Wall clock time and date at job start Tue Mar 31 2020 05:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09001 * 109.47085 * 2 1 4 4 C 1.53005 * 109.47325 * 240.00516 * 2 1 3 5 5 N 1.46503 * 109.47144 * 64.56040 * 4 2 1 6 6 C 1.34775 * 120.00380 * 185.19075 * 5 4 2 7 7 O 1.21283 * 119.99274 * 0.02562 * 6 5 4 8 8 C 1.50699 * 120.00380 * 180.02562 * 6 5 4 9 9 C 1.52994 * 109.47022 * 179.97438 * 8 6 5 10 10 C 1.53002 * 109.46943 * 179.97438 * 9 8 6 11 11 C 1.53002 * 109.47157 * 179.97438 * 10 9 8 12 12 C 1.50701 * 109.47153 * 180.02562 * 11 10 9 13 13 H 1.07995 * 119.99926 * 359.97438 * 12 11 10 14 14 C 1.37878 * 119.99740 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99725 * 180.02562 * 14 12 11 16 16 Si 1.86797 * 120.00255 * 0.02562 * 14 12 11 17 17 H 1.48496 * 109.47337 * 90.00036 * 16 14 12 18 18 H 1.48499 * 109.47215 * 210.00069 * 16 14 12 19 19 H 1.48502 * 109.47331 * 330.00190 * 16 14 12 20 20 N 1.46894 * 109.47225 * 120.00692 * 2 1 3 21 21 C 1.48539 * 111.00274 * 179.38389 * 20 2 1 22 22 C 1.54934 * 103.22970 * 159.71622 * 21 20 2 23 23 C 1.54601 * 102.92291 * 322.58579 * 22 21 20 24 24 C 1.47905 * 110.99539 * 296.77482 * 20 2 1 25 25 H 1.09001 * 109.47077 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47323 * 299.99776 * 1 2 3 27 27 H 1.09005 * 109.47153 * 59.99820 * 1 2 3 28 28 H 1.09001 * 109.47065 * 184.56136 * 4 2 1 29 29 H 1.08995 * 109.46938 * 304.56566 * 4 2 1 30 30 H 0.96998 * 120.00046 * 5.19625 * 5 4 2 31 31 H 1.09004 * 109.46616 * 299.99941 * 8 6 5 32 32 H 1.08997 * 109.46786 * 59.99729 * 8 6 5 33 33 H 1.08997 * 109.47816 * 300.00137 * 9 8 6 34 34 H 1.09005 * 109.47170 * 59.99695 * 9 8 6 35 35 H 1.09003 * 109.47477 * 299.99980 * 10 9 8 36 36 H 1.08997 * 109.46912 * 60.00379 * 10 9 8 37 37 H 1.08997 * 109.47264 * 300.00936 * 11 10 9 38 38 H 1.09005 * 109.47055 * 60.00080 * 11 10 9 39 39 H 0.96998 * 120.00009 * 179.97438 * 15 14 12 40 40 H 1.08997 * 110.66198 * 278.15561 * 21 20 2 41 41 H 1.08999 * 110.66605 * 41.27826 * 21 20 2 42 42 H 1.09002 * 110.72556 * 204.22127 * 22 21 20 43 43 H 1.09006 * 110.87417 * 81.01549 * 22 21 20 44 44 H 1.08997 * 110.30313 * 263.03951 * 23 22 21 45 45 H 1.08997 * 110.30797 * 140.87419 * 23 22 21 46 46 H 1.09001 * 109.92056 * 333.50786 * 24 20 2 47 47 H 1.08996 * 109.91560 * 94.80977 * 24 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 7 1.6434 0.0301 -2.4429 6 6 1.8933 -0.4713 -3.6687 7 8 2.4461 -1.5447 -3.7836 8 6 1.4859 0.3017 -4.8965 9 6 1.8826 -0.4834 -6.1484 10 6 1.4684 0.3011 -7.3949 11 6 1.8657 -0.4836 -8.6468 12 6 1.4583 0.2894 -9.8746 13 1 0.9649 1.2446 -9.7723 14 6 1.7144 -0.2234 -11.1286 15 7 1.3593 0.4514 -12.2001 16 14 2.5659 -1.8766 -11.3056 17 1 1.5473 -2.9564 -11.3443 18 1 3.3547 -1.8950 -12.5636 19 1 3.4726 -2.0928 -10.1496 20 7 2.0196 -0.6926 1.1993 21 6 3.5044 -0.7254 1.2262 22 6 3.8263 -0.9820 2.7198 23 6 2.7449 -0.1560 3.4535 24 6 1.6098 0.0214 2.4281 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 3.1269 -0.7924 -1.2094 29 1 1.6114 -1.7224 -1.2912 30 1 1.2010 0.8884 -2.3510 31 1 0.4064 0.4529 -4.8890 32 1 1.9883 1.2689 -4.9002 33 1 2.9620 -0.6344 -6.1557 34 1 1.3805 -1.4509 -6.1448 35 1 0.3888 0.4517 -7.3874 36 1 1.9702 1.2687 -7.3986 37 1 2.9452 -0.6339 -8.6540 38 1 1.3642 -1.4515 -8.6433 39 1 1.5399 0.0909 -13.0823 40 1 3.8824 -1.5380 0.6059 41 1 3.9162 0.2305 0.9026 42 1 4.8236 -0.6184 2.9675 43 1 3.7326 -2.0409 2.9610 44 1 3.1447 0.8145 3.7471 45 1 2.3837 -0.6975 4.3279 46 1 1.4666 1.0802 2.2121 47 1 0.6872 -0.4090 2.8174 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588281697.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:04 Heat of formation + Delta-G solvation = -61.754020 kcal Electronic energy + Delta-G solvation = -21680.425612 eV Core-core repulsion = 18475.913642 eV Total energy + Delta-G solvation = -3204.511970 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.12268 -39.27205 -35.92699 -34.94611 -33.18692 -32.52315 -30.27507 -29.75240 -29.09325 -26.99538 -25.37100 -22.77882 -21.95931 -21.14542 -20.72775 -20.09431 -19.99769 -17.11732 -16.89402 -16.57950 -16.03403 -15.94925 -15.55064 -15.12590 -14.43861 -14.15935 -14.08194 -13.75393 -13.39730 -13.33016 -13.07569 -12.70789 -12.62478 -12.27181 -12.10774 -11.92577 -11.81064 -11.72522 -11.55774 -11.44754 -11.27481 -11.08600 -11.01940 -10.71427 -10.51457 -9.96199 -9.79766 -9.62640 -9.40165 -9.18799 -9.09915 -8.91252 -8.47601 -5.98922 -3.96239 2.70209 2.93466 3.36950 3.43820 3.50172 3.62715 4.14505 4.17436 4.38969 4.51710 4.51801 4.59931 4.80677 4.80939 4.86534 5.03934 5.14681 5.24838 5.30323 5.31159 5.34517 5.36189 5.37532 5.39221 5.47543 5.51881 5.59179 5.66161 5.72893 5.81800 5.84091 6.05672 6.17880 6.23437 6.39519 6.44253 6.58490 6.70946 6.85074 7.01529 7.38873 7.40668 7.53274 7.86671 8.23406 8.60121 9.06100 9.64546 11.14552 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.045793 B = 0.002182 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.301604 B =12827.174714 C =13182.832926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.063 3.937 3 H 0.048 0.952 4 C 0.125 3.875 5 N -0.737 5.737 6 C 0.513 3.487 7 O -0.536 6.536 8 C -0.138 4.138 9 C -0.106 4.106 10 C -0.103 4.103 11 C -0.016 4.016 12 C -0.519 4.519 13 H 0.071 0.929 14 C 0.064 3.936 15 N -0.906 5.906 16 Si 0.880 3.120 17 H -0.277 1.277 18 H -0.289 1.289 19 H -0.264 1.264 20 N -0.510 5.510 21 C 0.030 3.970 22 C -0.124 4.124 23 C -0.132 4.132 24 C 0.038 3.962 25 H 0.067 0.933 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.077 0.923 30 H 0.398 0.602 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.015 0.985 38 H 0.011 0.989 39 H 0.262 0.738 40 H 0.086 0.914 41 H 0.046 0.954 42 H 0.071 0.929 43 H 0.076 0.924 44 H 0.066 0.934 45 H 0.072 0.928 46 H 0.045 0.955 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.877 1.342 33.778 33.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.046 4.046 3 H 0.066 0.934 4 C 0.001 3.999 5 N -0.391 5.391 6 C 0.300 3.700 7 O -0.412 6.412 8 C -0.178 4.178 9 C -0.144 4.144 10 C -0.140 4.140 11 C -0.053 4.053 12 C -0.557 4.557 13 H 0.089 0.911 14 C -0.137 4.137 15 N -0.545 5.545 16 Si 0.707 3.293 17 H -0.203 1.203 18 H -0.215 1.215 19 H -0.189 1.189 20 N -0.235 5.235 21 C -0.098 4.098 22 C -0.162 4.162 23 C -0.171 4.171 24 C -0.090 4.090 25 H 0.087 0.913 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.096 0.904 30 H 0.233 0.767 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.034 0.966 38 H 0.030 0.970 39 H 0.072 0.928 40 H 0.105 0.895 41 H 0.065 0.935 42 H 0.090 0.910 43 H 0.094 0.906 44 H 0.085 0.915 45 H 0.091 0.909 46 H 0.063 0.937 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.059 0.021 33.475 33.492 hybrid contribution 0.483 0.501 -0.152 0.713 sum 1.543 0.522 33.323 33.362 Atomic orbital electron populations 1.21867 0.93423 1.03200 1.01829 1.21993 0.96632 0.95685 0.90301 0.93425 1.21274 0.99759 0.96131 0.82712 1.46044 1.63178 1.24204 1.05714 1.21065 0.78076 0.86342 0.84514 1.90707 1.41571 1.22153 1.86738 1.21771 1.03100 1.00196 0.92770 1.21480 1.01838 0.98878 0.92224 1.21478 1.00277 0.98645 0.93619 1.19582 0.96400 0.95790 0.93556 1.21186 1.38678 1.06554 0.89266 0.91118 1.25049 0.95329 0.97374 0.95921 1.69923 1.48064 1.38684 0.97877 0.86768 0.80292 0.84642 0.77565 1.20314 1.21473 1.18899 1.64753 1.09059 1.48642 1.01050 1.23309 0.87996 1.01052 0.97433 1.22480 0.98457 1.01031 0.94218 1.22416 0.95790 1.00408 0.98449 1.22855 0.99043 0.96835 0.90279 0.91347 0.92411 0.91871 0.91787 0.90437 0.76745 0.88979 0.89045 0.91816 0.91786 0.92864 0.92866 0.96619 0.97044 0.92839 0.89536 0.93544 0.90990 0.90562 0.91521 0.90891 0.93668 0.90162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.02 37.15 0.34 -0.61 16 2 C 0.06 0.46 1.86 -67.72 -0.13 0.33 16 3 H 0.05 0.33 7.99 -51.93 -0.41 -0.09 16 4 C 0.13 1.20 5.02 -4.04 -0.02 1.18 16 5 N -0.74 -7.13 5.21 -60.29 -0.31 -7.45 16 6 C 0.51 6.92 7.83 -10.99 -0.09 6.83 16 7 O -0.54 -9.60 15.98 5.55 0.09 -9.51 16 8 C -0.14 -1.75 5.70 -27.89 -0.16 -1.91 16 9 C -0.11 -1.81 4.50 -26.73 -0.12 -1.93 16 10 C -0.10 -2.04 5.15 -26.73 -0.14 -2.18 16 11 C -0.02 -0.39 4.04 -27.88 -0.11 -0.51 16 12 C -0.52 -15.21 9.66 -34.44 -0.33 -15.54 16 13 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 14 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 15 N -0.91 -28.55 13.96 55.43 0.77 -27.77 16 16 Si 0.88 22.55 27.47 -169.99 -4.67 17.88 16 17 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 18 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 19 H -0.26 -6.59 6.54 56.52 0.37 -6.22 16 20 N -0.51 -3.83 5.11 -222.50 -1.14 -4.97 16 21 C 0.03 0.21 5.38 -1.90 -0.01 0.20 16 22 C -0.12 -0.70 7.06 -24.87 -0.18 -0.88 16 23 C -0.13 -0.68 6.93 -25.37 -0.18 -0.86 16 24 C 0.04 0.23 5.48 -2.75 -0.02 0.21 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.33 7.25 -51.93 -0.38 -0.05 16 27 H 0.06 0.37 7.27 -51.93 -0.38 -0.01 16 28 H 0.06 0.67 6.69 -51.93 -0.35 0.32 16 29 H 0.08 0.89 8.13 -51.93 -0.42 0.47 16 30 H 0.40 2.71 7.81 -40.82 -0.32 2.39 16 31 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.06 1.15 8.10 -51.93 -0.42 0.73 16 34 H 0.06 1.15 8.10 -51.93 -0.42 0.73 16 35 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 38 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 39 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 40 H 0.09 0.66 7.55 -51.93 -0.39 0.27 16 41 H 0.05 0.32 8.01 -51.93 -0.42 -0.09 16 42 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.04 0.26 7.63 -51.93 -0.40 -0.14 16 47 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 368.60 15.07 5.55 5.55 Total: -1.00 -34.14 368.60 -9.82 -43.95 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -8.88 Total: -3.85 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: -1.23 Total: -13.84 kcal Atomic # 7 Polarization: -39.51 SS G_CDS: -0.68 Total: -40.19 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.09 Total: -9.51 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -4.67 Total: 17.88 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.14 -9.82 -43.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588281697.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.800 kcal (2) G-P(sol) polarization free energy of solvation -34.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds