Wall clock time and date at job start Tue Mar 31 2020 05:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46900 * 109.46986 * 2 1 4 4 C 1.48537 * 110.99744 * 56.10947 * 3 2 1 5 5 C 1.54933 * 103.22445 * 159.72196 * 4 3 2 6 6 C 1.54599 * 102.92499 * 322.57990 * 5 4 3 7 7 C 1.47907 * 111.00198 * 173.50256 * 3 2 1 8 8 H 1.09001 * 110.07992 * 333.60351 * 7 3 2 9 9 C 1.53003 * 109.91426 * 94.80364 * 7 3 2 10 10 N 1.46502 * 109.47442 * 296.95622 * 9 7 3 11 11 C 1.34776 * 120.00125 * 173.75089 * 10 9 7 12 12 O 1.21275 * 119.99911 * 0.02562 * 11 10 9 13 13 C 1.50696 * 119.99885 * 180.27791 * 11 10 9 14 14 C 1.52999 * 109.46974 * 179.72534 * 13 11 10 15 15 C 1.53004 * 109.46985 * 180.02562 * 14 13 11 16 16 C 1.52999 * 109.46985 * 179.97438 * 15 14 13 17 17 C 1.50704 * 109.47166 * 179.97438 * 16 15 14 18 18 H 1.08001 * 119.99833 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00022 * 180.02562 * 17 16 15 20 20 N 1.31522 * 120.00001 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 119.99900 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47524 * 59.99736 * 21 19 17 23 23 H 1.48503 * 109.47320 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47217 * 299.99259 * 21 19 17 25 25 H 1.08994 * 109.47389 * 299.99790 * 1 2 3 26 26 H 1.08999 * 109.47149 * 60.00022 * 1 2 3 27 27 H 1.09003 * 109.46935 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47176 * 240.00242 * 2 1 3 29 29 H 1.09000 * 109.47509 * 120.00661 * 2 1 3 30 30 H 1.08992 * 110.66615 * 41.28337 * 4 3 2 31 31 H 1.09000 * 110.66106 * 278.14978 * 4 3 2 32 32 H 1.09004 * 110.72070 * 204.22876 * 5 4 3 33 33 H 1.09000 * 110.73262 * 80.94319 * 5 4 3 34 34 H 1.09000 * 110.31187 * 263.04724 * 6 5 4 35 35 H 1.08998 * 110.30705 * 140.87250 * 6 5 4 36 36 H 1.09002 * 109.46685 * 176.96298 * 9 7 3 37 37 H 1.08998 * 109.47118 * 56.96005 * 9 7 3 38 38 H 0.97004 * 119.99890 * 353.75833 * 10 9 7 39 39 H 1.08995 * 109.47603 * 299.73103 * 13 11 10 40 40 H 1.09008 * 109.46998 * 59.72467 * 13 11 10 41 41 H 1.09000 * 109.46971 * 300.00105 * 14 13 11 42 42 H 1.08994 * 109.47207 * 60.00072 * 14 13 11 43 43 H 1.09000 * 109.47121 * 299.99730 * 15 14 13 44 44 H 1.09001 * 109.47082 * 60.00162 * 15 14 13 45 45 H 1.09004 * 109.47251 * 300.00223 * 16 15 14 46 46 H 1.09008 * 109.47313 * 59.99843 * 16 15 14 47 47 H 0.96992 * 119.99673 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.4680 2.1445 1.1511 5 6 2.4522 3.3322 1.2965 6 6 3.8207 2.6885 0.9759 7 6 3.4898 1.4275 0.1563 8 1 3.8357 0.5394 0.6852 9 6 4.1578 1.5087 -1.2179 10 7 3.8492 0.2982 -1.9832 11 6 4.2273 0.2020 -3.2733 12 8 4.8233 1.1173 -3.8004 13 6 3.9044 -1.0406 -4.0624 14 6 4.4347 -0.8906 -5.4896 15 6 4.1063 -2.1519 -6.2909 16 6 4.6361 -2.0016 -7.7184 17 6 4.3133 -3.2443 -8.5075 18 1 3.7828 -4.0595 -8.0380 19 6 4.6950 -3.3404 -9.8289 20 7 5.3405 -2.3474 -10.4008 21 14 4.2942 -4.8804 -10.8072 22 1 2.8224 -5.0744 -10.8439 23 1 4.8085 -4.7346 -12.1926 24 1 4.9326 -6.0562 -10.1630 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.4689 1.5316 2.0524 31 1 0.4628 2.5029 0.9292 32 1 2.4384 3.7222 2.3143 33 1 2.2177 4.1178 0.5781 34 1 4.3360 2.4165 1.8971 35 1 4.4320 3.3725 0.3873 36 1 5.2372 1.5940 -1.0926 37 1 3.7839 2.3819 -1.7526 38 1 3.3728 -0.4339 -1.5615 39 1 4.3731 -1.9035 -3.5894 40 1 2.8240 -1.1834 -4.0893 41 1 3.9658 -0.0277 -5.9626 42 1 5.5150 -0.7478 -5.4627 43 1 4.5749 -3.0150 -5.8181 44 1 3.0260 -2.2943 -6.3179 45 1 4.1672 -1.1385 -8.1910 46 1 5.7165 -1.8590 -7.6919 47 1 5.6087 -2.4150 -11.3305 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588265569.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:40 Heat of formation + Delta-G solvation = -62.081671 kcal Electronic energy + Delta-G solvation = -22008.220536 eV Core-core repulsion = 18803.694358 eV Total energy + Delta-G solvation = -3204.526178 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.19473 -39.07588 -35.03587 -34.52891 -33.95654 -32.57278 -30.66513 -29.42659 -29.04251 -26.20272 -24.91512 -23.25516 -22.00973 -21.10273 -20.98927 -19.96329 -19.77353 -17.02656 -16.71984 -16.24221 -15.99397 -15.72784 -15.16724 -15.13540 -14.67100 -14.40479 -13.96986 -13.58242 -13.42052 -13.19167 -12.84143 -12.57982 -12.54103 -12.01465 -11.92986 -11.79689 -11.63956 -11.61676 -11.52789 -11.43737 -11.20759 -10.98795 -10.92922 -10.50256 -10.46533 -10.35126 -9.70922 -9.55648 -9.16959 -9.03337 -8.94791 -8.84380 -8.26518 -5.91447 -3.93915 2.84991 3.21021 3.37773 3.41968 3.44299 3.45546 4.16763 4.22941 4.45504 4.52002 4.62945 4.73423 4.81091 4.88773 4.97073 5.05516 5.13636 5.26101 5.30341 5.39201 5.39868 5.43006 5.43976 5.45927 5.52944 5.54306 5.64570 5.73923 5.77754 5.86530 5.95375 6.20644 6.36761 6.38675 6.50092 6.61598 6.62941 6.90522 7.08622 7.25434 7.53213 7.78159 7.95127 8.10434 8.38271 8.52066 9.13667 9.69364 11.19895 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.032993 B = 0.002410 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.470681 B =11614.554522 C =12222.888221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.039 3.961 3 N -0.510 5.510 4 C 0.035 3.965 5 C -0.124 4.124 6 C -0.124 4.124 7 C 0.053 3.947 8 H 0.058 0.942 9 C 0.135 3.865 10 N -0.735 5.735 11 C 0.511 3.489 12 O -0.537 6.537 13 C -0.139 4.139 14 C -0.103 4.103 15 C -0.110 4.110 16 C 0.020 3.980 17 C -0.520 4.520 18 H 0.053 0.947 19 C 0.055 3.945 20 N -0.896 5.896 21 Si 0.892 3.108 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.277 1.277 25 H 0.054 0.946 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.076 0.924 29 H 0.035 0.965 30 H 0.044 0.956 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.065 0.935 37 H 0.076 0.924 38 H 0.394 0.606 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.046 0.954 44 H 0.046 0.954 45 H 0.016 0.984 46 H 0.016 0.984 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.804 8.107 29.127 31.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.089 4.089 3 N -0.235 5.235 4 C -0.093 4.093 5 C -0.162 4.162 6 C -0.163 4.163 7 C -0.056 4.056 8 H 0.076 0.924 9 C 0.011 3.989 10 N -0.390 5.390 11 C 0.298 3.702 12 O -0.413 6.413 13 C -0.179 4.179 14 C -0.141 4.141 15 C -0.148 4.148 16 C -0.017 4.017 17 C -0.558 4.558 18 H 0.072 0.928 19 C -0.146 4.146 20 N -0.535 5.535 21 Si 0.720 3.280 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.203 1.203 25 H 0.074 0.926 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.095 0.905 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.102 0.898 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.098 0.902 36 H 0.083 0.917 37 H 0.095 0.905 38 H 0.231 0.769 39 H 0.106 0.894 40 H 0.107 0.893 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.034 0.966 46 H 0.034 0.966 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.446 9.044 28.063 30.410 hybrid contribution -0.205 -1.654 0.408 1.716 sum -7.651 7.390 28.471 30.393 Atomic orbital electron populations 1.21818 0.94366 1.02093 1.02634 1.22390 0.96665 0.89284 1.00606 1.64783 1.04675 1.12786 1.41258 1.23234 0.99369 0.94735 0.91925 1.22494 0.94089 0.97831 1.01808 1.22374 0.98098 0.96166 0.99642 1.22670 0.88796 0.98559 0.95584 0.92367 1.21365 0.98543 0.88819 0.90183 1.46239 1.60685 1.19740 1.12385 1.21056 0.78133 0.89607 0.81361 1.90697 1.40424 1.40624 1.69545 1.21788 1.03075 0.95145 0.97891 1.21440 1.01329 0.99925 0.91379 1.21649 0.99921 0.94837 0.98360 1.19097 0.96379 0.96892 0.89366 1.21253 1.36458 1.02218 0.95909 0.92830 1.25046 0.95346 0.96303 0.97915 1.69969 1.39507 1.31394 1.12626 0.86669 0.78638 0.83636 0.79088 1.20302 1.21339 1.20309 0.92650 0.91521 0.91975 0.90548 0.94637 0.93756 0.89807 0.90949 0.90455 0.91063 0.90233 0.91672 0.90537 0.76935 0.89370 0.89269 0.91805 0.91844 0.93540 0.93512 0.96578 0.96603 0.93009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.67 37.16 0.36 -0.59 16 2 C 0.04 0.27 5.29 -3.83 -0.02 0.25 16 3 N -0.51 -3.97 4.95 -222.57 -1.10 -5.07 16 4 C 0.03 0.22 5.25 -1.90 -0.01 0.21 16 5 C -0.12 -0.71 7.06 -24.87 -0.18 -0.88 16 6 C -0.12 -0.76 6.57 -25.37 -0.17 -0.92 16 7 C 0.05 0.40 2.70 -66.64 -0.18 0.22 16 8 H 0.06 0.41 7.64 -51.93 -0.40 0.01 16 9 C 0.14 1.37 5.12 -4.04 -0.02 1.35 16 10 N -0.74 -8.10 5.32 -60.29 -0.32 -8.42 16 11 C 0.51 7.59 7.83 -10.99 -0.09 7.50 16 12 O -0.54 -10.31 15.97 5.56 0.09 -10.22 16 13 C -0.14 -1.95 5.70 -27.89 -0.16 -2.11 16 14 C -0.10 -1.92 4.50 -26.73 -0.12 -2.04 16 15 C -0.11 -2.33 5.15 -26.73 -0.14 -2.47 16 16 C 0.02 0.53 4.97 -27.88 -0.14 0.40 16 17 C -0.52 -15.23 9.11 -34.44 -0.31 -15.54 16 18 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 19 C 0.05 1.62 5.46 -17.82 -0.10 1.53 16 20 N -0.90 -27.90 13.29 55.43 0.74 -27.16 16 21 Si 0.89 22.17 29.54 -169.99 -5.02 17.15 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 H 0.05 0.31 6.86 -51.93 -0.36 -0.04 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.08 0.54 5.52 -51.93 -0.29 0.25 16 29 H 0.04 0.22 7.92 -51.93 -0.41 -0.19 16 30 H 0.04 0.25 8.02 -51.93 -0.42 -0.16 16 31 H 0.08 0.51 7.65 -51.93 -0.40 0.12 16 32 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.08 0.50 7.69 -51.93 -0.40 0.10 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.08 0.93 8.12 -51.93 -0.42 0.51 16 38 H 0.39 3.39 5.61 -40.82 -0.23 3.17 16 39 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.09 1.10 8.14 -51.92 -0.42 0.68 16 41 H 0.06 1.27 8.10 -51.93 -0.42 0.85 16 42 H 0.06 1.26 8.10 -51.93 -0.42 0.84 16 43 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 47 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 369.72 15.07 5.57 5.57 Total: -1.00 -34.13 369.72 -10.08 -44.21 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -8.77 Total: -2.94 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: -1.27 Total: -13.12 kcal Atomic # 7 Polarization: -39.97 SS G_CDS: -0.69 Total: -40.66 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.09 Total: -10.22 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.13 -10.08 -44.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588265569.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.869 kcal (2) G-P(sol) polarization free energy of solvation -34.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds