Wall clock time and date at job start Tue Mar 31 2020 05:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47062 * 2 1 4 4 N 1.46896 * 109.47558 * 119.99695 * 2 1 3 5 5 C 1.46898 * 111.00621 * 273.36349 * 4 2 1 6 6 C 1.53068 * 109.44069 * 106.93075 * 5 4 2 7 7 C 1.53194 * 109.29682 * 181.23907 * 6 5 4 8 8 N 1.46931 * 108.89081 * 305.58074 * 7 6 5 9 9 C 1.36935 * 120.63188 * 233.55172 * 8 7 6 10 10 H 1.08001 * 119.99591 * 151.62046 * 9 8 7 11 11 C 1.38809 * 119.99838 * 331.63099 * 9 8 7 12 12 N 1.31615 * 120.00174 * 342.91260 * 11 9 8 13 13 Si 1.86801 * 119.99886 * 162.92359 * 11 9 8 14 14 H 1.48506 * 109.47048 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47521 * 119.99432 * 13 11 9 16 16 H 1.48500 * 109.47029 * 239.99735 * 13 11 9 17 17 C 1.46925 * 118.73621 * 53.53696 * 8 7 6 18 18 C 1.53039 * 109.46114 * 227.14111 * 5 4 2 19 19 C 1.52997 * 109.47126 * 240.00448 * 2 1 3 20 20 C 1.52994 * 109.82760 * 185.56641 * 19 2 1 21 21 C 1.54383 * 109.83236 * 64.58145 * 19 2 1 22 22 C 1.55312 * 102.25266 * 219.13119 * 21 19 2 23 23 C 1.54947 * 100.94036 * 34.13663 * 22 21 19 24 24 O 1.43245 * 109.82858 * 306.44709 * 19 2 1 25 25 H 1.08998 * 109.46869 * 178.08782 * 1 2 3 26 26 H 1.09000 * 109.46628 * 298.08071 * 1 2 3 27 27 H 1.08996 * 109.47766 * 58.08178 * 1 2 3 28 28 H 1.00903 * 110.99834 * 37.32299 * 4 2 1 29 29 H 1.08996 * 109.45557 * 347.11319 * 5 4 2 30 30 H 1.09002 * 109.38910 * 61.36422 * 6 5 4 31 31 H 1.08997 * 109.62627 * 301.25898 * 6 5 4 32 32 H 1.08994 * 109.59038 * 185.72305 * 7 6 5 33 33 H 1.09001 * 109.58639 * 65.43729 * 7 6 5 34 34 H 0.96999 * 120.00125 * 180.02562 * 12 11 9 35 35 H 1.09002 * 109.59309 * 66.17729 * 17 8 7 36 36 H 1.09002 * 109.58362 * 186.46108 * 17 8 7 37 37 H 1.08992 * 109.49603 * 58.67264 * 18 5 4 38 38 H 1.09003 * 109.49499 * 298.57292 * 18 5 4 39 39 H 1.09007 * 109.47166 * 59.99181 * 20 19 2 40 40 H 1.09001 * 109.48004 * 179.97438 * 20 19 2 41 41 H 1.09001 * 109.46988 * 299.99992 * 20 19 2 42 42 H 1.08992 * 110.84603 * 337.31992 * 21 19 2 43 43 H 1.08995 * 110.84822 * 100.94670 * 21 19 2 44 44 H 1.08992 * 111.12567 * 276.21779 * 22 21 19 45 45 H 1.08993 * 111.15773 * 152.06703 * 22 21 19 46 46 H 1.09000 * 110.30563 * 204.64175 * 23 22 21 47 47 H 1.08993 * 110.39599 * 82.51063 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 2.1195 0.2316 2.3370 6 6 0.9936 -0.0616 3.3317 7 6 1.0821 0.9237 4.5014 8 7 2.4322 0.8583 5.0774 9 6 2.6093 0.6337 6.4165 10 1 3.5057 0.1444 6.7680 11 6 1.6367 1.0346 7.3221 12 7 0.7228 1.9104 6.9615 13 14 1.6252 0.3314 9.0527 14 1 2.7496 -0.6267 9.2052 15 1 1.7769 1.4338 10.0360 16 1 0.3397 -0.3724 9.2924 17 6 3.5886 1.0382 4.1891 18 6 3.4745 0.0495 3.0246 19 6 2.0400 -0.7211 -1.2493 20 6 3.5635 -0.8479 -1.1897 21 6 1.6269 0.0641 -2.5127 22 6 1.2538 -1.0744 -3.5010 23 6 0.6555 -2.1228 -2.5297 24 8 1.4472 -2.0223 -1.3352 25 1 -0.3633 -1.0271 -0.0343 26 1 -0.3632 0.4838 0.9067 27 1 -0.3634 0.5433 -0.8722 28 1 1.4340 -1.4823 1.4254 29 1 2.0281 1.2576 1.9805 30 1 1.0972 -1.0803 3.7055 31 1 0.0292 0.0480 2.8359 32 1 0.3475 0.6563 5.2609 33 1 0.8861 1.9344 4.1434 34 1 0.0434 2.1909 7.5945 35 1 3.5981 2.0576 3.8033 36 1 4.5080 0.8488 4.7433 37 1 4.2741 0.2372 2.3081 38 1 3.5563 -0.9694 3.4032 39 1 3.8464 -1.4174 -0.3043 40 1 3.9206 -1.3626 -2.0817 41 1 4.0091 0.1456 -1.1402 42 1 0.7649 0.6996 -2.3098 43 1 2.4619 0.6513 -2.8947 44 1 2.1391 -1.4643 -4.0033 45 1 0.5103 -0.7395 -4.2242 46 1 0.7379 -3.1230 -2.9551 47 1 -0.3869 -1.8890 -2.3134 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585725067.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:00 Heat of formation + Delta-G solvation = -32.671836 kcal Electronic energy + Delta-G solvation = -23815.081829 eV Core-core repulsion = 20611.830956 eV Total energy + Delta-G solvation = -3203.250872 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.20164 -37.95649 -35.50351 -33.01571 -32.21909 -31.15719 -29.97327 -29.74376 -28.06190 -25.87870 -24.59892 -22.93668 -21.98935 -21.97499 -21.09417 -19.99381 -18.87426 -16.87790 -16.52953 -15.71968 -15.23587 -15.03953 -14.68333 -14.40054 -13.85979 -13.59723 -13.48302 -13.34632 -12.98510 -12.60017 -12.54344 -12.45719 -12.34776 -11.97950 -11.90844 -11.73476 -11.40902 -11.25133 -11.05879 -10.98611 -10.82356 -10.72233 -10.62265 -10.52816 -10.32993 -10.07618 -9.96578 -9.66418 -9.49026 -9.27327 -8.44888 -7.88839 -6.60841 -5.74628 -3.16505 3.39702 3.47595 3.50322 3.72179 4.33401 4.37484 4.53887 4.67481 4.85425 4.94315 5.00037 5.14448 5.31537 5.39033 5.41806 5.48459 5.52100 5.53035 5.56933 5.64209 5.71362 5.76257 5.80048 5.87984 5.92197 5.95570 6.05331 6.12364 6.24997 6.27806 6.43587 6.50041 6.57218 6.66392 6.70058 6.75084 6.91910 7.10029 7.13442 7.40424 7.54312 7.68301 7.81769 7.85787 8.50313 9.26401 9.90416 10.47646 11.33908 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.038457 B = 0.003590 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.918603 B = 7797.358446 C = 8029.535244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.084 3.916 3 H 0.080 0.920 4 N -0.676 5.676 5 C 0.096 3.904 6 C -0.161 4.161 7 C 0.175 3.825 8 N -0.592 5.592 9 C -0.249 4.249 10 H 0.065 0.935 11 C 0.000 4.000 12 N -0.904 5.904 13 Si 0.901 3.099 14 H -0.277 1.277 15 H -0.291 1.291 16 H -0.290 1.290 17 C 0.144 3.856 18 C -0.114 4.114 19 C 0.119 3.881 20 C -0.140 4.140 21 C -0.151 4.151 22 C -0.155 4.155 23 C 0.049 3.951 24 O -0.364 6.364 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.343 0.657 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.045 0.955 32 H 0.084 0.916 33 H 0.015 0.985 34 H 0.252 0.748 35 H 0.014 0.986 36 H 0.053 0.947 37 H 0.051 0.949 38 H 0.057 0.943 39 H 0.080 0.920 40 H 0.045 0.955 41 H 0.058 0.942 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.075 0.925 45 H 0.078 0.922 46 H 0.079 0.921 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.128 -4.541 -20.703 21.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.027 4.027 3 H 0.098 0.902 4 N -0.306 5.306 5 C -0.013 4.013 6 C -0.201 4.201 7 C 0.049 3.951 8 N -0.315 5.315 9 C -0.378 4.378 10 H 0.083 0.917 11 C -0.198 4.198 12 N -0.549 5.549 13 Si 0.731 3.269 14 H -0.202 1.202 15 H -0.218 1.218 16 H -0.216 1.216 17 C 0.017 3.983 18 C -0.154 4.154 19 C 0.079 3.921 20 C -0.198 4.198 21 C -0.189 4.189 22 C -0.192 4.192 23 C -0.028 4.028 24 O -0.283 6.283 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.162 0.838 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.103 0.897 33 H 0.033 0.967 34 H 0.062 0.938 35 H 0.032 0.968 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.099 0.901 40 H 0.064 0.936 41 H 0.077 0.923 42 H 0.097 0.903 43 H 0.099 0.901 44 H 0.094 0.906 45 H 0.096 0.904 46 H 0.097 0.903 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.717 -4.571 -20.600 21.113 hybrid contribution -1.235 0.040 0.907 1.532 sum -0.518 -4.531 -19.693 20.214 Atomic orbital electron populations 1.22567 0.97355 1.02418 1.01847 1.21915 0.92802 0.97067 0.90874 0.90171 1.60640 1.55775 1.10429 1.03714 1.21563 0.96009 0.94427 0.89295 1.22819 0.96340 1.02049 0.98913 1.20675 0.88314 0.93682 0.92442 1.44054 0.99970 1.83443 1.04042 1.19245 1.05496 1.31085 0.82018 0.91694 1.25041 0.99752 0.97247 0.97743 1.70045 1.18529 1.31406 1.34922 0.86244 0.77504 0.78534 0.84643 1.20231 1.21787 1.21631 1.20948 0.91537 0.94868 0.90945 1.21978 0.95446 1.00778 0.97192 1.22143 0.93893 0.82659 0.93371 1.21883 0.93287 1.02004 1.02586 1.23282 1.02383 0.98291 0.94964 1.23218 1.01501 0.96274 0.98250 1.23329 0.94965 0.99217 0.85268 1.88482 1.65647 1.32402 1.41818 0.91905 0.92161 0.92832 0.83797 0.92465 0.92400 0.93669 0.89732 0.96729 0.93802 0.96843 0.92852 0.93006 0.92380 0.90080 0.93563 0.92280 0.90293 0.90122 0.90591 0.90366 0.90298 0.92617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.20 8.70 37.16 0.32 -1.87 16 2 C 0.08 1.06 1.92 -67.72 -0.13 0.93 16 3 H 0.08 1.04 7.33 -51.93 -0.38 0.66 16 4 N -0.68 -9.93 5.13 -99.69 -0.51 -10.45 16 5 C 0.10 1.65 2.49 -67.66 -0.17 1.48 16 6 C -0.16 -3.11 5.23 -26.60 -0.14 -3.25 16 7 C 0.18 4.25 5.30 -3.71 -0.02 4.23 16 8 N -0.59 -15.16 2.99 -172.32 -0.52 -15.68 16 9 C -0.25 -6.97 9.58 -15.06 -0.14 -7.12 16 10 H 0.07 1.80 7.89 -52.49 -0.41 1.38 16 11 C 0.00 0.01 4.91 -17.43 -0.09 -0.08 16 12 N -0.90 -26.64 11.22 55.49 0.62 -26.02 16 13 Si 0.90 22.03 29.59 -169.99 -5.03 17.00 16 14 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 15 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 16 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 17 C 0.14 3.11 6.52 -3.71 -0.02 3.09 16 18 C -0.11 -2.09 5.69 -26.61 -0.15 -2.24 16 19 C 0.12 1.34 0.72 -89.90 -0.07 1.28 16 20 C -0.14 -1.61 8.51 37.15 0.32 -1.30 16 21 C -0.15 -1.35 5.91 -24.78 -0.15 -1.49 16 22 C -0.15 -1.20 7.16 -24.48 -0.18 -1.38 16 23 C 0.05 0.45 7.71 38.19 0.29 0.75 16 24 O -0.36 -4.51 9.71 -35.23 -0.34 -4.85 16 25 H 0.06 0.78 7.48 -51.93 -0.39 0.39 16 26 H 0.06 0.80 6.65 -51.93 -0.35 0.45 16 27 H 0.05 0.56 6.40 -51.93 -0.33 0.22 16 28 H 0.34 5.26 7.91 -39.29 -0.31 4.95 16 29 H 0.06 1.01 7.14 -51.93 -0.37 0.64 16 30 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.04 0.80 6.70 -51.93 -0.35 0.45 16 32 H 0.08 2.30 6.08 -51.93 -0.32 1.99 16 33 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 35 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 36 H 0.05 1.14 7.93 -51.93 -0.41 0.72 16 37 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 39 H 0.08 1.09 7.49 -51.92 -0.39 0.70 16 40 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.08 0.68 6.09 -51.93 -0.32 0.37 16 43 H 0.08 0.65 7.82 -51.93 -0.41 0.24 16 44 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 47 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 351.08 15.07 5.29 5.29 Total: -1.00 -29.53 351.08 -9.31 -38.84 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -8.51 Total: 2.81 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: -0.32 Total: -6.95 kcal Atomic # 7 Polarization: -51.74 SS G_CDS: -0.41 Total: -52.14 kcal Atomic # 8 Polarization: -4.51 SS G_CDS: -0.34 Total: -4.85 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.03 Total: 17.00 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.53 -9.31 -38.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585725067.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.170 kcal (2) G-P(sol) polarization free energy of solvation -29.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds