Wall clock time and date at job start Tue Mar 31 2020 05:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46902 * 109.47466 * 2 1 4 4 C 1.46846 * 110.99617 * 294.20987 * 3 2 1 5 5 C 1.53040 * 109.51964 * 174.15808 * 4 3 2 6 6 C 1.53119 * 109.28089 * 59.17912 * 5 4 3 7 7 N 1.46496 * 109.52113 * 182.44092 * 6 5 4 8 8 C 1.34775 * 119.99879 * 274.68043 * 7 6 5 9 9 O 1.21284 * 119.99953 * 0.02562 * 8 7 6 10 10 C 1.50702 * 119.99943 * 180.02562 * 8 7 6 11 11 C 1.53007 * 109.46873 * 179.97438 * 10 8 7 12 12 C 1.53004 * 109.46716 * 180.02562 * 11 10 8 13 13 C 1.52997 * 109.46669 * 179.97438 * 12 11 10 14 14 C 1.50702 * 109.46825 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00233 * 359.97438 * 14 13 12 16 16 C 1.37884 * 119.99999 * 180.02562 * 14 13 12 17 17 N 1.31517 * 119.99803 * 180.02562 * 16 14 13 18 18 Si 1.86795 * 119.99981 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.46849 * 90.00043 * 18 16 14 20 20 H 1.48491 * 109.47353 * 210.00095 * 18 16 14 21 21 H 1.48502 * 109.47275 * 330.00508 * 18 16 14 22 22 C 1.53124 * 109.15841 * 302.34776 * 6 5 4 23 23 C 1.46846 * 111.00204 * 169.99882 * 3 2 1 24 24 H 1.09004 * 109.47372 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47207 * 299.99940 * 1 2 3 26 26 H 1.09002 * 109.46874 * 60.00238 * 1 2 3 27 27 H 1.08997 * 109.47222 * 239.99574 * 2 1 3 28 28 H 1.09007 * 109.47397 * 120.00253 * 2 1 3 29 29 H 1.08996 * 109.46231 * 294.17554 * 4 3 2 30 30 H 1.09004 * 109.46418 * 54.14394 * 4 3 2 31 31 H 1.09004 * 109.50602 * 299.23671 * 5 4 3 32 32 H 1.08998 * 109.50366 * 179.12192 * 5 4 3 33 33 H 1.09003 * 109.56984 * 62.28008 * 6 5 4 34 34 H 0.96996 * 119.99874 * 94.69064 * 7 6 5 35 35 H 1.08994 * 109.47193 * 299.99649 * 10 8 7 36 36 H 1.09000 * 109.46869 * 60.00312 * 10 8 7 37 37 H 1.08994 * 109.46967 * 299.99840 * 11 10 8 38 38 H 1.08991 * 109.47254 * 60.00377 * 11 10 8 39 39 H 1.08996 * 109.46844 * 300.00016 * 12 11 10 40 40 H 1.09000 * 109.47083 * 60.00328 * 12 11 10 41 41 H 1.08996 * 109.47518 * 299.99624 * 13 12 11 42 42 H 1.09000 * 109.47083 * 60.00350 * 13 12 11 43 43 H 0.96998 * 119.99481 * 180.02562 * 17 16 14 44 44 H 1.08999 * 109.49853 * 297.70868 * 22 6 5 45 45 H 1.08994 * 109.53481 * 177.61659 * 22 6 5 46 46 H 1.09001 * 109.45990 * 305.85570 * 23 3 2 47 47 H 1.08999 * 109.46398 * 65.83493 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6651 2.0685 -1.2504 5 6 2.0608 3.5439 -1.1567 6 6 3.5676 3.6482 -0.9057 7 7 3.9427 5.0565 -0.7570 8 6 4.2104 5.8013 -1.8479 9 8 4.1403 5.3058 -2.9527 10 6 4.5969 7.2499 -1.6950 11 6 4.8455 7.8599 -3.0760 12 6 5.2385 9.3304 -2.9206 13 6 5.4878 9.9402 -4.3015 14 6 5.8742 11.3888 -4.1486 15 1 5.9355 11.8304 -3.1649 16 6 6.1486 12.1507 -5.2646 17 7 6.4863 13.4147 -5.1311 18 14 6.0420 11.3871 -6.9660 19 1 4.6652 11.5525 -7.4974 20 1 7.0065 12.0605 -7.8722 21 1 6.3693 9.9411 -6.8811 22 6 3.9175 2.8873 0.3762 23 6 3.4680 1.4311 0.2381 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 2.1942 1.6026 -2.0816 30 1 0.5903 1.9904 -1.4148 31 1 1.5214 4.0138 -0.3342 32 1 1.8117 4.0475 -2.0907 33 1 4.1087 3.2138 -1.7463 34 1 3.9986 5.4529 0.1265 35 1 3.7911 7.7904 -1.1984 36 1 5.5055 7.3224 -1.0973 37 1 5.6515 7.3193 -3.5722 38 1 3.9373 7.7874 -3.6741 39 1 4.4328 9.8713 -2.4242 40 1 6.1470 9.4025 -2.3227 41 1 6.2936 9.3993 -4.7976 42 1 4.5795 9.8681 -4.8999 43 1 6.6790 13.9507 -5.9162 44 1 3.4074 3.3469 1.2228 45 1 4.9948 2.9219 0.5381 46 1 3.7027 0.8900 1.1548 47 1 3.9888 0.9684 -0.6002 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588267359.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:02 Heat of formation + Delta-G solvation = -67.181715 kcal Electronic energy + Delta-G solvation = -21866.224917 eV Core-core repulsion = 18661.477584 eV Total energy + Delta-G solvation = -3204.747333 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.25528 -38.93403 -35.75739 -34.90825 -32.88755 -32.46380 -31.30880 -30.31470 -29.30647 -26.08563 -24.39442 -23.61710 -22.15982 -21.57799 -20.49992 -19.99977 -19.90612 -17.09648 -16.76804 -16.44386 -15.88702 -15.77192 -15.51305 -14.90728 -14.46269 -14.22666 -14.07140 -13.79712 -13.68415 -13.58110 -12.85417 -12.63039 -12.43580 -12.25639 -12.15265 -12.04197 -11.74496 -11.71189 -11.58620 -11.45023 -11.09630 -10.95276 -10.83750 -10.71293 -10.51359 -9.93204 -9.78366 -9.62653 -9.38281 -9.15842 -9.09883 -8.75196 -8.47740 -5.99024 -3.96285 2.70455 3.07798 3.36544 3.43425 3.44505 3.49701 4.30706 4.43710 4.51560 4.61693 4.69702 4.78003 4.84725 4.90377 5.02890 5.05511 5.13831 5.21748 5.26343 5.30314 5.32809 5.36348 5.37529 5.42078 5.53334 5.60513 5.66606 5.77335 5.79260 5.85748 5.99524 6.06145 6.18486 6.35539 6.45565 6.65207 6.67104 6.71096 6.85126 7.01617 7.40379 7.44213 7.53211 7.86587 8.25629 8.60114 9.06104 9.64430 11.14465 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.043759 B = 0.002278 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.710858 B =12288.557353 C =12588.889408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.050 3.950 3 N -0.540 5.540 4 C 0.055 3.945 5 C -0.126 4.126 6 C 0.144 3.856 7 N -0.734 5.734 8 C 0.513 3.487 9 O -0.538 6.538 10 C -0.139 4.139 11 C -0.106 4.106 12 C -0.103 4.103 13 C -0.016 4.016 14 C -0.519 4.519 15 H 0.071 0.929 16 C 0.064 3.936 17 N -0.906 5.906 18 Si 0.880 3.120 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.265 1.265 22 C -0.123 4.123 23 C 0.059 3.941 24 H 0.058 0.942 25 H 0.063 0.937 26 H 0.055 0.945 27 H 0.032 0.968 28 H 0.074 0.926 29 H 0.035 0.965 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.400 0.600 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.015 0.985 42 H 0.011 0.989 43 H 0.262 0.738 44 H 0.077 0.923 45 H 0.074 0.926 46 H 0.079 0.921 47 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.638 -28.017 14.660 33.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.078 4.078 3 N -0.265 5.265 4 C -0.073 4.073 5 C -0.165 4.165 6 C 0.039 3.961 7 N -0.386 5.386 8 C 0.300 3.700 9 O -0.414 6.414 10 C -0.179 4.179 11 C -0.144 4.144 12 C -0.140 4.140 13 C -0.053 4.053 14 C -0.557 4.557 15 H 0.089 0.911 16 C -0.137 4.137 17 N -0.545 5.545 18 Si 0.707 3.293 19 H -0.203 1.203 20 H -0.215 1.215 21 H -0.189 1.189 22 C -0.161 4.161 23 C -0.069 4.069 24 H 0.077 0.923 25 H 0.082 0.918 26 H 0.074 0.926 27 H 0.051 0.949 28 H 0.092 0.908 29 H 0.053 0.947 30 H 0.099 0.901 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.234 0.766 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.034 0.966 42 H 0.029 0.971 43 H 0.072 0.928 44 H 0.096 0.904 45 H 0.092 0.908 46 H 0.097 0.903 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -9.853 -27.968 14.122 32.844 hybrid contribution 0.380 -0.478 -1.130 1.285 sum -9.473 -28.446 12.992 32.675 Atomic orbital electron populations 1.21814 0.94752 1.01578 1.02628 1.22059 0.96267 0.88685 1.00746 1.62004 1.13608 1.15580 1.35347 1.22109 1.01212 0.94129 0.89829 1.21981 0.95851 0.95766 1.02937 1.20951 0.95228 0.81544 0.98416 1.46153 1.71562 1.11239 1.09620 1.21091 0.75672 0.89120 0.84070 1.90693 1.51497 1.73688 1.25544 1.21779 1.03182 0.91122 1.01838 1.21474 1.02236 0.96935 0.93726 1.21478 1.00268 0.92301 0.99988 1.19579 0.96190 0.96568 0.92976 1.21191 1.46000 0.93555 0.94941 0.91107 1.25050 0.94676 0.94704 0.99242 1.69924 1.47721 1.06961 1.29929 0.86769 0.78035 0.80094 0.84371 1.20322 1.21470 1.18915 1.21857 1.01370 0.95134 0.97770 1.22010 0.87518 0.96404 1.00980 0.92302 0.91771 0.92567 0.94933 0.90771 0.94676 0.90120 0.90854 0.90803 0.89885 0.76621 0.89003 0.89039 0.91863 0.91848 0.92868 0.92855 0.96631 0.97070 0.92841 0.90400 0.90758 0.90267 0.94624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.84 37.15 0.37 -0.47 16 2 C 0.05 0.31 5.68 -3.83 -0.02 0.29 16 3 N -0.54 -4.00 4.66 -234.67 -1.09 -5.10 16 4 C 0.06 0.45 5.29 -3.83 -0.02 0.43 16 5 C -0.13 -1.17 5.67 -26.65 -0.15 -1.32 16 6 C 0.14 1.33 2.52 -67.81 -0.17 1.16 16 7 N -0.73 -7.04 5.08 -53.68 -0.27 -7.31 16 8 C 0.51 6.83 7.80 -10.99 -0.09 6.74 16 9 O -0.54 -9.42 15.64 5.55 0.09 -9.33 16 10 C -0.14 -1.77 5.70 -27.88 -0.16 -1.93 16 11 C -0.11 -1.80 4.50 -26.73 -0.12 -1.92 16 12 C -0.10 -2.05 5.15 -26.73 -0.14 -2.18 16 13 C -0.02 -0.39 4.04 -27.88 -0.11 -0.50 16 14 C -0.52 -15.22 9.66 -34.44 -0.33 -15.55 16 15 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 16 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 17 N -0.91 -28.55 13.96 55.43 0.77 -27.78 16 18 Si 0.88 22.54 27.47 -169.99 -4.67 17.87 16 19 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 21 H -0.26 -6.59 6.54 56.52 0.37 -6.22 16 22 C -0.12 -0.84 5.57 -26.65 -0.15 -0.98 16 23 C 0.06 0.40 5.46 -3.84 -0.02 0.38 16 24 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 25 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.33 6.43 -51.93 -0.33 0.00 16 27 H 0.03 0.21 8.12 -51.93 -0.42 -0.22 16 28 H 0.07 0.40 7.99 -51.93 -0.41 -0.02 16 29 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.08 0.61 6.21 -51.93 -0.32 0.29 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.08 0.96 7.58 -51.93 -0.39 0.57 16 34 H 0.40 2.73 8.61 -40.82 -0.35 2.37 16 35 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.06 1.14 8.10 -51.93 -0.42 0.72 16 38 H 0.06 1.14 8.10 -51.93 -0.42 0.72 16 39 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 42 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 43 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 44 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.08 0.44 8.02 -51.93 -0.42 0.02 16 47 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 LS Contribution 367.84 15.07 5.54 5.54 Total: -1.00 -33.85 367.84 -9.77 -43.62 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -8.92 Total: -3.49 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: -1.21 Total: -14.03 kcal Atomic # 7 Polarization: -39.59 SS G_CDS: -0.59 Total: -40.18 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.09 Total: -9.33 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -4.67 Total: 17.87 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.85 -9.77 -43.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588267359.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.563 kcal (2) G-P(sol) polarization free energy of solvation -33.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds