Wall clock time and date at job start Tue Mar 31 2020 05:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46990 * 2 1 4 4 N 1.46897 * 109.47335 * 239.99841 * 2 1 3 5 5 C 1.46903 * 111.00165 * 87.11933 * 4 2 1 6 6 C 1.53033 * 109.46316 * 201.98889 * 5 4 2 7 7 C 1.53188 * 109.31700 * 178.60412 * 6 5 4 8 8 N 1.46930 * 108.76266 * 54.65645 * 7 6 5 9 9 C 1.36931 * 120.62990 * 126.41191 * 8 7 6 10 10 H 1.08004 * 119.99864 * 325.53503 * 9 8 7 11 11 C 1.38817 * 120.00022 * 145.54181 * 9 8 7 12 12 N 1.31614 * 119.99925 * 345.68667 * 11 9 8 13 13 Si 1.86799 * 119.99889 * 165.69216 * 11 9 8 14 14 H 1.48501 * 109.47339 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47112 * 119.99690 * 13 11 9 16 16 H 1.48495 * 109.47105 * 239.99439 * 13 11 9 17 17 C 1.46925 * 118.73927 * 306.38409 * 8 7 6 18 18 C 1.53044 * 109.45393 * 81.93811 * 5 4 2 19 19 C 1.53002 * 109.47039 * 119.99634 * 2 1 3 20 20 C 1.53006 * 109.98871 * 178.91371 * 19 2 1 21 21 C 1.54099 * 109.88112 * 299.99703 * 19 2 1 22 22 C 1.54811 * 104.18339 * 121.45361 * 21 19 2 23 23 C 1.54995 * 102.09528 * 20.88393 * 22 21 19 24 24 O 1.44123 * 109.85723 * 57.89048 * 19 2 1 25 25 H 1.08998 * 109.46931 * 185.19539 * 1 2 3 26 26 H 1.09006 * 109.47013 * 305.18789 * 1 2 3 27 27 H 1.08998 * 109.47286 * 65.19093 * 1 2 3 28 28 H 1.00904 * 110.99620 * 323.17497 * 4 2 1 29 29 H 1.09003 * 109.46050 * 321.96732 * 5 4 2 30 30 H 1.09006 * 109.50200 * 298.57318 * 6 5 4 31 31 H 1.09006 * 109.49762 * 58.66274 * 6 5 4 32 32 H 1.09003 * 109.59682 * 294.87145 * 7 6 5 33 33 H 1.08996 * 109.70934 * 174.50781 * 7 6 5 34 34 H 0.97000 * 119.99999 * 180.02562 * 12 11 9 35 35 H 1.09000 * 109.59104 * 293.82670 * 17 8 7 36 36 H 1.08995 * 109.58797 * 173.39382 * 17 8 7 37 37 H 1.09001 * 109.49846 * 301.33448 * 18 5 4 38 38 H 1.08993 * 109.49817 * 61.43565 * 18 5 4 39 39 H 1.09001 * 109.47282 * 180.38344 * 20 19 2 40 40 H 1.08995 * 109.47343 * 300.38961 * 20 19 2 41 41 H 1.09007 * 109.46866 * 60.38825 * 20 19 2 42 42 H 1.09002 * 110.48800 * 2.78032 * 21 19 2 43 43 H 1.08994 * 110.48878 * 240.13571 * 21 19 2 44 44 H 1.08999 * 110.91012 * 262.68112 * 22 21 19 45 45 H 1.09000 * 110.90507 * 139.08136 * 22 21 19 46 46 H 1.09003 * 110.61888 * 81.47348 * 23 22 21 47 47 H 1.08997 * 110.61698 * 204.31427 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.1303 0.2340 -2.3340 6 6 2.0990 -0.5574 -3.6435 7 6 2.1794 0.4144 -4.8249 8 7 3.3687 1.2612 -4.6602 9 6 4.2962 1.3639 -5.6623 10 1 4.5105 0.5110 -6.2893 11 6 4.9612 2.5642 -5.8723 12 7 4.5159 3.6697 -5.3139 13 14 6.4880 2.6104 -6.9475 14 1 6.7793 1.2447 -7.4527 15 1 6.2579 3.5245 -8.0950 16 1 7.6410 3.0988 -6.1492 17 6 3.5436 1.9963 -3.4002 18 6 3.4476 1.0067 -2.2347 19 6 2.0400 -0.7212 1.2493 20 6 3.5698 -0.7518 1.2477 21 6 1.5316 -0.0020 2.5138 22 6 0.7320 -1.0889 3.2728 23 6 1.3098 -2.3958 2.6724 24 8 1.5239 -2.0664 1.2830 25 1 -0.3633 -1.0234 0.0931 26 1 -0.3633 0.5922 0.8399 27 1 -0.3634 0.4312 -0.9328 28 1 1.4293 -1.4776 -1.4299 29 1 1.2957 0.9348 -2.3132 30 1 2.9476 -1.2409 -3.6759 31 1 1.1710 -1.1261 -3.7028 32 1 1.2862 1.0388 -4.8460 33 1 2.2558 -0.1456 -5.7569 34 1 4.9803 4.5085 -5.4609 35 1 2.7616 2.7498 -3.3050 36 1 4.5212 2.4781 -3.3908 37 1 3.4795 1.5516 -1.2912 38 1 4.2833 0.3085 -2.2805 39 1 3.9237 -1.2730 2.1372 40 1 3.9219 -1.2724 0.3573 41 1 3.9535 0.2685 1.2477 42 1 0.8821 0.8308 2.2440 43 1 2.3696 0.3466 3.1174 44 1 -0.3345 -1.0036 3.0648 45 1 0.9235 -1.0353 4.3445 46 1 2.2521 -2.6560 3.1547 47 1 0.5932 -3.2115 2.7675 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585725004.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:55 Heat of formation + Delta-G solvation = -35.386544 kcal Electronic energy + Delta-G solvation = -23855.792527 eV Core-core repulsion = 20652.423936 eV Total energy + Delta-G solvation = -3203.368591 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.13159 -37.93461 -35.51826 -33.00876 -32.13350 -31.03945 -30.06688 -29.71680 -28.04102 -26.00050 -24.57712 -22.98315 -22.07644 -21.88880 -20.96914 -19.63948 -18.97483 -16.74733 -16.43178 -15.95219 -15.27702 -14.73682 -14.52781 -14.37359 -14.07886 -13.89485 -13.46798 -13.37480 -13.10084 -12.74555 -12.54155 -12.37561 -12.15590 -11.92947 -11.80166 -11.60749 -11.38517 -11.33716 -11.07320 -10.98435 -10.81886 -10.71729 -10.69653 -10.46311 -10.14902 -10.11427 -9.90088 -9.64967 -9.44415 -9.39052 -8.43981 -7.96115 -6.51951 -5.74503 -3.22901 3.39622 3.47397 3.50221 3.81275 4.35743 4.43414 4.53505 4.73700 4.78230 4.96059 5.05656 5.18544 5.34056 5.40595 5.43232 5.49735 5.52670 5.55532 5.60092 5.61906 5.72005 5.76852 5.78870 5.86858 5.93353 5.97915 6.02375 6.15318 6.22927 6.29207 6.43367 6.50734 6.55328 6.67978 6.72861 6.83203 6.87403 6.99947 7.08801 7.43195 7.52255 7.69006 7.81792 7.87005 8.54783 9.27824 9.89352 10.50655 11.33832 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.033855 B = 0.003708 C = 0.003608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.859669 B = 7549.239786 C = 7758.143495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.094 3.906 3 H 0.085 0.915 4 N -0.675 5.675 5 C 0.096 3.904 6 C -0.131 4.131 7 C 0.148 3.852 8 N -0.590 5.590 9 C -0.254 4.254 10 H 0.062 0.938 11 C 0.007 3.993 12 N -0.901 5.901 13 Si 0.901 3.099 14 H -0.277 1.277 15 H -0.290 1.290 16 H -0.289 1.289 17 C 0.175 3.825 18 C -0.123 4.123 19 C 0.117 3.883 20 C -0.152 4.152 21 C -0.151 4.151 22 C -0.154 4.154 23 C 0.045 3.955 24 O -0.359 6.359 25 H 0.063 0.937 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.339 0.661 29 H 0.033 0.967 30 H 0.066 0.934 31 H 0.045 0.955 32 H 0.014 0.986 33 H 0.054 0.946 34 H 0.252 0.748 35 H 0.015 0.985 36 H 0.076 0.924 37 H 0.042 0.958 38 H 0.060 0.940 39 H 0.044 0.956 40 H 0.080 0.920 41 H 0.059 0.941 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.073 0.927 45 H 0.074 0.926 46 H 0.056 0.944 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.869 -8.609 16.973 20.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.016 4.016 3 H 0.103 0.897 4 N -0.305 5.305 5 C -0.012 4.012 6 C -0.170 4.170 7 C 0.021 3.979 8 N -0.313 5.313 9 C -0.384 4.384 10 H 0.080 0.920 11 C -0.192 4.192 12 N -0.545 5.545 13 Si 0.730 3.270 14 H -0.202 1.202 15 H -0.217 1.217 16 H -0.216 1.216 17 C 0.049 3.951 18 C -0.163 4.163 19 C 0.077 3.923 20 C -0.210 4.210 21 C -0.189 4.189 22 C -0.191 4.191 23 C -0.032 4.032 24 O -0.278 6.278 25 H 0.082 0.918 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.157 0.843 29 H 0.051 0.949 30 H 0.084 0.916 31 H 0.064 0.936 32 H 0.032 0.968 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.033 0.967 36 H 0.095 0.905 37 H 0.061 0.939 38 H 0.079 0.921 39 H 0.063 0.937 40 H 0.099 0.901 41 H 0.078 0.922 42 H 0.097 0.903 43 H 0.094 0.906 44 H 0.092 0.908 45 H 0.093 0.907 46 H 0.074 0.926 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.163 -8.514 16.915 20.247 hybrid contribution -0.170 0.456 -0.444 0.659 sum -7.333 -8.058 16.471 19.749 Atomic orbital electron populations 1.22467 0.97316 1.02451 1.01593 1.21629 0.92557 0.97337 0.90108 0.89671 1.60612 1.55375 1.10600 1.03886 1.21466 0.97590 0.93119 0.89064 1.22166 1.00348 0.98803 0.95725 1.20872 0.90142 0.91963 0.94907 1.43975 1.20943 1.53086 1.13296 1.19170 1.14635 0.94358 1.10284 0.92040 1.25206 1.00173 0.95024 0.98779 1.70030 1.39307 0.97958 1.47165 0.86255 0.83159 0.77587 0.79959 1.20157 1.21712 1.21556 1.20691 1.00886 0.90851 0.82678 1.22200 0.96300 0.98935 0.98886 1.22201 0.93951 0.82306 0.93858 1.22083 0.94232 1.02122 1.02517 1.23089 1.00367 0.98992 0.96415 1.23099 1.00549 0.95365 1.00114 1.23467 0.99470 0.97010 0.83292 1.89014 1.85029 1.30268 1.23464 0.91777 0.92618 0.92726 0.84266 0.94946 0.91572 0.93628 0.96833 0.92762 0.93755 0.96687 0.90519 0.93947 0.92122 0.93656 0.90082 0.92187 0.90321 0.90647 0.90793 0.90682 0.92614 0.89577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.10 8.72 37.16 0.32 -1.78 16 2 C 0.09 1.22 1.68 -67.71 -0.11 1.11 16 3 H 0.09 1.19 6.89 -51.93 -0.36 0.83 16 4 N -0.67 -10.01 5.20 -99.69 -0.52 -10.53 16 5 C 0.10 1.67 2.28 -67.67 -0.15 1.52 16 6 C -0.13 -2.36 5.39 -26.62 -0.14 -2.50 16 7 C 0.15 3.21 6.52 -3.71 -0.02 3.18 16 8 N -0.59 -15.14 2.96 -172.32 -0.51 -15.65 16 9 C -0.25 -7.14 9.52 -15.06 -0.14 -7.28 16 10 H 0.06 1.71 7.87 -52.48 -0.41 1.29 16 11 C 0.01 0.21 4.94 -17.43 -0.09 0.12 16 12 N -0.90 -26.56 11.52 55.49 0.64 -25.92 16 13 Si 0.90 21.97 29.58 -169.99 -5.03 16.94 16 14 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 15 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 16 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 17 C 0.18 4.26 5.25 -3.71 -0.02 4.24 16 18 C -0.12 -2.43 5.54 -26.61 -0.15 -2.58 16 19 C 0.12 1.37 0.63 -90.04 -0.06 1.31 16 20 C -0.15 -1.88 8.45 37.16 0.31 -1.57 16 21 C -0.15 -1.42 5.83 -25.20 -0.15 -1.57 16 22 C -0.15 -1.24 7.15 -24.72 -0.18 -1.42 16 23 C 0.04 0.41 7.65 38.21 0.29 0.71 16 24 O -0.36 -4.47 9.98 -35.23 -0.35 -4.82 16 25 H 0.06 0.76 7.48 -51.93 -0.39 0.37 16 26 H 0.05 0.57 6.58 -51.93 -0.34 0.23 16 27 H 0.05 0.68 7.50 -51.93 -0.39 0.29 16 28 H 0.34 4.94 8.09 -39.29 -0.32 4.62 16 29 H 0.03 0.59 7.26 -51.93 -0.38 0.21 16 30 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 31 H 0.05 0.71 8.10 -51.93 -0.42 0.29 16 32 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.05 1.15 7.93 -51.93 -0.41 0.74 16 34 H 0.25 7.16 8.31 -40.82 -0.34 6.83 16 35 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.08 2.08 6.48 -51.93 -0.34 1.74 16 37 H 0.04 0.77 7.21 -51.93 -0.37 0.40 16 38 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.04 0.50 8.13 -51.93 -0.42 0.08 16 40 H 0.08 1.18 7.60 -51.93 -0.39 0.79 16 41 H 0.06 0.73 8.14 -51.92 -0.42 0.30 16 42 H 0.08 0.72 6.26 -51.93 -0.32 0.40 16 43 H 0.07 0.66 7.70 -51.93 -0.40 0.26 16 44 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 47 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 352.74 15.07 5.32 5.32 Total: -1.00 -29.62 352.74 -9.34 -38.96 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -8.61 Total: 2.21 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: -0.28 Total: -6.50 kcal Atomic # 7 Polarization: -51.71 SS G_CDS: -0.39 Total: -52.10 kcal Atomic # 8 Polarization: -4.47 SS G_CDS: -0.35 Total: -4.82 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.94 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.62 -9.34 -38.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585725004.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.575 kcal (2) G-P(sol) polarization free energy of solvation -29.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds