Wall clock time and date at job start Tue Mar 31 2020 05:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47711 * 2 1 4 4 C 1.53004 * 109.47070 * 120.00187 * 2 1 3 5 5 C 1.50701 * 109.47211 * 185.00010 * 4 2 1 6 6 H 1.08002 * 119.99761 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99694 * 180.27574 * 5 4 2 8 8 N 1.31523 * 119.99908 * 179.72112 * 7 5 4 9 9 Si 1.86800 * 120.00405 * 359.71709 * 7 5 4 10 10 H 1.48500 * 109.47210 * 90.00069 * 9 7 5 11 11 H 1.48504 * 109.47424 * 210.00300 * 9 7 5 12 12 H 1.48502 * 109.46888 * 330.00390 * 9 7 5 13 13 N 1.46904 * 109.46946 * 239.99657 * 2 1 3 14 14 C 1.46854 * 110.99976 * 306.04836 * 13 2 1 15 15 C 1.53036 * 109.51883 * 185.84060 * 14 13 2 16 16 C 1.53121 * 109.28208 * 300.81755 * 15 14 13 17 17 C 1.53123 * 109.15436 * 57.65866 * 16 15 14 18 18 H 1.08999 * 109.50158 * 62.33066 * 17 16 15 19 19 N 1.46908 * 109.50001 * 182.40641 * 17 16 15 20 20 C 1.47014 * 110.99745 * 58.63231 * 19 17 16 21 21 C 1.53100 * 109.25086 * 177.60838 * 20 19 17 22 22 O 1.43011 * 109.26159 * 56.85600 * 21 20 19 23 23 C 1.43023 * 113.73438 * 301.32648 * 22 21 20 24 24 C 1.47014 * 110.99605 * 295.00373 * 19 17 16 25 25 C 1.46842 * 111.00061 * 70.25942 * 13 2 1 26 26 H 1.09004 * 109.46837 * 59.99882 * 1 2 3 27 27 H 1.08998 * 109.47711 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46991 * 300.00620 * 1 2 3 29 29 H 1.09000 * 109.47211 * 64.99037 * 4 2 1 30 30 H 1.09007 * 109.46376 * 304.99579 * 4 2 1 31 31 H 0.96995 * 120.00181 * 179.97438 * 8 7 5 32 32 H 1.09000 * 109.46033 * 305.85690 * 14 13 2 33 33 H 1.08994 * 109.45804 * 65.83191 * 14 13 2 34 34 H 1.08993 * 109.50644 * 60.76519 * 15 14 13 35 35 H 1.09001 * 109.49645 * 180.87907 * 15 14 13 36 36 H 1.08996 * 109.52421 * 177.56724 * 16 15 14 37 37 H 1.09004 * 109.52335 * 297.69210 * 16 15 14 38 38 H 1.08991 * 109.51015 * 297.54321 * 20 19 17 39 39 H 1.08999 * 109.50822 * 57.67754 * 20 19 17 40 40 H 1.08998 * 109.50897 * 296.91245 * 21 20 19 41 41 H 1.09010 * 109.50260 * 176.78821 * 21 20 19 42 42 H 1.09004 * 109.49970 * 298.73641 * 23 22 21 43 43 H 1.09001 * 109.53762 * 178.63157 * 23 22 21 44 44 H 1.09003 * 109.50510 * 302.31985 * 24 19 17 45 45 H 1.08990 * 109.51110 * 62.41074 * 24 19 17 46 46 H 1.08996 * 109.46154 * 294.17469 * 25 13 2 47 47 H 1.09000 * 109.46303 * 54.14547 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5419 -0.6150 1.3128 6 1 4.0790 -0.0862 0.5392 7 6 4.2307 -1.1981 2.3551 8 7 5.5419 -1.1100 2.4076 9 14 3.3018 -2.1131 3.6927 10 1 3.1647 -3.5418 3.3115 11 1 4.0487 -2.0116 4.9722 12 1 1.9534 -1.5133 3.8578 13 7 2.0196 -0.6926 -1.1994 14 6 1.4344 -2.0351 -1.3077 15 6 2.0743 -2.7787 -2.4823 16 6 1.8317 -1.9903 -3.7723 17 6 2.4080 -0.5804 -3.6154 18 1 3.4855 -0.6426 -3.4628 19 7 2.1287 0.2013 -4.8275 20 6 0.6828 0.2802 -5.0818 21 6 0.4343 1.1509 -6.3164 22 8 1.1508 0.6080 -7.4286 23 6 2.5621 0.5172 -7.2154 24 6 2.8322 -0.3599 -5.9900 25 6 1.7585 0.0995 -2.4080 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.7515 -1.7715 1.2057 30 1 1.6053 -0.2617 2.1370 31 1 6.0266 -1.5199 3.1411 32 1 1.6176 -2.5866 -0.3855 33 1 0.3604 -1.9507 -1.4731 34 1 3.1463 -2.8755 -2.3111 35 1 1.6286 -3.7693 -2.5719 36 1 2.3227 -2.4940 -4.6049 37 1 0.7606 -1.9277 -3.9650 38 1 0.2889 -0.7208 -5.2572 39 1 0.1850 0.7220 -4.2187 40 1 0.7798 2.1661 -6.1213 41 1 -0.6320 1.1658 -6.5425 42 1 2.9694 1.5141 -7.0464 43 1 3.0355 0.0743 -8.0916 44 1 3.9034 -0.3853 -5.7897 45 1 2.4733 -1.3714 -6.1793 46 1 0.6829 0.1738 -2.5681 47 1 2.1770 1.0984 -2.2850 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568410099.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:09 Heat of formation + Delta-G solvation = -33.526095 kcal Electronic energy + Delta-G solvation = -23991.880458 eV Core-core repulsion = 20788.592542 eV Total energy + Delta-G solvation = -3203.287916 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.26525 -38.64637 -36.24405 -33.72337 -32.30090 -31.41431 -30.37026 -29.46590 -27.76966 -26.30482 -24.58879 -23.90837 -22.50273 -22.25413 -20.91707 -19.21943 -18.59731 -16.73989 -16.55482 -16.30610 -15.51957 -15.30738 -15.20715 -14.72551 -14.33720 -14.30408 -14.11617 -13.88228 -13.55945 -13.15113 -12.57124 -12.43416 -12.36769 -12.14069 -11.99412 -11.78206 -11.65432 -11.47014 -11.45058 -11.00861 -10.83038 -10.64885 -10.48694 -10.38118 -10.16005 -9.98513 -9.81147 -9.68759 -9.50590 -9.01655 -8.41766 -8.33083 -7.50386 -5.90358 -3.84321 3.35006 3.43103 3.45143 3.58157 3.74944 4.51246 4.54540 4.74268 4.81935 4.88955 4.98513 5.01653 5.09906 5.15874 5.22551 5.36897 5.43001 5.44609 5.50622 5.55009 5.63019 5.67196 5.71637 5.73119 5.77310 5.82963 5.89079 5.95402 5.99430 6.07665 6.21915 6.24078 6.36181 6.45919 6.56089 6.62221 6.78709 6.89643 6.96275 6.99987 7.14291 7.33215 7.80624 7.83834 7.96742 8.72850 9.22667 9.72666 11.23697 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028882 B = 0.004088 C = 0.003944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.218644 B = 6847.332376 C = 7098.057461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.098 3.902 3 H 0.076 0.924 4 C -0.006 4.006 5 C -0.489 4.489 6 H 0.079 0.921 7 C 0.062 3.938 8 N -0.908 5.908 9 Si 0.871 3.129 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.268 1.268 13 N -0.507 5.507 14 C 0.055 3.945 15 C -0.112 4.112 16 C -0.149 4.149 17 C 0.089 3.911 18 H 0.096 0.904 19 N -0.529 5.529 20 C 0.011 3.989 21 C 0.064 3.936 22 O -0.389 6.389 23 C 0.064 3.936 24 C 0.017 3.983 25 C 0.066 3.934 26 H 0.042 0.958 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.012 0.988 30 H 0.018 0.982 31 H 0.259 0.741 32 H 0.084 0.916 33 H 0.022 0.978 34 H 0.076 0.924 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.045 0.955 39 H 0.088 0.912 40 H 0.059 0.941 41 H 0.094 0.906 42 H 0.059 0.941 43 H 0.095 0.905 44 H 0.087 0.913 45 H 0.044 0.956 46 H 0.025 0.975 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.416 1.223 -16.711 19.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.010 4.010 3 H 0.094 0.906 4 C -0.044 4.044 5 C -0.528 4.528 6 H 0.097 0.903 7 C -0.137 4.137 8 N -0.548 5.548 9 Si 0.699 3.301 10 H -0.206 1.206 11 H -0.216 1.216 12 H -0.193 1.193 13 N -0.231 5.231 14 C -0.073 4.073 15 C -0.151 4.151 16 C -0.188 4.188 17 C -0.019 4.019 18 H 0.114 0.886 19 N -0.253 5.253 20 C -0.118 4.118 21 C -0.013 4.013 22 O -0.308 6.308 23 C -0.013 4.013 24 C -0.112 4.112 25 C -0.062 4.062 26 H 0.061 0.939 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.030 0.970 30 H 0.036 0.964 31 H 0.069 0.931 32 H 0.102 0.898 33 H 0.040 0.960 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.063 0.937 39 H 0.106 0.894 40 H 0.077 0.923 41 H 0.112 0.888 42 H 0.077 0.923 43 H 0.113 0.887 44 H 0.105 0.895 45 H 0.063 0.937 46 H 0.042 0.958 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.659 1.558 -16.654 19.315 hybrid contribution -1.428 -1.308 0.905 2.138 sum -11.087 0.249 -15.749 19.262 Atomic orbital electron populations 1.22559 0.99778 1.01293 1.00919 1.21674 0.89794 0.98516 0.90975 0.90582 1.19694 0.98057 0.94962 0.91668 1.21051 0.89342 1.33698 1.08672 0.90281 1.25002 0.94636 0.96331 0.97768 1.69913 1.06357 1.46144 1.32403 0.86923 0.80430 0.80609 0.82107 1.20619 1.21632 1.19333 1.61881 1.58585 1.01590 1.01000 1.22090 0.94902 0.91130 0.99135 1.21513 1.02534 0.97438 0.93577 1.22232 1.00632 0.97436 0.98527 1.21775 1.01569 0.89999 0.88544 0.88620 1.62399 1.07979 1.51838 1.03098 1.22868 0.89937 0.99830 0.99126 1.22670 0.96676 0.96517 0.85427 1.87957 1.19161 1.84575 1.39064 1.22669 0.81820 0.99646 0.97149 1.22772 1.00144 0.97169 0.91087 1.22029 0.96960 0.97629 0.89612 0.93882 0.92922 0.92495 0.96993 0.96433 0.93094 0.89778 0.95974 0.90572 0.92254 0.92339 0.92477 0.93701 0.89418 0.92296 0.88784 0.92263 0.88667 0.89485 0.93741 0.95753 0.90448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.97 8.44 37.16 0.31 -2.66 16 2 C 0.10 1.90 2.25 -67.71 -0.15 1.75 16 3 H 0.08 1.53 7.98 -51.93 -0.41 1.12 16 4 C -0.01 -0.15 3.44 -27.88 -0.10 -0.25 16 5 C -0.49 -13.72 9.39 -34.44 -0.32 -14.05 16 6 H 0.08 2.44 7.99 -52.49 -0.42 2.02 16 7 C 0.06 1.81 5.47 -17.82 -0.10 1.71 16 8 N -0.91 -28.20 13.96 55.43 0.77 -27.42 16 9 Si 0.87 21.76 27.46 -169.99 -4.67 17.09 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 12 H -0.27 -6.43 6.55 56.52 0.37 -6.06 16 13 N -0.51 -9.26 4.32 -226.69 -0.98 -10.24 16 14 C 0.06 0.93 4.54 -3.83 -0.02 0.91 16 15 C -0.11 -1.64 6.09 -26.65 -0.16 -1.80 16 16 C -0.15 -1.93 4.58 -26.61 -0.12 -2.06 16 17 C 0.09 1.24 2.40 -67.63 -0.16 1.07 16 18 H 0.10 1.50 8.12 -51.93 -0.42 1.08 16 19 N -0.53 -6.44 4.72 -226.23 -1.07 -7.51 16 20 C 0.01 0.12 4.86 -3.71 -0.02 0.10 16 21 C 0.06 0.64 7.01 37.21 0.26 0.90 16 22 O -0.39 -4.45 10.83 -35.23 -0.38 -4.83 16 23 C 0.06 0.63 7.01 37.21 0.26 0.89 16 24 C 0.02 0.18 5.31 -3.71 -0.02 0.16 16 25 C 0.07 1.02 4.25 -3.84 -0.02 1.00 16 26 H 0.04 0.61 6.82 -51.93 -0.35 0.26 16 27 H 0.05 0.82 6.46 -51.93 -0.34 0.49 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.01 0.28 5.65 -51.93 -0.29 -0.01 16 30 H 0.02 0.41 7.21 -51.93 -0.37 0.04 16 31 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 32 H 0.08 1.58 6.13 -51.93 -0.32 1.26 16 33 H 0.02 0.34 6.58 -51.93 -0.34 0.00 16 34 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.71 6.71 -51.93 -0.35 0.36 16 37 H 0.06 0.73 6.32 -51.93 -0.33 0.40 16 38 H 0.04 0.51 6.37 -51.93 -0.33 0.18 16 39 H 0.09 0.96 6.20 -51.93 -0.32 0.64 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.09 0.76 8.14 -51.92 -0.42 0.34 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.09 0.89 8.13 -51.93 -0.42 0.47 16 45 H 0.04 0.49 6.62 -51.93 -0.34 0.15 16 46 H 0.02 0.35 5.07 -51.93 -0.26 0.09 16 47 H 0.08 1.26 8.01 -51.93 -0.42 0.84 16 LS Contribution 338.78 15.07 5.11 5.11 Total: -1.00 -30.59 338.78 -9.74 -40.33 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -8.17 Total: -0.20 kcal Atomic # 6 Polarization: -11.97 SS G_CDS: -0.35 Total: -12.32 kcal Atomic # 7 Polarization: -43.90 SS G_CDS: -1.27 Total: -45.18 kcal Atomic # 8 Polarization: -4.45 SS G_CDS: -0.38 Total: -4.83 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.09 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.59 -9.74 -40.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568410099.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.805 kcal (2) G-P(sol) polarization free energy of solvation -30.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds