Wall clock time and date at job start Tue Mar 31 2020 05:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09010 * 109.50229 * 2 1 4 4 C 1.53094 * 109.50878 * 239.86804 * 2 1 3 5 5 O 1.43019 * 109.25433 * 183.21461 * 4 2 1 6 6 C 1.43014 * 113.73902 * 58.67103 * 5 4 2 7 7 C 1.53093 * 109.25912 * 301.32668 * 6 5 4 8 8 N 1.47008 * 109.25755 * 56.84969 * 7 6 5 9 9 C 1.46905 * 111.00038 * 177.60660 * 8 7 6 10 10 C 1.53114 * 109.52510 * 298.63352 * 9 8 7 11 11 C 1.53028 * 109.28006 * 177.55796 * 10 9 8 12 12 N 1.46845 * 109.52455 * 300.81994 * 11 10 9 13 13 C 1.46902 * 111.00049 * 185.83891 * 12 11 10 14 14 C 1.53001 * 109.47217 * 170.00083 * 13 12 11 15 15 C 1.50694 * 109.47168 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00563 * 0.02562 * 15 14 13 17 17 C 1.37885 * 119.99902 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46985 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47276 * 299.99832 * 19 17 15 22 22 H 1.48498 * 109.47150 * 60.00043 * 19 17 15 23 23 C 1.46841 * 111.19494 * 61.74367 * 12 11 10 24 24 C 1.53036 * 109.52644 * 298.25617 * 23 12 11 25 25 H 1.08999 * 109.47030 * 299.91289 * 1 2 3 26 26 H 1.09000 * 109.47148 * 59.91857 * 1 2 3 27 27 H 1.09001 * 109.46521 * 179.91300 * 1 2 3 28 28 H 1.08997 * 109.50891 * 303.14701 * 4 2 1 29 29 H 1.08994 * 109.50769 * 63.28173 * 4 2 1 30 30 H 1.09001 * 109.50772 * 61.26278 * 6 5 4 31 31 H 1.09003 * 109.50811 * 181.34289 * 6 5 4 32 32 H 1.09000 * 109.50877 * 296.91460 * 7 6 5 33 33 H 1.09005 * 109.50191 * 176.78186 * 7 6 5 34 34 H 1.09002 * 109.57252 * 178.47098 * 9 8 7 35 35 H 1.09005 * 109.50329 * 57.61447 * 10 9 8 36 36 H 1.09002 * 109.50488 * 297.50491 * 10 9 8 37 37 H 1.09007 * 109.46362 * 180.80287 * 11 10 9 38 38 H 1.08999 * 109.46399 * 60.84323 * 11 10 9 39 39 H 1.09002 * 109.46978 * 50.00353 * 13 12 11 40 40 H 1.08998 * 109.47251 * 289.99871 * 13 12 11 41 41 H 1.09007 * 109.46922 * 59.99765 * 14 13 12 42 42 H 1.09003 * 109.46836 * 300.00520 * 14 13 12 43 43 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 44 44 H 1.08999 * 109.46386 * 58.27606 * 23 12 11 45 45 H 1.09001 * 109.46466 * 178.24286 * 23 12 11 46 46 H 1.08995 * 109.50256 * 299.24342 * 24 23 12 47 47 H 1.08995 * 109.53938 * 179.14130 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0276 0.0000 4 6 2.0413 -0.7244 -1.2481 5 8 3.4695 -0.7871 -1.2052 6 6 3.9819 -1.4577 -0.0506 7 6 3.4903 -0.7407 1.2095 8 7 2.0210 -0.6946 1.1991 9 6 1.5054 -0.0634 2.4213 10 6 1.9334 -0.8842 3.6409 11 6 1.4457 -0.1894 4.9141 12 7 2.0172 1.1614 4.9858 13 6 1.6825 1.8077 6.2618 14 6 2.4914 3.0981 6.4076 15 6 2.1484 3.7608 7.7169 16 1 1.4261 3.3068 8.3791 17 6 2.7568 4.9468 8.0695 18 7 3.6368 5.4995 7.2633 19 14 2.3312 5.7686 9.6921 20 1 3.1164 7.0211 9.8336 21 1 0.8810 6.0870 9.7202 22 1 2.6582 4.8506 10.8126 23 6 1.5816 1.9831 3.8495 24 6 2.0734 1.3532 2.5444 25 1 -0.3633 0.5125 0.8908 26 1 -0.3633 0.5151 -0.8892 27 1 -0.3632 -1.0277 -0.0016 28 1 1.6333 -1.7348 -1.2752 29 1 1.7274 -0.1804 -2.1388 30 1 3.6303 -2.4894 -0.0430 31 1 5.0716 -1.4448 -0.0759 32 1 3.8862 0.2747 1.2285 33 1 3.8313 -1.2816 2.0924 34 1 0.4172 -0.0169 2.3772 35 1 3.0204 -0.9633 3.6631 36 1 1.4967 -1.8811 3.5802 37 1 1.7612 -0.7639 5.7851 38 1 0.3578 -0.1231 4.8978 39 1 1.9222 1.1337 7.0843 40 1 0.6181 2.0418 6.2823 41 1 2.2517 3.7721 5.5850 42 1 3.5558 2.8640 6.3870 43 1 4.0645 6.3341 7.5112 44 1 0.4931 2.0393 3.8381 45 1 1.9959 2.9866 3.9470 46 1 3.1625 1.3093 2.5493 47 1 1.7372 1.9547 1.6999 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000576777943.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:23 Heat of formation + Delta-G solvation = -42.676793 kcal Electronic energy + Delta-G solvation = -23486.151659 eV Core-core repulsion = 20282.466940 eV Total energy + Delta-G solvation = -3203.684720 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.44581 -38.41352 -36.12730 -33.63383 -32.83672 -31.63804 -30.64978 -29.14664 -27.68629 -26.53183 -24.43109 -23.22840 -22.81001 -22.48914 -20.50261 -19.96083 -18.90133 -16.81094 -16.57699 -16.34164 -15.61307 -15.13871 -14.99537 -14.90234 -14.49198 -14.38574 -14.22221 -13.77880 -13.46002 -13.15162 -12.70525 -12.42620 -12.38551 -12.22715 -12.17042 -11.75668 -11.59372 -11.43260 -11.21142 -11.09073 -10.91907 -10.77446 -10.63688 -10.58572 -10.40634 -10.13861 -9.81829 -9.72379 -9.34693 -9.13247 -8.36839 -8.29845 -7.70731 -5.99748 -4.02263 3.32979 3.37419 3.39671 3.57713 3.72081 4.36768 4.52340 4.56650 4.73644 4.75249 4.93384 4.99884 5.05642 5.10513 5.23944 5.26822 5.35967 5.36263 5.41062 5.46034 5.50478 5.55142 5.59800 5.69264 5.76276 5.80424 5.88852 5.90151 5.93589 6.05480 6.13907 6.23663 6.25571 6.36188 6.50296 6.54687 6.87766 6.92782 6.97339 6.99513 7.51703 7.59497 7.80536 7.89919 8.08404 8.43422 9.04812 9.61273 11.11559 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.031947 B = 0.003232 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.242393 B = 8661.175163 C = 8793.074632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.040 3.960 3 H 0.054 0.946 4 C 0.070 3.930 5 O -0.387 6.387 6 C 0.064 3.936 7 C 0.010 3.990 8 N -0.526 5.526 9 C 0.082 3.918 10 C -0.106 4.106 11 C 0.056 3.944 12 N -0.538 5.538 13 C 0.064 3.936 14 C 0.029 3.971 15 C -0.523 4.523 16 H 0.053 0.947 17 C 0.058 3.942 18 N -0.893 5.893 19 Si 0.892 3.108 20 H -0.287 1.287 21 H -0.277 1.277 22 H -0.277 1.277 23 C 0.061 3.939 24 C -0.147 4.147 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.094 0.906 30 H 0.056 0.944 31 H 0.096 0.904 32 H 0.050 0.950 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.025 0.975 39 H 0.061 0.939 40 H 0.018 0.982 41 H 0.016 0.984 42 H 0.024 0.976 43 H 0.261 0.739 44 H 0.024 0.976 45 H 0.086 0.914 46 H 0.073 0.927 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.257 -14.468 -15.915 21.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.068 4.068 3 H 0.072 0.928 4 C -0.007 4.007 5 O -0.306 6.306 6 C -0.013 4.013 7 C -0.117 4.117 8 N -0.250 5.250 9 C -0.026 4.026 10 C -0.144 4.144 11 C -0.073 4.073 12 N -0.263 5.263 13 C -0.063 4.063 14 C -0.009 4.009 15 C -0.562 4.562 16 H 0.071 0.929 17 C -0.143 4.143 18 N -0.532 5.532 19 Si 0.720 3.280 20 H -0.213 1.213 21 H -0.203 1.203 22 H -0.202 1.202 23 C -0.068 4.068 24 C -0.186 4.186 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.112 0.888 30 H 0.075 0.925 31 H 0.114 0.886 32 H 0.069 0.931 33 H 0.109 0.891 34 H 0.101 0.899 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.043 0.957 39 H 0.079 0.921 40 H 0.037 0.963 41 H 0.034 0.966 42 H 0.042 0.958 43 H 0.071 0.929 44 H 0.042 0.958 45 H 0.104 0.896 46 H 0.092 0.908 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.688 -14.780 -16.131 22.187 hybrid contribution -0.967 1.422 1.276 2.141 sum -4.655 -13.359 -14.855 20.513 Atomic orbital electron populations 1.21823 0.93697 1.02637 1.02189 1.22306 0.96245 0.97030 0.91242 0.92815 1.22695 0.80956 1.00124 0.96903 1.87977 1.20672 1.78589 1.43340 1.22688 0.98873 0.95500 0.84233 1.22877 0.88503 1.00956 0.99413 1.62523 1.08256 1.52504 1.01708 1.21869 0.99540 0.92278 0.88941 1.21638 1.01906 0.98059 0.92759 1.22036 0.96334 0.91304 0.97635 1.62024 1.59306 1.01624 1.03337 1.22315 0.97663 0.98148 0.88179 1.19089 0.95689 0.89699 0.96389 1.21164 1.24040 1.06818 1.04185 0.92868 1.24994 0.95071 0.97205 0.97016 1.69964 1.27597 1.19071 1.36601 0.86657 0.78381 0.78772 0.84170 1.21266 1.20308 1.20220 1.21993 0.96937 0.98241 0.89635 1.22250 1.02182 0.96649 0.97544 0.91883 0.92054 0.91734 0.92466 0.88785 0.92522 0.88578 0.93142 0.89056 0.89873 0.91057 0.91393 0.90888 0.95690 0.92089 0.96334 0.96580 0.95775 0.92948 0.95806 0.89559 0.90805 0.92147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 8.91 37.16 0.33 -0.93 16 2 C 0.04 0.41 2.24 -67.60 -0.15 0.26 16 3 H 0.05 0.62 6.63 -51.92 -0.34 0.28 16 4 C 0.07 0.67 6.29 37.21 0.23 0.90 16 5 O -0.39 -4.44 10.83 -35.23 -0.38 -4.82 16 6 C 0.06 0.63 7.01 37.21 0.26 0.89 16 7 C 0.01 0.11 4.86 -3.72 -0.02 0.10 16 8 N -0.53 -5.79 4.53 -218.26 -0.99 -6.78 16 9 C 0.08 0.99 1.99 -67.59 -0.13 0.85 16 10 C -0.11 -1.31 5.25 -26.66 -0.14 -1.45 16 11 C 0.06 0.82 5.46 -3.84 -0.02 0.80 16 12 N -0.54 -9.74 4.66 -234.68 -1.09 -10.83 16 13 C 0.06 1.35 4.90 -3.82 -0.02 1.33 16 14 C 0.03 0.75 4.90 -27.89 -0.14 0.61 16 15 C -0.52 -14.91 9.11 -34.44 -0.31 -15.22 16 16 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 17 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 18 N -0.89 -27.00 13.29 55.43 0.74 -26.26 16 19 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 C 0.06 1.03 5.29 -3.84 -0.02 1.01 16 24 C -0.15 -2.05 4.68 -26.65 -0.12 -2.18 16 25 H 0.06 0.60 6.26 -51.93 -0.33 0.27 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.05 0.62 6.37 -51.93 -0.33 0.29 16 33 H 0.09 0.96 6.18 -51.93 -0.32 0.64 16 34 H 0.08 1.01 5.99 -51.93 -0.31 0.70 16 35 H 0.07 0.92 6.27 -51.93 -0.33 0.60 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 1.04 8.02 -51.93 -0.42 0.63 16 38 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.06 1.28 7.99 -51.93 -0.41 0.86 16 40 H 0.02 0.39 8.12 -51.93 -0.42 -0.03 16 41 H 0.02 0.44 6.43 -51.92 -0.33 0.11 16 42 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 44 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.09 1.68 6.21 -51.93 -0.32 1.36 16 46 H 0.07 1.11 6.31 -51.93 -0.33 0.79 16 47 H 0.06 0.80 6.71 -51.93 -0.35 0.45 16 LS Contribution 345.46 15.07 5.21 5.21 Total: -1.00 -30.32 345.46 -10.20 -40.52 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -8.31 Total: -2.31 kcal Atomic # 6 Polarization: -11.09 SS G_CDS: -0.35 Total: -11.44 kcal Atomic # 7 Polarization: -42.53 SS G_CDS: -1.34 Total: -43.87 kcal Atomic # 8 Polarization: -4.44 SS G_CDS: -0.38 Total: -4.82 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.32 -10.20 -40.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576777943.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.153 kcal (2) G-P(sol) polarization free energy of solvation -30.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds