Wall clock time and date at job start Tue Mar 31 2020 05:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47191 * 2 1 4 4 N 1.46896 * 109.47424 * 120.00534 * 2 1 3 5 5 C 1.46905 * 110.99964 * 277.51768 * 4 2 1 6 6 C 1.53041 * 109.45938 * 275.02889 * 5 4 2 7 7 C 1.53188 * 109.31048 * 178.59918 * 6 5 4 8 8 N 1.46924 * 108.76605 * 54.65633 * 7 6 5 9 9 C 1.36940 * 120.63518 * 126.40584 * 8 7 6 10 10 H 1.08004 * 119.99770 * 328.94762 * 9 8 7 11 11 C 1.38805 * 120.00368 * 148.94901 * 9 8 7 12 12 N 1.31624 * 120.00117 * 164.57400 * 11 9 8 13 13 Si 1.86801 * 119.99986 * 344.57665 * 11 9 8 14 14 H 1.48503 * 109.47296 * 90.81901 * 13 11 9 15 15 H 1.48498 * 109.47147 * 210.81641 * 13 11 9 16 16 H 1.48498 * 109.47326 * 330.81697 * 13 11 9 17 17 C 1.46927 * 118.73920 * 306.38156 * 8 7 6 18 18 C 1.53042 * 109.45999 * 154.97317 * 5 4 2 19 19 C 1.53006 * 109.47017 * 240.00374 * 2 1 3 20 20 C 1.53006 * 109.89491 * 56.42163 * 19 2 1 21 21 C 1.54383 * 109.83000 * 177.35537 * 19 2 1 22 22 C 1.55305 * 102.43321 * 140.97179 * 21 19 2 23 23 C 1.54937 * 100.94527 * 325.76228 * 22 21 19 24 24 O 1.43650 * 105.13513 * 36.44709 * 23 22 21 25 25 H 1.09008 * 109.47018 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46807 * 299.99076 * 1 2 3 27 27 H 1.08993 * 109.47537 * 59.99570 * 1 2 3 28 28 H 1.00902 * 111.00245 * 153.56420 * 4 2 1 29 29 H 1.09003 * 109.45603 * 34.99868 * 5 4 2 30 30 H 1.08999 * 109.49379 * 298.56354 * 6 5 4 31 31 H 1.08996 * 109.49844 * 58.65765 * 6 5 4 32 32 H 1.08995 * 109.60268 * 294.86762 * 7 6 5 33 33 H 1.09001 * 109.58499 * 174.42876 * 7 6 5 34 34 H 0.96999 * 119.99931 * 180.02562 * 12 11 9 35 35 H 1.09004 * 109.58752 * 293.82215 * 17 8 7 36 36 H 1.09003 * 109.58885 * 173.39896 * 17 8 7 37 37 H 1.09001 * 109.49300 * 301.33861 * 18 5 4 38 38 H 1.08998 * 109.49959 * 61.43311 * 18 5 4 39 39 H 1.09003 * 109.46665 * 180.23147 * 20 19 2 40 40 H 1.08997 * 109.46659 * 300.23052 * 20 19 2 41 41 H 1.08998 * 109.47104 * 60.23619 * 20 19 2 42 42 H 1.08994 * 110.84655 * 22.68146 * 21 19 2 43 43 H 1.08996 * 110.84648 * 259.26079 * 21 19 2 44 44 H 1.09002 * 111.12587 * 83.68670 * 22 21 19 45 45 H 1.09002 * 111.12194 * 207.84449 * 22 21 19 46 46 H 1.09007 * 110.30963 * 155.35691 * 23 22 21 47 47 H 1.08994 * 110.31218 * 277.43390 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6926 1.1993 5 6 2.0261 0.2068 2.3609 6 6 3.3269 1.0129 2.3744 7 6 3.3146 1.9744 3.5670 8 7 3.0702 1.2031 4.7934 9 6 3.9217 1.3021 5.8613 10 1 4.9709 1.5004 5.6987 11 6 3.4366 1.1474 7.1525 12 7 4.2713 0.9385 8.1486 13 14 1.5990 1.2357 7.4767 14 1 1.0130 -0.1253 7.3782 15 1 1.3621 1.7792 8.8382 16 1 0.9611 2.1232 6.4715 17 6 1.8944 0.3240 4.8526 18 6 1.9224 -0.6187 3.6454 19 6 2.0400 -0.7212 -1.2493 20 6 1.4633 -0.0611 -2.5035 21 6 3.5823 -0.6683 -1.2917 22 6 3.9509 -2.0806 -1.8222 23 6 2.8321 -2.9378 -1.1787 24 8 1.6604 -2.1072 -1.2064 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 2.9355 -1.0856 1.0413 29 1 1.1774 0.8878 2.2974 30 1 4.1748 0.3338 2.4630 31 1 3.4115 1.5825 1.4490 32 1 2.5223 2.7110 3.4346 33 1 4.2778 2.4795 3.6390 34 1 3.9322 0.8300 9.0509 35 1 0.9862 0.9261 4.8250 36 1 1.9205 -0.2597 5.7728 37 1 1.0073 -1.2105 3.6246 38 1 2.7837 -1.2823 3.7219 39 1 1.8276 -0.5826 -3.3886 40 1 0.3750 -0.1128 -2.4734 41 1 1.7767 0.9822 -2.5417 42 1 3.9925 -0.5092 -0.2945 43 1 3.9252 0.1057 -1.9783 44 1 3.8977 -2.1178 -2.9103 45 1 4.9347 -2.3888 -1.4681 46 1 2.6673 -3.8441 -1.7616 47 1 3.0935 -3.1916 -0.1515 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585725068.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:02 Heat of formation + Delta-G solvation = -26.302395 kcal Electronic energy + Delta-G solvation = -24091.386283 eV Core-core repulsion = 20888.411610 eV Total energy + Delta-G solvation = -3202.974673 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.33150 -38.17710 -35.66555 -33.25652 -32.26298 -31.62823 -30.35095 -29.82774 -28.26607 -26.30123 -24.56626 -23.20608 -22.50203 -21.76620 -21.20851 -19.83884 -19.35809 -17.03898 -16.54226 -16.12548 -15.47284 -15.38972 -14.63177 -14.21025 -14.14001 -13.87634 -13.67179 -13.38311 -13.18411 -13.01945 -12.90267 -12.61076 -12.41024 -12.24558 -11.96842 -11.85040 -11.76952 -11.56983 -11.45449 -11.11841 -10.88537 -10.80815 -10.74091 -10.54467 -10.47540 -10.11050 -9.98783 -9.67253 -9.48515 -9.38316 -8.60740 -8.09316 -6.88932 -5.91690 -3.32756 3.35216 3.50041 3.53250 3.63315 4.14678 4.38697 4.52384 4.55414 4.59914 4.85684 4.94781 5.01827 5.06988 5.27084 5.31472 5.35955 5.36936 5.44127 5.51039 5.54326 5.58123 5.60323 5.68823 5.71618 5.74839 5.79590 5.86841 5.91189 6.00894 6.06859 6.12798 6.20292 6.32369 6.42564 6.43512 6.55387 6.66734 6.69335 6.75686 6.95757 7.01421 7.36023 7.61492 8.03273 8.36609 8.97633 9.74687 10.14342 11.24571 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.029773 B = 0.004213 C = 0.004078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.224459 B = 6644.661101 C = 6865.000085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.083 3.917 3 H 0.048 0.952 4 N -0.674 5.674 5 C 0.094 3.906 6 C -0.162 4.162 7 C 0.153 3.847 8 N -0.607 5.607 9 C -0.260 4.260 10 H 0.083 0.917 11 C 0.024 3.976 12 N -0.914 5.914 13 Si 0.891 3.109 14 H -0.287 1.287 15 H -0.305 1.305 16 H -0.270 1.270 17 C 0.124 3.876 18 C -0.117 4.117 19 C 0.107 3.893 20 C -0.152 4.152 21 C -0.153 4.153 22 C -0.155 4.155 23 C 0.051 3.949 24 O -0.358 6.358 25 H 0.067 0.933 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.335 0.665 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.048 0.952 32 H 0.020 0.980 33 H 0.061 0.939 34 H 0.262 0.738 35 H 0.024 0.976 36 H 0.072 0.928 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.078 0.922 43 H 0.081 0.919 44 H 0.075 0.925 45 H 0.081 0.919 46 H 0.080 0.920 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.053 -3.785 -22.250 22.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.028 4.028 3 H 0.066 0.934 4 N -0.306 5.306 5 C -0.015 4.015 6 C -0.203 4.203 7 C 0.027 3.973 8 N -0.331 5.331 9 C -0.388 4.388 10 H 0.100 0.900 11 C -0.175 4.175 12 N -0.557 5.557 13 Si 0.722 3.278 14 H -0.215 1.215 15 H -0.233 1.233 16 H -0.196 1.196 17 C -0.002 4.002 18 C -0.157 4.157 19 C 0.068 3.932 20 C -0.210 4.210 21 C -0.191 4.191 22 C -0.193 4.193 23 C -0.026 4.026 24 O -0.277 6.277 25 H 0.086 0.914 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.155 0.845 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.038 0.962 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.042 0.958 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.096 0.904 43 H 0.100 0.900 44 H 0.093 0.907 45 H 0.100 0.900 46 H 0.098 0.902 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.844 -4.146 -21.911 22.820 hybrid contribution 0.108 0.648 0.128 0.670 sum -4.737 -3.497 -21.783 22.565 Atomic orbital electron populations 1.21780 0.94276 1.02737 1.00673 1.21748 0.96645 0.95274 0.89085 0.93403 1.60682 1.31495 1.35321 1.03116 1.21547 0.96781 0.92937 0.90261 1.22712 0.98577 1.00021 0.98952 1.20827 0.99129 0.91852 0.85531 1.44336 1.28171 1.47047 1.13522 1.18911 0.90675 1.45607 0.83636 0.89963 1.25357 0.97427 0.99331 0.95382 1.69790 1.34097 1.51789 1.00050 0.86850 0.87058 0.77673 0.76257 1.21496 1.23299 1.19556 1.21405 0.89840 0.91956 0.97033 1.21967 1.01448 0.98257 0.94019 1.22284 0.92957 0.83355 0.94643 1.22096 1.02320 1.00076 0.96520 1.23256 0.95232 0.98129 1.02499 1.23243 0.99936 0.94984 1.01133 1.23339 0.84901 0.94008 1.00304 1.88545 1.29290 1.14845 1.95051 0.91395 0.92924 0.92859 0.84519 0.91129 0.91989 0.93341 0.96167 0.92058 0.92779 0.95804 0.90969 0.92235 0.92026 0.92233 0.91282 0.91654 0.90359 0.90045 0.90659 0.90003 0.90224 0.91829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 8.83 37.16 0.33 -1.32 16 2 C 0.08 0.99 1.84 -67.71 -0.12 0.87 16 3 H 0.05 0.58 7.11 -51.93 -0.37 0.21 16 4 N -0.67 -9.31 5.83 -99.69 -0.58 -9.89 16 5 C 0.09 1.50 2.24 -67.67 -0.15 1.35 16 6 C -0.16 -2.63 5.31 -26.61 -0.14 -2.77 16 7 C 0.15 3.05 6.52 -3.71 -0.02 3.02 16 8 N -0.61 -14.59 2.74 -172.32 -0.47 -15.06 16 9 C -0.26 -7.37 10.04 -15.06 -0.15 -7.52 16 10 H 0.08 2.49 8.06 -52.48 -0.42 2.07 16 11 C 0.02 0.70 5.30 -17.43 -0.09 0.61 16 12 N -0.91 -28.40 13.97 55.49 0.78 -27.63 16 13 Si 0.89 22.92 24.29 -169.99 -4.13 18.79 16 14 H -0.29 -7.15 6.61 56.52 0.37 -6.78 16 15 H -0.30 -7.95 7.11 56.52 0.40 -7.55 16 16 H -0.27 -6.83 6.47 56.52 0.37 -6.47 16 17 C 0.12 2.75 4.16 -3.71 -0.02 2.74 16 18 C -0.12 -2.17 5.69 -26.61 -0.15 -2.32 16 19 C 0.11 1.12 0.65 -89.89 -0.06 1.06 16 20 C -0.15 -1.34 8.30 37.16 0.31 -1.04 16 21 C -0.15 -1.40 5.71 -24.78 -0.14 -1.54 16 22 C -0.16 -1.25 7.16 -24.49 -0.18 -1.43 16 23 C 0.05 0.50 7.75 38.18 0.30 0.79 16 24 O -0.36 -4.32 10.06 -35.23 -0.35 -4.68 16 25 H 0.07 0.90 7.84 -51.92 -0.41 0.49 16 26 H 0.05 0.67 7.24 -51.93 -0.38 0.29 16 27 H 0.05 0.54 6.39 -51.93 -0.33 0.21 16 28 H 0.33 4.50 6.16 -39.29 -0.24 4.25 16 29 H 0.07 1.16 6.93 -51.93 -0.36 0.80 16 30 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.05 0.68 7.38 -51.93 -0.38 0.30 16 32 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 1.22 7.93 -51.93 -0.41 0.81 16 34 H 0.26 7.74 8.31 -40.82 -0.34 7.41 16 35 H 0.02 0.53 6.89 -51.93 -0.36 0.18 16 36 H 0.07 1.76 4.58 -51.93 -0.24 1.53 16 37 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.62 6.39 -51.93 -0.33 0.29 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.08 0.79 6.29 -51.93 -0.33 0.46 16 43 H 0.08 0.65 7.82 -51.93 -0.41 0.24 16 44 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 46 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 343.33 15.07 5.17 5.17 Total: -1.00 -30.86 343.33 -8.27 -39.13 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -8.39 Total: 1.65 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: -0.30 Total: -7.49 kcal Atomic # 7 Polarization: -52.30 SS G_CDS: -0.28 Total: -52.58 kcal Atomic # 8 Polarization: -4.32 SS G_CDS: -0.35 Total: -4.68 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -4.13 Total: 18.79 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.86 -8.27 -39.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585725068.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.831 kcal (2) G-P(sol) polarization free energy of solvation -30.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds