Wall clock time and date at job start Tue Mar 31 2020 05:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47306 * 2 1 4 4 N 1.46498 * 109.46951 * 119.99825 * 2 1 3 5 5 C 1.46504 * 120.00095 * 299.99821 * 4 2 1 6 6 C 1.34782 * 120.00445 * 119.99914 * 4 2 1 7 7 O 1.21274 * 119.99626 * 0.02562 * 6 4 2 8 8 C 1.50700 * 120.00369 * 179.97438 * 6 4 2 9 9 H 1.09002 * 109.46730 * 33.92027 * 8 6 4 10 10 C 1.52992 * 109.47222 * 273.92332 * 8 6 4 11 11 N 1.46899 * 109.47160 * 153.92045 * 8 6 4 12 12 C 1.46845 * 110.99790 * 306.01406 * 11 8 6 13 13 C 1.53034 * 109.52336 * 185.83835 * 12 11 8 14 14 C 1.53118 * 109.28188 * 300.82276 * 13 12 11 15 15 C 1.50694 * 109.52786 * 177.55582 * 14 13 12 16 16 H 1.07999 * 120.00230 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00191 * 179.97438 * 15 14 13 18 18 N 1.31521 * 120.00152 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99989 * 0.02562 * 17 15 14 20 20 H 1.48511 * 109.47167 * 89.99785 * 19 17 15 21 21 H 1.48503 * 109.47197 * 209.99531 * 19 17 15 22 22 H 1.48499 * 109.47067 * 329.99799 * 19 17 15 23 23 C 1.53117 * 109.15826 * 57.64874 * 14 13 12 24 24 C 1.46848 * 110.99947 * 70.22497 * 11 8 6 25 25 H 1.09000 * 109.46685 * 60.00203 * 1 2 3 26 26 H 1.09002 * 109.47355 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47271 * 300.00444 * 1 2 3 28 28 H 1.09000 * 109.47620 * 239.99856 * 2 1 3 29 29 H 1.09004 * 109.47057 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47083 * 299.99553 * 3 2 1 31 31 H 1.08994 * 109.47318 * 59.99585 * 3 2 1 32 32 H 1.08997 * 109.47320 * 270.00216 * 5 4 2 33 33 H 1.09001 * 109.47047 * 30.00240 * 5 4 2 34 34 H 1.09004 * 109.47096 * 149.99719 * 5 4 2 35 35 H 1.09002 * 109.47019 * 299.99518 * 10 8 6 36 36 H 1.09004 * 109.47967 * 59.99827 * 10 8 6 37 37 H 1.08997 * 109.47335 * 180.02562 * 10 8 6 38 38 H 1.09006 * 109.46318 * 65.82318 * 12 11 8 39 39 H 1.08998 * 109.45822 * 305.85214 * 12 11 8 40 40 H 1.09001 * 109.50761 * 180.87771 * 13 12 11 41 41 H 1.09004 * 109.50334 * 60.76103 * 13 12 11 42 42 H 1.09004 * 109.52137 * 297.74876 * 14 13 12 43 43 H 0.97000 * 119.99993 * 180.02562 * 18 17 15 44 44 H 1.09000 * 109.50523 * 62.29251 * 23 14 13 45 45 H 1.09007 * 109.50817 * 182.40571 * 23 14 13 46 46 H 1.09000 * 109.46043 * 294.17437 * 24 11 8 47 47 H 1.08999 * 109.46279 * 54.14540 * 24 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 1.6643 -0.1900 2.5268 6 6 2.7931 -1.7864 1.0727 7 8 3.0865 -2.2006 -0.0288 8 6 3.2959 -2.4965 2.3032 9 1 2.5469 -2.4301 3.0924 10 6 4.5944 -1.8401 2.7759 11 7 3.5483 -3.9082 1.9851 12 6 2.3595 -4.5350 1.3933 13 6 2.6090 -6.0337 1.2102 14 6 3.8229 -6.2365 0.2992 15 6 4.1102 -7.7096 0.1634 16 1 3.4895 -8.4303 0.6749 17 6 5.1650 -8.1374 -0.6146 18 7 5.4154 -9.4231 -0.7336 19 14 6.2384 -6.8910 -1.5000 20 1 7.3693 -6.4988 -0.6210 21 1 6.7685 -7.4933 -2.7496 22 1 5.4307 -5.6902 -1.8330 23 6 5.0359 -5.5332 0.9144 24 6 4.7161 -4.0490 1.1061 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 2.4156 0.5275 2.8568 33 1 0.6903 0.2975 2.4844 34 1 1.6236 -1.0225 3.2292 35 1 5.3434 -1.9065 1.9867 36 1 4.4073 -0.7925 3.0120 37 1 4.9583 -2.3539 3.6657 38 1 2.1534 -4.0801 0.4244 39 1 1.5045 -4.3871 2.0530 40 1 1.7323 -6.4959 0.7565 41 1 2.8016 -6.4918 2.1804 42 1 3.6158 -5.8127 -0.6835 43 1 6.1577 -9.7240 -1.2807 44 1 5.2667 -5.9833 1.8799 45 1 5.8933 -5.6377 0.2494 46 1 4.4990 -3.5964 0.1385 47 1 5.5727 -3.5481 1.5571 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581031587.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:22 Heat of formation + Delta-G solvation = -25.046415 kcal Electronic energy + Delta-G solvation = -24233.276360 eV Core-core repulsion = 21030.356151 eV Total energy + Delta-G solvation = -3202.920209 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.68845 -38.18593 -36.33223 -34.55666 -32.73803 -31.76508 -30.33526 -29.37385 -27.50315 -27.14267 -25.85991 -24.16920 -22.28002 -21.85488 -20.46000 -19.07451 -18.72807 -17.39591 -16.61461 -16.40988 -15.54742 -15.50260 -14.51746 -14.45765 -14.15410 -13.85109 -13.73044 -13.35446 -13.29727 -12.90535 -12.73255 -12.69706 -12.45867 -12.40679 -12.22619 -12.14519 -11.94112 -11.56866 -11.48641 -11.30591 -11.08946 -10.98704 -10.74180 -10.37477 -9.97865 -9.96540 -9.74434 -9.47550 -8.94190 -8.80841 -8.77918 -8.39774 -7.71651 -5.95950 -3.93393 2.61060 2.85418 3.36963 3.47660 3.53838 4.17926 4.42422 4.53327 4.74267 4.75678 4.79676 4.92899 5.00177 5.11416 5.21098 5.26553 5.33700 5.36241 5.43381 5.45971 5.50468 5.66159 5.68660 5.75907 5.85555 5.90965 5.94878 6.03478 6.07450 6.21751 6.26075 6.37948 6.41523 6.56251 6.66666 6.87742 6.95233 7.04941 7.25261 7.34201 7.47518 7.59572 7.78056 7.91670 8.19670 8.65768 9.08657 9.68204 11.17596 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025933 B = 0.004611 C = 0.004534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.460803 B = 6071.055721 C = 6174.183588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.126 3.874 3 C -0.158 4.158 4 N -0.615 5.615 5 C 0.075 3.925 6 C 0.486 3.514 7 O -0.527 6.527 8 C 0.062 3.938 9 H 0.101 0.899 10 C -0.143 4.143 11 N -0.504 5.504 12 C 0.045 3.955 13 C -0.092 4.092 14 C 0.014 3.986 15 C -0.508 4.508 16 H 0.072 0.928 17 C 0.068 3.932 18 N -0.906 5.906 19 Si 0.884 3.116 20 H -0.279 1.279 21 H -0.299 1.299 22 H -0.264 1.264 23 C -0.113 4.113 24 C 0.034 3.966 25 H 0.066 0.934 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.100 0.900 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.059 0.941 37 H 0.078 0.922 38 H 0.045 0.955 39 H 0.056 0.944 40 H 0.056 0.944 41 H 0.061 0.939 42 H 0.023 0.977 43 H 0.262 0.738 44 H 0.064 0.936 45 H 0.046 0.954 46 H 0.062 0.938 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.999 23.667 7.438 26.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.022 3.978 3 C -0.216 4.216 4 N -0.351 5.351 5 C -0.068 4.068 6 C 0.274 3.726 7 O -0.402 6.402 8 C -0.050 4.050 9 H 0.118 0.882 10 C -0.200 4.200 11 N -0.227 5.227 12 C -0.083 4.083 13 C -0.130 4.130 14 C -0.005 4.005 15 C -0.546 4.546 16 H 0.090 0.910 17 C -0.132 4.132 18 N -0.545 5.545 19 Si 0.715 3.285 20 H -0.206 1.206 21 H -0.227 1.227 22 H -0.189 1.189 23 C -0.151 4.151 24 C -0.093 4.093 25 H 0.085 0.915 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.118 0.882 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.097 0.903 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.041 0.959 43 H 0.071 0.929 44 H 0.083 0.917 45 H 0.064 0.936 46 H 0.080 0.920 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.613 23.033 7.199 25.304 hybrid contribution 0.411 1.109 -1.163 1.659 sum -7.202 24.142 6.036 25.906 Atomic orbital electron populations 1.22131 0.95061 1.02525 1.02116 1.21045 0.93996 0.93066 0.89674 1.22111 1.01650 0.95710 1.02125 1.48223 1.51494 1.28609 1.06739 1.21820 1.00901 1.00168 0.83957 1.22433 0.77660 0.79795 0.92746 1.90680 1.56929 1.64313 1.28283 1.22038 0.99067 0.89609 0.94313 0.88178 1.21843 0.95876 0.99567 1.02728 1.62507 1.05759 1.08672 1.45803 1.22340 0.90893 0.97395 0.97628 1.21444 0.99206 0.91748 1.00596 1.19164 0.90958 0.96292 0.94103 1.21088 1.14035 0.90155 1.29275 0.90955 1.25003 0.97269 0.94907 0.96042 1.69911 1.30286 1.13748 1.40523 0.86880 0.81042 0.81996 0.78584 1.20626 1.22713 1.18910 1.21973 0.99645 0.92394 1.01062 1.22554 0.91525 0.99061 0.96153 0.91510 0.92172 0.92398 0.88226 0.92385 0.91581 0.92463 0.92622 0.91079 0.90645 0.91492 0.92236 0.90328 0.93679 0.92592 0.92543 0.92010 0.95902 0.92862 0.91706 0.93556 0.91994 0.92023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.33 9.17 37.16 0.34 -0.99 16 2 C 0.13 1.28 3.25 -67.93 -0.22 1.06 16 3 C -0.16 -1.25 9.19 37.16 0.34 -0.91 16 4 N -0.62 -6.67 2.76 -173.93 -0.48 -7.15 16 5 C 0.07 0.52 9.10 59.85 0.54 1.07 16 6 C 0.49 7.04 5.93 -10.98 -0.07 6.98 16 7 O -0.53 -9.96 11.66 5.56 0.06 -9.89 16 8 C 0.06 0.83 2.29 -68.87 -0.16 0.68 16 9 H 0.10 1.10 6.01 -51.93 -0.31 0.79 16 10 C -0.14 -1.61 8.59 37.15 0.32 -1.29 16 11 N -0.50 -8.79 4.73 -228.09 -1.08 -9.87 16 12 C 0.04 0.83 4.90 -3.84 -0.02 0.81 16 13 C -0.09 -1.98 5.32 -26.65 -0.14 -2.12 16 14 C 0.01 0.35 1.75 -91.65 -0.16 0.19 16 15 C -0.51 -14.92 9.14 -34.44 -0.31 -15.24 16 16 H 0.07 2.28 7.99 -52.49 -0.42 1.86 16 17 C 0.07 2.06 5.45 -17.82 -0.10 1.97 16 18 N -0.91 -28.76 13.96 55.43 0.77 -27.99 16 19 Si 0.88 23.33 24.37 -169.99 -4.14 19.19 16 20 H -0.28 -7.12 6.89 56.52 0.39 -6.73 16 21 H -0.30 -7.87 7.11 56.52 0.40 -7.47 16 22 H -0.26 -6.90 6.53 56.52 0.37 -6.53 16 23 C -0.11 -2.63 4.84 -26.65 -0.13 -2.76 16 24 C 0.03 0.67 4.63 -3.84 -0.02 0.66 16 25 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.39 6.66 -51.93 -0.35 0.04 16 28 H 0.10 1.31 6.90 -51.93 -0.36 0.95 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.38 7.67 -51.93 -0.40 -0.02 16 32 H 0.06 0.33 8.12 -51.93 -0.42 -0.09 16 33 H 0.07 0.39 6.43 -51.93 -0.33 0.06 16 34 H 0.08 0.49 5.83 -51.93 -0.30 0.18 16 35 H 0.07 0.87 6.19 -51.93 -0.32 0.55 16 36 H 0.06 0.52 7.90 -51.93 -0.41 0.11 16 37 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.05 0.92 6.05 -51.93 -0.31 0.60 16 39 H 0.06 0.89 8.12 -51.93 -0.42 0.47 16 40 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 41 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 42 H 0.02 0.62 7.19 -51.93 -0.37 0.24 16 43 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 44 H 0.06 1.52 8.14 -51.93 -0.42 1.09 16 45 H 0.05 1.14 3.39 -51.92 -0.18 0.96 16 46 H 0.06 1.36 5.65 -51.93 -0.29 1.07 16 47 H 0.06 1.09 5.82 -51.93 -0.30 0.79 16 LS Contribution 340.92 15.07 5.14 5.14 Total: -1.00 -34.07 340.92 -7.57 -41.64 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -8.07 Total: -1.16 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: 0.22 Total: -9.91 kcal Atomic # 7 Polarization: -44.22 SS G_CDS: -0.78 Total: -45.00 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.06 Total: -9.89 kcal Atomic # 14 Polarization: 23.33 SS G_CDS: -4.14 Total: 19.19 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.07 -7.57 -41.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581031587.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.592 kcal (2) G-P(sol) polarization free energy of solvation -34.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds