 0.910 40 H 0.058 0.942 41 H 0.096 0.904 42 H 0.058 0.942 43 H 0.095 0.905 44 H 0.088 0.912 45 H 0.041 0.959 46 H 0.029 0.971 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.792 6.101 -18.204 19.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.017 4.017 3 H 0.028 0.972 4 C -0.014 4.014 5 C -0.523 4.523 6 H 0.085 0.915 7 C -0.150 4.150 8 N -0.545 5.545 9 Si 0.715 3.285 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.214 1.214 13 N -0.238 5.238 14 C -0.071 4.071 15 C -0.152 4.152 16 C -0.147 4.147 17 C -0.018 4.018 18 H 0.069 0.931 19 N -0.260 5.260 20 C -0.114 4.114 21 C -0.012 4.012 22 O -0.307 6.307 23 C -0.012 4.012 24 C -0.113 4.113 25 C -0.070 4.070 26 H 0.068 0.932 27 H 0.048 0.952 28 H 0.091 0.909 29 H 0.032 0.968 30 H 0.041 0.959 31 H 0.066 0.934 32 H 0.035 0.965 33 H 0.118 0.882 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.062 0.938 39 H 0.108 0.892 40 H 0.076 0.924 41 H 0.114 0.886 42 H 0.076 0.924 43 H 0.113 0.887 44 H 0.106 0.894 45 H 0.060 0.940 46 H 0.047 0.953 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.830 5.973 -18.191 19.164 hybrid contribution -0.098 -0.925 0.420 1.020 sum -0.928 5.048 -17.771 18.497 Atomic orbital electron populations 1.21764 0.95491 1.02682 0.98899 1.21723 0.94974 0.93361 0.91615 0.97196 1.19292 0.95948 0.95868 0.90262 1.21221 1.35448 0.94484 1.01175 0.91454 1.25028 0.95882 0.98242 0.95801 1.69973 1.42741 1.35576 1.06221 0.86619 0.78236 0.85857 0.77776 1.19794 1.21397 1.21442 1.61779 1.11150 1.50216 1.00614 1.22112 0.87636 0.97447 0.99900 1.21564 0.99872 1.00143 0.93650 1.21649 0.94439 1.00729 0.97923 1.21644 0.96027 0.95842 0.88283 0.93122 1.62235 1.14838 1.46742 1.02140 1.22828 0.88693 1.00379 0.99541 1.22673 1.00247 0.94159 0.84131 1.87962 1.24241 1.75157 1.43360 1.22651 0.82128 0.99247 0.97185 1.22802 1.01960 0.95728 0.90760 1.22121 1.00279 0.94744 0.89810 0.93166 0.95171 0.90929 0.96772 0.95884 0.93409 0.96535 0.88211 0.91877 0.91061 0.92528 0.91794 0.93834 0.89155 0.92393 0.88592 0.92416 0.88713 0.89356 0.94032 0.95308 0.90939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.46 8.82 37.16 0.33 -2.14 16 2 C 0.09 1.86 2.34 -67.72 -0.16 1.70 16 3 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 4 C 0.02 0.58 4.19 -27.88 -0.12 0.46 16 5 C -0.48 -13.08 7.63 -34.44 -0.26 -13.34 16 6 H 0.07 1.84 6.86 -52.49 -0.36 1.48 16 7 C 0.05 1.40 5.46 -17.82 -0.10 1.30 16 8 N -0.90 -26.83 13.29 55.43 0.74 -26.10 16 9 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 10 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 13 N -0.51 -9.68 3.85 -226.70 -0.87 -10.55 16 14 C 0.06 1.03 5.03 -3.84 -0.02 1.02 16 15 C -0.11 -1.74 6.09 -26.65 -0.16 -1.90 16 16 C -0.11 -1.46 4.98 -26.61 -0.13 -1.59 16 17 C 0.09 1.27 2.10 -67.64 -0.14 1.13 16 18 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 19 N -0.53 -6.61 4.60 -226.25 -1.04 -7.65 16 20 C 0.01 0.16 5.25 -3.71 -0.02 0.14 16 21 C 0.06 0.66 7.01 37.21 0.26 0.92 16 22 O -0.39 -4.53 10.83 -35.23 -0.38 -4.91 16 23 C 0.06 0.63 7.01 37.20 0.26 0.89 16 24 C 0.02 0.17 5.34 -3.71 -0.02 0.15 16 25 C 0.06 0.94 4.17 -3.84 -0.02 0.92 16 26 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.03 0.48 6.33 -51.93 -0.33 0.15 16 28 H 0.07 1.50 6.91 -51.93 -0.36 1.14 16 29 H 0.01 0.37 6.37 -51.93 -0.33 0.04 16 30 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 32 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.10 2.13 5.74 -51.93 -0.30 1.83 16 34 H 0.06 0.86 8.14 -51.92 -0.42 0.43 16 35 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.06 0.67 6.50 -51.93 -0.34 0.33 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.09 1.03 6.13 -51.93 -0.32 0.71 16 40 H 0.06 0.57 8.14 -51.92 -0.42 0.14 16 41 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.09 0.87 6.25 -51.93 -0.32 0.54 16 45 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.07 1.12 4.28 -51.93 -0.22 0.90 16 LS Contribution 344.63 15.07 5.19 5.19 Total: -1.00 -29.51 344.63 -10.04 -39.55 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -8.36 Total: -1.96 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: -0.30 Total: -10.34 kcal Atomic # 7 Polarization: -43.12 SS G_CDS: -1.18 Total: -44.30 kcal Atomic # 8 Polarization: -4.53 SS G_CDS: -0.38 Total: -4.91 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.51 -10.04 -39.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568410097.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.490 kcal (2) G-P(sol) polarization free energy of solvation -29.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds