Wall clock time and date at job start Tue Mar 31 2020 05:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.46738 * 2 1 4 4 C 1.52996 * 109.47119 * 239.99899 * 2 1 3 5 5 C 1.50702 * 109.47322 * 175.99797 * 4 2 1 6 6 H 1.08000 * 119.99614 * 359.97438 * 5 4 2 7 7 C 1.37876 * 119.99883 * 180.02562 * 5 4 2 8 8 N 1.31511 * 120.00207 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99741 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47306 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47167 * 119.99774 * 9 7 5 12 12 H 1.48505 * 109.47171 * 239.99828 * 9 7 5 13 13 N 1.46898 * 109.47170 * 119.99866 * 2 1 3 14 14 C 1.46847 * 111.00204 * 289.38809 * 13 2 1 15 15 C 1.53041 * 109.52474 * 185.83578 * 14 13 2 16 16 C 1.53114 * 109.28200 * 300.82655 * 15 14 13 17 17 C 1.52995 * 109.52480 * 177.56093 * 16 15 14 18 18 C 1.50703 * 109.47547 * 174.99674 * 17 16 15 19 19 O 1.21280 * 119.99660 * 359.97438 * 18 17 16 20 20 N 1.34772 * 120.00072 * 179.97438 * 18 17 16 21 21 C 1.46500 * 119.99769 * 180.02562 * 20 18 17 22 22 C 1.46499 * 120.00044 * 359.72451 * 20 18 17 23 23 C 1.53114 * 109.16533 * 57.65081 * 16 15 14 24 24 C 1.46852 * 111.00122 * 53.59754 * 13 2 1 25 25 H 1.09004 * 109.46920 * 299.99869 * 1 2 3 26 26 H 1.08994 * 109.47340 * 60.00401 * 1 2 3 27 27 H 1.09004 * 109.47141 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47131 * 295.99852 * 4 2 1 29 29 H 1.08998 * 109.47532 * 55.99289 * 4 2 1 30 30 H 0.97000 * 119.99924 * 179.97438 * 8 7 5 31 31 H 1.09004 * 109.46270 * 65.82593 * 14 13 2 32 32 H 1.08993 * 109.45259 * 305.85374 * 14 13 2 33 33 H 1.08997 * 109.49905 * 180.87651 * 15 14 13 34 34 H 1.09005 * 109.49751 * 60.76387 * 15 14 13 35 35 H 1.09002 * 109.51828 * 297.68322 * 16 15 14 36 36 H 1.09005 * 109.47521 * 54.99326 * 17 16 15 37 37 H 1.09009 * 109.46814 * 294.99562 * 17 16 15 38 38 H 1.08994 * 109.47153 * 179.72912 * 21 20 18 39 39 H 1.09005 * 109.46992 * 299.72389 * 21 20 18 40 40 H 1.09000 * 109.47538 * 59.72582 * 21 20 18 41 41 H 1.09000 * 109.47320 * 270.27451 * 22 20 18 42 42 H 1.09000 * 109.47183 * 30.27987 * 22 20 18 43 43 H 1.09003 * 109.46670 * 150.26960 * 22 20 18 44 44 H 1.09000 * 109.50722 * 62.28457 * 23 16 15 45 45 H 1.08993 * 109.50911 * 182.41088 * 23 16 15 46 46 H 1.09000 * 109.46458 * 294.17760 * 24 13 2 47 47 H 1.09001 * 109.45857 * 54.14405 * 24 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5437 -0.6360 -1.2998 6 1 4.0818 -0.1187 -0.5193 7 6 4.2324 -1.2175 -2.3432 8 7 3.5772 -1.8469 -3.2939 9 14 6.0963 -1.1111 -2.4063 10 1 6.5892 -0.3546 -1.2273 11 1 6.6710 -2.4804 -2.3920 12 1 6.5106 -0.4134 -3.6500 13 7 2.0197 -0.6925 1.1994 14 6 1.7660 0.1035 2.4071 15 6 2.4156 -0.5771 3.6141 16 6 1.8328 -1.9838 3.7756 17 6 2.5220 -2.6918 4.9438 18 6 1.8648 -4.0272 5.1801 19 8 0.9363 -4.3779 4.4831 20 7 2.3089 -4.8317 6.1660 21 6 1.6704 -6.1301 6.3953 22 6 3.4343 -4.4107 7.0040 23 6 2.0677 -2.7762 2.4866 24 6 1.4280 -2.0318 1.3123 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.7364 -1.7675 -1.2140 29 1 1.6193 -0.2506 -2.1378 30 1 4.0617 -2.2557 -4.0281 31 1 0.6913 0.1835 2.5703 32 1 2.1893 1.0999 2.2806 33 1 2.2139 0.0058 4.5127 34 1 3.4923 -0.6450 3.4577 35 1 0.7629 -1.9144 3.9718 36 1 2.4350 -2.0800 5.8418 37 1 3.5754 -2.8420 4.7071 38 1 2.1646 -6.6367 7.2242 39 1 0.6181 -5.9799 6.6369 40 1 1.7531 -6.7398 5.4955 41 1 4.3684 -4.7452 6.5528 42 1 3.4393 -3.3238 7.0864 43 1 3.3324 -4.8497 7.9965 44 1 3.1388 -2.8787 2.3124 45 1 1.6173 -3.7643 2.5797 46 1 0.3549 -1.9418 1.4806 47 1 1.6058 -2.5861 0.3908 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000582731289.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:33 Heat of formation + Delta-G solvation = -43.726919 kcal Electronic energy + Delta-G solvation = -23414.752855 eV Core-core repulsion = 20211.022598 eV Total energy + Delta-G solvation = -3203.730257 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.18405 -38.66547 -35.83717 -35.12438 -32.62681 -30.98401 -30.26591 -28.77930 -27.48965 -27.15817 -25.69703 -23.28033 -22.77244 -22.07333 -19.74176 -19.18953 -18.53026 -16.97741 -16.19440 -16.10797 -16.01642 -15.32928 -14.48992 -14.36946 -14.16167 -13.92687 -13.65263 -13.28594 -13.04212 -12.96409 -12.83418 -12.73083 -12.36455 -12.22585 -11.92158 -11.83691 -11.65147 -11.45996 -11.24957 -10.96431 -10.74380 -10.50057 -10.44707 -10.28698 -10.19470 -9.90315 -9.78084 -9.46425 -9.05612 -8.87956 -8.86080 -8.19022 -7.30048 -5.81822 -3.78881 2.58037 2.83822 3.41942 3.49088 3.54593 4.41630 4.61628 4.68366 4.75113 4.88438 4.96057 5.01505 5.06442 5.26274 5.34247 5.35011 5.54365 5.55227 5.56416 5.59230 5.70134 5.82365 5.89787 5.92322 6.00089 6.06568 6.12628 6.20656 6.24023 6.29262 6.39130 6.43118 6.56818 6.63119 6.78130 6.83960 6.91791 7.11076 7.16587 7.66179 7.81341 8.06253 8.10699 8.16228 8.21679 8.67230 9.27396 9.82209 11.30417 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017458 B = 0.004216 C = 0.003825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.455718 B = 6639.465590 C = 7319.360617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.087 3.913 3 H 0.067 0.933 4 C 0.029 3.971 5 C -0.485 4.485 6 H 0.061 0.939 7 C 0.049 3.951 8 N -0.905 5.905 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.288 1.288 12 H -0.288 1.288 13 N -0.510 5.510 14 C 0.055 3.945 15 C -0.109 4.109 16 C -0.071 4.071 17 C -0.133 4.133 18 C 0.511 3.489 19 O -0.528 6.528 20 N -0.630 5.630 21 C 0.090 3.910 22 C 0.078 3.922 23 C -0.113 4.113 24 C 0.060 3.940 25 H 0.038 0.962 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.019 0.981 29 H 0.017 0.983 30 H 0.256 0.744 31 H 0.022 0.978 32 H 0.067 0.933 33 H 0.056 0.944 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.071 0.929 39 H 0.058 0.942 40 H 0.060 0.940 41 H 0.057 0.943 42 H 0.074 0.926 43 H 0.070 0.930 44 H 0.064 0.936 45 H 0.075 0.925 46 H 0.022 0.978 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.288 -3.097 22.212 22.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.021 4.021 3 H 0.085 0.915 4 C -0.008 4.008 5 C -0.524 4.524 6 H 0.079 0.921 7 C -0.150 4.150 8 N -0.546 5.546 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.215 1.215 13 N -0.233 5.233 14 C -0.074 4.074 15 C -0.147 4.147 16 C -0.090 4.090 17 C -0.173 4.173 18 C 0.300 3.700 19 O -0.404 6.404 20 N -0.366 5.366 21 C -0.053 4.053 22 C -0.065 4.065 23 C -0.150 4.150 24 C -0.068 4.068 25 H 0.057 0.943 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.037 0.963 29 H 0.035 0.965 30 H 0.065 0.935 31 H 0.040 0.960 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.107 0.893 37 H 0.112 0.888 38 H 0.090 0.910 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.093 0.907 43 H 0.088 0.912 44 H 0.083 0.917 45 H 0.093 0.907 46 H 0.040 0.960 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.243 -3.437 21.641 22.027 hybrid contribution 0.274 0.006 0.091 0.288 sum -1.969 -3.431 21.732 22.090 Atomic orbital electron populations 1.22520 0.99927 1.01353 1.00441 1.21894 0.89959 0.98184 0.92089 0.91489 1.19200 0.96346 0.95385 0.89834 1.21218 0.91705 1.32946 1.06512 0.92092 1.25006 0.97895 0.96042 0.96045 1.69978 1.34969 1.37539 1.12111 0.86594 0.86680 0.77457 0.77581 1.19814 1.21409 1.21485 1.62058 1.58405 1.01868 1.01002 1.22023 0.97241 0.97115 0.91012 1.21625 1.01269 0.94739 0.97040 1.20976 0.99551 0.94629 0.93839 1.21807 1.01533 0.93192 1.00746 1.20913 0.83476 0.86535 0.79049 1.90691 1.28771 1.75049 1.45851 1.47871 1.34874 1.19335 1.34527 1.21582 0.98014 0.84188 1.01505 1.21843 0.88803 1.01268 0.94611 1.21728 1.01556 0.98857 0.92894 1.22034 0.94946 0.90724 0.99108 0.94288 0.92725 0.92817 0.96276 0.96495 0.93473 0.95971 0.91447 0.92505 0.91006 0.91198 0.89300 0.88752 0.90988 0.92305 0.92117 0.92433 0.90736 0.91164 0.91682 0.90668 0.95973 0.89710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.37 8.44 37.16 0.31 -3.06 16 2 C 0.09 1.84 2.26 -67.72 -0.15 1.69 16 3 H 0.07 1.43 7.97 -51.93 -0.41 1.02 16 4 C 0.03 0.77 4.37 -27.88 -0.12 0.65 16 5 C -0.49 -13.87 8.81 -34.44 -0.30 -14.17 16 6 H 0.06 1.74 7.74 -52.49 -0.41 1.33 16 7 C 0.05 1.44 5.46 -17.82 -0.10 1.34 16 8 N -0.90 -27.83 13.29 55.43 0.74 -27.10 16 9 Si 0.89 22.39 29.54 -169.99 -5.02 17.37 16 10 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 12 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 13 N -0.51 -10.06 4.29 -226.69 -0.97 -11.03 16 14 C 0.05 0.88 5.14 -3.83 -0.02 0.86 16 15 C -0.11 -1.46 5.38 -26.65 -0.14 -1.61 16 16 C -0.07 -0.99 1.90 -90.50 -0.17 -1.16 16 17 C -0.13 -1.44 3.73 -27.88 -0.10 -1.55 16 18 C 0.51 6.50 7.41 -10.99 -0.08 6.42 16 19 O -0.53 -8.80 13.99 5.56 0.08 -8.72 16 20 N -0.63 -6.12 3.27 -189.52 -0.62 -6.74 16 21 C 0.09 0.76 10.16 59.85 0.61 1.37 16 22 C 0.08 0.46 10.21 59.85 0.61 1.07 16 23 C -0.11 -1.92 5.09 -26.65 -0.14 -2.05 16 24 C 0.06 1.15 4.53 -3.83 -0.02 1.14 16 25 H 0.04 0.64 6.84 -51.93 -0.35 0.28 16 26 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.05 1.00 6.45 -51.93 -0.34 0.67 16 28 H 0.02 0.53 6.28 -51.93 -0.33 0.21 16 29 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 31 H 0.02 0.35 6.90 -51.93 -0.36 -0.01 16 32 H 0.07 1.06 8.01 -51.93 -0.42 0.64 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.07 1.05 7.95 -51.93 -0.41 0.64 16 36 H 0.09 0.74 7.41 -51.93 -0.38 0.35 16 37 H 0.09 0.94 8.10 -51.92 -0.42 0.52 16 38 H 0.07 0.39 7.79 -51.93 -0.40 -0.01 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 42 H 0.07 0.36 6.45 -51.93 -0.34 0.03 16 43 H 0.07 0.28 7.92 -51.93 -0.41 -0.13 16 44 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 45 H 0.07 1.35 6.04 -51.93 -0.31 1.03 16 46 H 0.02 0.42 6.57 -51.93 -0.34 0.08 16 47 H 0.08 1.89 6.17 -51.93 -0.32 1.56 16 LS Contribution 356.64 15.07 5.37 5.37 Total: -1.00 -33.55 356.64 -8.71 -42.26 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -8.47 Total: -2.35 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: 0.18 Total: -9.06 kcal Atomic # 7 Polarization: -44.02 SS G_CDS: -0.86 Total: -44.87 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: 0.08 Total: -8.72 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.55 -8.71 -42.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582731289.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.465 kcal (2) G-P(sol) polarization free energy of solvation -33.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds