Wall clock time and date at job start Tue Mar 31 2020 05:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.46921 * 2 1 4 4 C 1.52994 * 109.47449 * 240.00111 * 2 1 3 5 5 C 1.50700 * 109.47171 * 176.83427 * 4 2 1 6 6 H 1.07998 * 120.00256 * 354.99604 * 5 4 2 7 7 C 1.37878 * 120.00229 * 175.00447 * 5 4 2 8 8 N 1.31517 * 119.99754 * 359.72078 * 7 5 4 9 9 Si 1.86798 * 120.00279 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47106 * 89.99763 * 9 7 5 11 11 H 1.48498 * 109.47435 * 209.99441 * 9 7 5 12 12 H 1.48498 * 109.47044 * 329.99785 * 9 7 5 13 13 N 1.46904 * 109.47218 * 119.99559 * 2 1 3 14 14 C 1.46849 * 110.99709 * 58.66118 * 13 2 1 15 15 C 1.53037 * 109.51983 * 174.16035 * 14 13 2 16 16 C 1.53113 * 109.28067 * 59.18348 * 15 14 13 17 17 C 1.53122 * 109.15825 * 302.34259 * 16 15 14 18 18 H 1.09003 * 109.50465 * 297.67653 * 17 16 15 19 19 N 1.46901 * 109.50692 * 177.59687 * 17 16 15 20 20 C 1.47007 * 111.00220 * 183.63112 * 19 17 16 21 21 C 1.53095 * 109.25803 * 177.60375 * 20 19 17 22 22 O 1.43018 * 109.25514 * 56.85253 * 21 20 19 23 23 C 1.43007 * 113.74199 * 301.32815 * 22 21 20 24 24 C 1.47018 * 110.99809 * 59.99813 * 19 17 16 25 25 C 1.46841 * 111.00065 * 294.45153 * 13 2 1 26 26 H 1.09005 * 109.47242 * 60.00524 * 1 2 3 27 27 H 1.09008 * 109.46694 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47679 * 299.99796 * 1 2 3 29 29 H 1.08994 * 109.47621 * 56.83339 * 4 2 1 30 30 H 1.09003 * 109.47004 * 296.83150 * 4 2 1 31 31 H 0.97000 * 120.00004 * 180.02562 * 8 7 5 32 32 H 1.09004 * 109.46107 * 294.17819 * 14 13 2 33 33 H 1.09005 * 109.46354 * 54.15337 * 14 13 2 34 34 H 1.09006 * 109.49884 * 179.12140 * 15 14 13 35 35 H 1.08998 * 109.50401 * 299.19555 * 15 14 13 36 36 H 1.08995 * 109.52821 * 62.24201 * 16 15 14 37 37 H 1.09004 * 109.52455 * 182.37721 * 16 15 14 38 38 H 1.08993 * 109.50926 * 297.54561 * 20 19 17 39 39 H 1.09009 * 109.50577 * 57.67660 * 20 19 17 40 40 H 1.08996 * 109.51276 * 296.91759 * 21 20 19 41 41 H 1.09002 * 109.54571 * 176.80852 * 21 20 19 42 42 H 1.09004 * 109.50629 * 298.73727 * 23 22 21 43 43 H 1.08997 * 109.55092 * 178.62709 * 23 22 21 44 44 H 1.08998 * 109.50263 * 302.32885 * 24 19 17 45 45 H 1.08999 * 109.50682 * 62.45847 * 24 19 17 46 46 H 1.09002 * 109.46380 * 305.85263 * 25 13 2 47 47 H 1.09008 * 109.46667 * 65.82071 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5450 -0.6536 -1.2890 6 1 4.0795 -0.0789 -0.5471 7 6 4.2395 -1.3252 -2.2726 8 7 3.5889 -2.0293 -3.1729 9 14 6.1049 -1.2408 -2.3224 10 1 6.6723 -2.3485 -1.5123 11 1 6.5689 -1.3671 -3.7274 12 1 6.5565 0.0603 -1.7670 13 7 2.0196 -0.6924 1.1995 14 6 1.5228 -2.0734 1.2496 15 6 2.1666 -2.8060 2.4289 16 6 1.8228 -2.0727 3.7283 17 6 2.3080 -0.6236 3.6311 18 1 3.3922 -0.6096 3.5196 19 7 1.9309 0.1028 4.8510 20 6 2.3053 1.5212 4.7565 21 6 1.8418 2.2511 6.0199 22 8 2.4120 1.6159 7.1675 23 6 2.0674 0.2335 7.2911 24 6 2.5331 -0.5168 6.0404 25 6 1.6601 0.0458 2.4169 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.6312 -0.2413 -2.1383 30 1 1.7238 -1.7640 -1.2212 31 1 4.0775 -2.5021 -3.8648 32 1 0.4399 -2.0654 1.3743 33 1 1.7777 -2.5850 0.3214 34 1 1.7858 -3.8263 2.4751 35 1 3.2485 -2.8270 2.2975 36 1 0.7434 -2.0859 3.8794 37 1 2.3141 -2.5669 4.5665 38 1 3.3879 1.6065 4.6632 39 1 1.8279 1.9663 3.8833 40 1 0.7545 2.2118 6.0849 41 1 2.1666 3.2908 5.9804 42 1 0.9866 0.1355 7.3930 43 1 2.5554 -0.1868 8.1704 44 1 2.2222 -1.5595 6.1046 45 1 3.6194 -0.4641 5.9678 46 1 2.0146 1.0734 2.3366 47 1 0.5766 0.0438 2.5363 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568410098.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:06 Heat of formation + Delta-G solvation = -38.589815 kcal Electronic energy + Delta-G solvation = -23928.437782 eV Core-core repulsion = 20724.930287 eV Total energy + Delta-G solvation = -3203.507495 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.06454 -38.62133 -36.09843 -33.81238 -32.42188 -31.45784 -30.09279 -29.36677 -27.30812 -26.26047 -24.84508 -23.47770 -22.62706 -22.06530 -20.60025 -19.66693 -18.62835 -16.78979 -16.22772 -16.13786 -15.52760 -15.17766 -15.12116 -14.84896 -14.40956 -14.18999 -14.04428 -13.75248 -13.43505 -13.10683 -12.70971 -12.32538 -12.23933 -11.94637 -11.78884 -11.67657 -11.52134 -11.37715 -11.10022 -11.05225 -10.73506 -10.59280 -10.48504 -10.37941 -10.22642 -9.98261 -9.77069 -9.73944 -9.13204 -8.97391 -8.41508 -8.25575 -7.43776 -5.89075 -3.86575 3.38720 3.44785 3.48840 3.57435 3.75490 4.55355 4.59866 4.75751 4.81532 4.88236 5.00776 5.09436 5.17988 5.22340 5.34871 5.39102 5.47905 5.48333 5.55779 5.62931 5.68506 5.74841 5.78289 5.82582 5.88673 5.91187 5.99124 6.04575 6.10720 6.19934 6.21473 6.28871 6.47133 6.62158 6.67805 6.79636 6.88903 6.96211 7.01189 7.01701 7.54877 7.70939 7.94801 8.03562 8.12781 8.57635 9.18971 9.74983 11.22895 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020757 B = 0.004332 C = 0.004160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.607221 B = 6461.829891 C = 6728.913998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.089 3.911 3 H 0.067 0.933 4 C 0.028 3.972 5 C -0.488 4.488 6 H 0.059 0.941 7 C 0.051 3.949 8 N -0.904 5.904 9 Si 0.889 3.111 10 H -0.283 1.283 11 H -0.290 1.290 12 H -0.276 1.276 13 N -0.509 5.509 14 C 0.055 3.945 15 C -0.115 4.115 16 C -0.109 4.109 17 C 0.089 3.911 18 H 0.051 0.949 19 N -0.534 5.534 20 C 0.013 3.987 21 C 0.065 3.935 22 O -0.389 6.389 23 C 0.065 3.935 24 C 0.016 3.984 25 C 0.062 3.938 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.040 0.960 29 H 0.015 0.985 30 H 0.024 0.976 31 H 0.257 0.743 32 H 0.023 0.977 33 H 0.092 0.908 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.056 0.944 38 H 0.044 0.956 39 H 0.091 0.909 40 H 0.058 0.942 41 H 0.096 0.904 42 H 0.057 0.943 43 H 0.095 0.905 44 H 0.088 0.912 45 H 0.042 0.958 46 H 0.066 0.934 47 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.767 3.189 18.039 19.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.019 4.019 3 H 0.085 0.915 4 C -0.009 4.009 5 C -0.526 4.526 6 H 0.077 0.923 7 C -0.148 4.148 8 N -0.545 5.545 9 Si 0.717 3.283 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.201 1.201 13 N -0.233 5.233 14 C -0.073 4.073 15 C -0.153 4.153 16 C -0.147 4.147 17 C -0.019 4.019 18 H 0.069 0.931 19 N -0.259 5.259 20 C -0.115 4.115 21 C -0.012 4.012 22 O -0.307 6.307 23 C -0.012 4.012 24 C -0.113 4.113 25 C -0.067 4.067 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.059 0.941 29 H 0.033 0.967 30 H 0.042 0.958 31 H 0.067 0.933 32 H 0.041 0.959 33 H 0.110 0.890 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.062 0.938 39 H 0.109 0.891 40 H 0.076 0.924 41 H 0.114 0.886 42 H 0.076 0.924 43 H 0.113 0.887 44 H 0.106 0.894 45 H 0.060 0.940 46 H 0.084 0.916 47 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -5.607 3.141 18.037 19.148 hybrid contribution 0.893 -0.119 -0.403 0.987 sum -4.713 3.022 17.634 18.502 Atomic orbital electron populations 1.22520 0.99797 1.01341 1.00639 1.21878 0.90022 0.98232 0.91764 0.91462 1.19237 0.96384 0.95559 0.89718 1.21140 0.91495 1.29135 1.10877 0.92287 1.24984 0.97929 0.95888 0.95984 1.69961 1.35114 1.32983 1.16441 0.86647 0.86567 0.78277 0.76768 1.20952 1.21623 1.20091 1.61969 1.59347 1.01400 1.00602 1.22109 0.95517 0.90135 0.99517 1.21570 1.02102 0.97920 0.93749 1.21636 1.01113 0.94051 0.97865 1.21655 0.98427 0.93518 0.88275 0.93074 1.62238 1.59018 1.01944 1.02733 1.22832 0.99683 0.89522 0.99435 1.22673 0.97969 0.96306 0.84249 1.87962 1.73874 1.23377 1.45511 1.22649 1.00102 0.81491 0.96960 1.22804 0.97738 0.99725 0.91001 1.22058 0.97559 0.97270 0.89804 0.92620 0.92895 0.94087 0.96671 0.95780 0.93336 0.95911 0.88954 0.91901 0.91032 0.91787 0.92509 0.93809 0.89113 0.92403 0.88594 0.92428 0.88719 0.89365 0.94017 0.91562 0.94775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.17 8.50 37.15 0.32 -2.85 16 2 C 0.09 1.80 2.31 -67.72 -0.16 1.64 16 3 H 0.07 1.39 8.07 -51.93 -0.42 0.97 16 4 C 0.03 0.70 4.25 -27.89 -0.12 0.58 16 5 C -0.49 -13.53 8.79 -34.44 -0.30 -13.84 16 6 H 0.06 1.65 7.75 -52.49 -0.41 1.24 16 7 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 8 N -0.90 -27.02 13.29 55.43 0.74 -26.29 16 9 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 10 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 N -0.51 -9.58 4.30 -226.69 -0.98 -10.56 16 14 C 0.05 0.98 4.63 -3.83 -0.02 0.96 16 15 C -0.12 -1.74 6.09 -26.65 -0.16 -1.90 16 16 C -0.11 -1.44 4.97 -26.61 -0.13 -1.57 16 17 C 0.09 1.26 2.10 -67.63 -0.14 1.12 16 18 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 19 N -0.53 -6.60 4.60 -226.23 -1.04 -7.64 16 20 C 0.01 0.16 5.25 -3.72 -0.02 0.14 16 21 C 0.07 0.67 7.01 37.21 0.26 0.93 16 22 O -0.39 -4.55 10.83 -35.23 -0.38 -4.93 16 23 C 0.07 0.63 7.01 37.21 0.26 0.89 16 24 C 0.02 0.17 5.34 -3.71 -0.02 0.15 16 25 C 0.06 0.97 3.95 -3.84 -0.02 0.96 16 26 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.05 0.91 6.51 -51.92 -0.34 0.57 16 28 H 0.04 0.63 6.67 -51.93 -0.35 0.29 16 29 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.02 0.64 6.15 -51.93 -0.32 0.32 16 31 H 0.26 7.33 8.31 -40.82 -0.34 7.00 16 32 H 0.02 0.39 6.61 -51.93 -0.34 0.04 16 33 H 0.09 1.93 5.99 -51.93 -0.31 1.62 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.06 0.67 6.50 -51.93 -0.34 0.33 16 38 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.09 1.04 6.14 -51.92 -0.32 0.72 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.09 0.87 6.24 -51.93 -0.32 0.54 16 45 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.07 1.03 6.28 -51.93 -0.33 0.71 16 47 H 0.03 0.54 6.74 -51.92 -0.35 0.19 16 LS Contribution 345.19 15.07 5.20 5.20 Total: -1.00 -29.93 345.19 -10.17 -40.10 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -8.35 Total: -1.48 kcal Atomic # 6 Polarization: -11.08 SS G_CDS: -0.35 Total: -11.42 kcal Atomic # 7 Polarization: -43.20 SS G_CDS: -1.28 Total: -44.48 kcal Atomic # 8 Polarization: -4.55 SS G_CDS: -0.38 Total: -4.93 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.93 -10.17 -40.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568410098.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.513 kcal (2) G-P(sol) polarization free energy of solvation -29.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds