Wall clock time and date at job start Tue Mar 31 2020 05:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08993 * 109.46959 * 2 1 4 4 C 1.53001 * 109.47125 * 240.00090 * 2 1 3 5 5 C 1.50704 * 109.46970 * 62.93749 * 4 2 1 6 6 H 1.08005 * 119.99936 * 355.35575 * 5 4 2 7 7 C 1.37881 * 119.99850 * 175.35275 * 5 4 2 8 8 N 1.31514 * 119.99923 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99859 * 180.27888 * 7 5 4 10 10 H 1.48496 * 109.47180 * 179.72541 * 9 7 5 11 11 H 1.48507 * 109.47108 * 299.72392 * 9 7 5 12 12 H 1.48504 * 109.47425 * 59.72449 * 9 7 5 13 13 N 1.46903 * 109.47110 * 120.00158 * 2 1 3 14 14 C 1.46849 * 110.99607 * 173.73374 * 13 2 1 15 15 C 1.53036 * 109.51883 * 185.84020 * 14 13 2 16 16 C 1.53119 * 109.27973 * 300.81869 * 15 14 13 17 17 C 1.53118 * 109.16108 * 57.65553 * 16 15 14 18 18 H 1.09004 * 109.53201 * 62.30511 * 17 16 15 19 19 N 1.46897 * 109.50424 * 182.40517 * 17 16 15 20 20 C 1.47011 * 110.99984 * 58.44116 * 19 17 16 21 21 C 1.53095 * 109.25952 * 177.60753 * 20 19 17 22 22 O 1.43016 * 109.26111 * 56.84492 * 21 20 19 23 23 C 1.43012 * 113.73861 * 301.33319 * 22 21 20 24 24 C 1.47014 * 111.00178 * 294.80200 * 19 17 16 25 25 C 1.46845 * 111.00014 * 297.94088 * 13 2 1 26 26 H 1.08998 * 109.47119 * 60.00030 * 1 2 3 27 27 H 1.09001 * 109.46802 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46738 * 299.99718 * 1 2 3 29 29 H 1.09002 * 109.46752 * 302.94325 * 4 2 1 30 30 H 1.08997 * 109.47206 * 182.93942 * 4 2 1 31 31 H 0.97001 * 119.99907 * 180.02562 * 8 7 5 32 32 H 1.08995 * 109.46134 * 305.85266 * 14 13 2 33 33 H 1.08995 * 109.46348 * 65.82593 * 14 13 2 34 34 H 1.08999 * 109.50141 * 180.87923 * 15 14 13 35 35 H 1.09003 * 109.50554 * 60.76258 * 15 14 13 36 36 H 1.09000 * 109.52358 * 297.75246 * 16 15 14 37 37 H 1.08995 * 109.57943 * 177.59401 * 16 15 14 38 38 H 1.09005 * 109.50757 * 297.53863 * 20 19 17 39 39 H 1.09000 * 109.51240 * 57.66895 * 20 19 17 40 40 H 1.09005 * 109.50801 * 296.91115 * 21 20 19 41 41 H 1.09001 * 109.50910 * 176.78099 * 21 20 19 42 42 H 1.08999 * 109.50676 * 298.73481 * 23 22 21 43 43 H 1.09002 * 109.54378 * 178.62423 * 23 22 21 44 44 H 1.08998 * 109.50887 * 302.32790 * 24 19 17 45 45 H 1.09001 * 109.50471 * 62.41483 * 24 19 17 46 46 H 1.09002 * 109.46394 * 294.18058 * 25 13 2 47 47 H 1.09003 * 109.46323 * 54.15715 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.5980 0.0300 -2.4786 6 1 0.9498 0.8886 -2.3829 7 6 2.0213 -0.3786 -3.7256 8 7 2.8103 -1.4243 -3.8422 9 14 1.4797 0.5572 -5.2488 10 1 2.0721 -0.0749 -6.4549 11 1 -0.0016 0.5240 -5.3496 12 1 1.9379 1.9666 -5.1530 13 7 2.0197 -0.6925 1.1994 14 6 3.4800 -0.8430 1.1608 15 6 3.9381 -1.6926 2.3484 16 6 3.5107 -1.0118 3.6517 17 6 1.9912 -0.8232 3.6454 18 1 1.5032 -1.7970 3.6047 19 7 1.5793 -0.1188 4.8669 20 6 2.2461 1.1872 4.9722 21 6 1.7445 1.9107 6.2247 22 8 1.9803 1.0884 7.3708 23 6 1.3449 -0.1910 7.3020 24 6 1.8425 -0.9359 6.0604 25 6 1.5895 0.0011 2.4201 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6343 -1.7325 -1.2760 30 1 3.1288 -0.7671 -1.2233 31 1 3.1083 -1.7116 -4.7194 32 1 3.7702 -1.3322 0.2310 33 1 3.9480 0.1398 1.2154 34 1 5.0234 -1.7911 2.3283 35 1 3.4812 -2.6804 2.2870 36 1 3.9980 -0.0402 3.7319 37 1 3.7969 -1.6340 4.4997 38 1 3.3239 1.0409 5.0435 39 1 2.0169 1.7851 4.0901 40 1 0.6761 2.1048 6.1296 41 1 2.2779 2.8545 6.3380 42 1 0.2650 -0.0581 7.2382 43 1 1.5886 -0.7676 8.1943 44 1 1.3186 -1.8877 5.9727 45 1 2.9137 -1.1168 6.1486 46 1 2.0664 0.9801 2.4688 47 1 0.5067 0.1250 2.4050 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568410100.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:11 Heat of formation + Delta-G solvation = -39.478747 kcal Electronic energy + Delta-G solvation = -23654.458134 eV Core-core repulsion = 20450.912092 eV Total energy + Delta-G solvation = -3203.546042 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.28335 -38.54913 -36.15723 -33.89889 -32.44608 -31.44951 -30.23806 -29.71732 -27.12975 -26.13614 -24.60391 -24.07146 -22.94750 -21.78336 -20.89227 -19.14029 -18.99698 -16.86935 -16.49481 -16.34464 -15.43793 -15.26167 -15.12801 -14.66856 -14.54224 -14.42231 -14.17581 -13.76250 -13.38396 -13.00646 -12.89586 -12.55034 -12.40309 -12.01248 -11.80952 -11.59567 -11.40497 -11.25434 -11.13224 -10.87685 -10.84919 -10.78448 -10.64374 -10.49996 -10.19857 -10.08071 -9.85638 -9.82018 -9.17060 -9.01268 -8.39442 -8.32516 -7.66496 -5.99928 -4.01342 3.32889 3.37565 3.39563 3.53409 3.70640 4.40248 4.53906 4.70164 4.76648 4.84861 4.94139 4.96349 5.05650 5.11410 5.18330 5.33015 5.35957 5.40450 5.46516 5.52800 5.60406 5.66223 5.74900 5.81778 5.86536 5.93170 5.96905 6.02545 6.12232 6.16314 6.31433 6.36623 6.48763 6.55130 6.71002 6.83920 6.89942 6.94122 6.96955 7.12288 7.55532 7.64256 7.83211 7.88097 8.07849 8.44214 9.04513 9.61798 11.11492 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.034607 B = 0.003496 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.883471 B = 8008.261274 C = 8398.551079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.088 3.912 3 H 0.025 0.975 4 C 0.030 3.970 5 C -0.518 4.518 6 H 0.055 0.945 7 C 0.058 3.942 8 N -0.895 5.895 9 Si 0.891 3.109 10 H -0.288 1.288 11 H -0.277 1.277 12 H -0.278 1.278 13 N -0.533 5.533 14 C 0.051 3.949 15 C -0.111 4.111 16 C -0.151 4.151 17 C 0.090 3.910 18 H 0.092 0.908 19 N -0.529 5.529 20 C 0.010 3.990 21 C 0.064 3.936 22 O -0.389 6.389 23 C 0.064 3.936 24 C 0.017 3.983 25 C 0.063 3.937 26 H 0.065 0.935 27 H 0.054 0.946 28 H 0.032 0.968 29 H 0.022 0.978 30 H 0.022 0.978 31 H 0.261 0.739 32 H 0.093 0.907 33 H 0.023 0.977 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.046 0.954 39 H 0.089 0.911 40 H 0.059 0.941 41 H 0.095 0.905 42 H 0.059 0.941 43 H 0.095 0.905 44 H 0.085 0.915 45 H 0.045 0.955 46 H 0.024 0.976 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.678 2.220 20.213 20.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.019 4.019 3 H 0.043 0.957 4 C -0.007 4.007 5 C -0.556 4.556 6 H 0.073 0.927 7 C -0.143 4.143 8 N -0.534 5.534 9 Si 0.719 3.281 10 H -0.213 1.213 11 H -0.202 1.202 12 H -0.203 1.203 13 N -0.258 5.258 14 C -0.077 4.077 15 C -0.149 4.149 16 C -0.190 4.190 17 C -0.018 4.018 18 H 0.110 0.890 19 N -0.254 5.254 20 C -0.118 4.118 21 C -0.013 4.013 22 O -0.307 6.307 23 C -0.013 4.013 24 C -0.112 4.112 25 C -0.066 4.066 26 H 0.084 0.916 27 H 0.073 0.927 28 H 0.051 0.949 29 H 0.040 0.960 30 H 0.041 0.959 31 H 0.070 0.930 32 H 0.112 0.888 33 H 0.041 0.959 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.064 0.936 39 H 0.107 0.893 40 H 0.077 0.923 41 H 0.113 0.887 42 H 0.077 0.923 43 H 0.113 0.887 44 H 0.104 0.896 45 H 0.063 0.937 46 H 0.042 0.958 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.201 1.795 20.216 20.331 hybrid contribution 0.903 1.032 -1.168 1.801 sum -0.298 2.827 19.048 19.259 Atomic orbital electron populations 1.21764 0.95323 1.01614 1.00040 1.21800 0.95006 0.95169 0.89948 0.95678 1.19217 0.96408 0.95839 0.89225 1.21183 1.29841 1.13411 0.91202 0.92652 1.24986 0.95175 0.95134 0.99019 1.69954 1.34473 1.25153 1.23796 0.86684 0.78948 0.80023 0.82494 1.21334 1.20222 1.20347 1.61930 1.10821 1.51279 1.01767 1.22171 0.88070 0.98119 0.99364 1.21521 0.99935 0.99844 0.93608 1.22249 0.97529 1.00741 0.98491 1.21765 0.93372 0.98137 0.88554 0.89026 1.62395 1.57527 1.03364 1.02081 1.22883 0.97440 0.91962 0.99549 1.22678 1.00809 0.93380 0.84408 1.87963 1.74237 1.27335 1.41171 1.22658 0.97170 0.84183 0.97273 1.22771 1.00120 0.97503 0.90765 1.22076 1.01197 0.94121 0.89190 0.91615 0.92665 0.94901 0.96007 0.95937 0.92981 0.88836 0.95883 0.91988 0.91133 0.92259 0.92352 0.93585 0.89272 0.92285 0.88662 0.92315 0.88679 0.89639 0.93714 0.95760 0.89968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.49 8.81 37.16 0.33 -2.16 16 2 C 0.09 1.83 2.13 -67.71 -0.14 1.68 16 3 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 4 C 0.03 0.77 4.15 -27.88 -0.12 0.65 16 5 C -0.52 -14.32 8.48 -34.44 -0.29 -14.61 16 6 H 0.06 1.49 6.75 -52.48 -0.35 1.13 16 7 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 8 N -0.89 -26.58 13.29 55.43 0.74 -25.84 16 9 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 N -0.53 -9.57 4.52 -226.69 -1.03 -10.59 16 14 C 0.05 0.87 5.09 -3.83 -0.02 0.85 16 15 C -0.11 -1.54 6.09 -26.65 -0.16 -1.70 16 16 C -0.15 -1.88 4.58 -26.61 -0.12 -2.00 16 17 C 0.09 1.16 2.39 -67.63 -0.16 1.00 16 18 H 0.09 1.25 8.12 -51.93 -0.42 0.83 16 19 N -0.53 -6.09 4.72 -226.24 -1.07 -7.16 16 20 C 0.01 0.11 4.86 -3.71 -0.02 0.09 16 21 C 0.06 0.63 7.01 37.21 0.26 0.89 16 22 O -0.39 -4.31 10.83 -35.23 -0.38 -4.69 16 23 C 0.06 0.58 7.01 37.21 0.26 0.85 16 24 C 0.02 0.16 5.31 -3.71 -0.02 0.15 16 25 C 0.06 0.95 4.37 -3.84 -0.02 0.93 16 26 H 0.06 1.32 6.72 -51.93 -0.35 0.97 16 27 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.03 0.54 6.32 -51.93 -0.33 0.21 16 29 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.02 0.61 6.03 -51.93 -0.31 0.29 16 31 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 32 H 0.09 1.85 5.80 -51.93 -0.30 1.54 16 33 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.06 0.76 6.31 -51.93 -0.33 0.43 16 37 H 0.06 0.67 6.71 -51.93 -0.35 0.32 16 38 H 0.05 0.53 6.37 -51.93 -0.33 0.20 16 39 H 0.09 1.00 6.20 -51.93 -0.32 0.67 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.09 0.77 8.13 -51.93 -0.42 0.34 16 45 H 0.04 0.46 6.62 -51.93 -0.34 0.12 16 46 H 0.02 0.37 6.34 -51.93 -0.33 0.04 16 47 H 0.08 1.28 6.07 -51.93 -0.32 0.96 16 LS Contribution 342.19 15.07 5.16 5.16 Total: -1.00 -29.45 342.19 -10.09 -39.55 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -8.17 Total: -1.05 kcal Atomic # 6 Polarization: -11.52 SS G_CDS: -0.32 Total: -11.84 kcal Atomic # 7 Polarization: -42.24 SS G_CDS: -1.36 Total: -43.60 kcal Atomic # 8 Polarization: -4.31 SS G_CDS: -0.38 Total: -4.69 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.45 -10.09 -39.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568410100.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.068 kcal (2) G-P(sol) polarization free energy of solvation -29.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds