Wall clock time and date at job start Tue Mar 31 2020 05:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09001 * 109.47085 * 2 1 4 4 C 1.53005 * 109.47325 * 240.00516 * 2 1 3 5 5 N 1.46503 * 109.47144 * 64.56040 * 4 2 1 6 6 C 1.34775 * 120.00380 * 185.19075 * 5 4 2 7 7 O 1.21283 * 119.99274 * 0.02562 * 6 5 4 8 8 C 1.50699 * 120.00380 * 180.02562 * 6 5 4 9 9 C 1.52994 * 109.47022 * 179.97438 * 8 6 5 10 10 C 1.53002 * 109.46943 * 179.97438 * 9 8 6 11 11 C 1.53002 * 109.47157 * 179.97438 * 10 9 8 12 12 C 1.50701 * 109.47153 * 180.02562 * 11 10 9 13 13 H 1.07995 * 119.99926 * 359.97438 * 12 11 10 14 14 C 1.37878 * 119.99740 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99725 * 180.02562 * 14 12 11 16 16 Si 1.86797 * 120.00255 * 0.02562 * 14 12 11 17 17 H 1.48496 * 109.47337 * 90.00036 * 16 14 12 18 18 H 1.48499 * 109.47215 * 210.00069 * 16 14 12 19 19 H 1.48502 * 109.47331 * 330.00190 * 16 14 12 20 20 N 1.46894 * 109.47225 * 120.00692 * 2 1 3 21 21 C 1.48539 * 111.00274 * 179.38389 * 20 2 1 22 22 C 1.54934 * 103.22970 * 159.71622 * 21 20 2 23 23 C 1.54601 * 102.92291 * 322.58579 * 22 21 20 24 24 C 1.47905 * 110.99539 * 296.77482 * 20 2 1 25 25 H 1.09001 * 109.47077 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47323 * 299.99776 * 1 2 3 27 27 H 1.09005 * 109.47153 * 59.99820 * 1 2 3 28 28 H 1.09001 * 109.47065 * 184.56136 * 4 2 1 29 29 H 1.08995 * 109.46938 * 304.56566 * 4 2 1 30 30 H 0.96998 * 120.00046 * 5.19625 * 5 4 2 31 31 H 1.09004 * 109.46616 * 299.99941 * 8 6 5 32 32 H 1.08997 * 109.46786 * 59.99729 * 8 6 5 33 33 H 1.08997 * 109.47816 * 300.00137 * 9 8 6 34 34 H 1.09005 * 109.47170 * 59.99695 * 9 8 6 35 35 H 1.09003 * 109.47477 * 299.99980 * 10 9 8 36 36 H 1.08997 * 109.46912 * 60.00379 * 10 9 8 37 37 H 1.08997 * 109.47264 * 300.00936 * 11 10 9 38 38 H 1.09005 * 109.47055 * 60.00080 * 11 10 9 39 39 H 0.96998 * 120.00009 * 179.97438 * 15 14 12 40 40 H 1.08997 * 110.66198 * 278.15561 * 21 20 2 41 41 H 1.08999 * 110.66605 * 41.27826 * 21 20 2 42 42 H 1.09002 * 110.72556 * 204.22127 * 22 21 20 43 43 H 1.09006 * 110.87417 * 81.01549 * 22 21 20 44 44 H 1.08997 * 110.30313 * 263.03951 * 23 22 21 45 45 H 1.08997 * 110.30797 * 140.87419 * 23 22 21 46 46 H 1.09001 * 109.92056 * 333.50786 * 24 20 2 47 47 H 1.08996 * 109.91560 * 94.80977 * 24 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 7 1.6434 0.0301 -2.4429 6 6 1.8933 -0.4713 -3.6687 7 8 2.4461 -1.5447 -3.7836 8 6 1.4859 0.3017 -4.8965 9 6 1.8826 -0.4834 -6.1484 10 6 1.4684 0.3011 -7.3949 11 6 1.8657 -0.4836 -8.6468 12 6 1.4583 0.2894 -9.8746 13 1 0.9649 1.2446 -9.7723 14 6 1.7144 -0.2234 -11.1286 15 7 1.3593 0.4514 -12.2001 16 14 2.5659 -1.8766 -11.3056 17 1 1.5473 -2.9564 -11.3443 18 1 3.3547 -1.8950 -12.5636 19 1 3.4726 -2.0928 -10.1496 20 7 2.0196 -0.6926 1.1993 21 6 3.5044 -0.7254 1.2262 22 6 3.8263 -0.9820 2.7198 23 6 2.7449 -0.1560 3.4535 24 6 1.6098 0.0214 2.4281 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 3.1269 -0.7924 -1.2094 29 1 1.6114 -1.7224 -1.2912 30 1 1.2010 0.8884 -2.3510 31 1 0.4064 0.4529 -4.8890 32 1 1.9883 1.2689 -4.9002 33 1 2.9620 -0.6344 -6.1557 34 1 1.3805 -1.4509 -6.1448 35 1 0.3888 0.4517 -7.3874 36 1 1.9702 1.2687 -7.3986 37 1 2.9452 -0.6339 -8.6540 38 1 1.3642 -1.4515 -8.6433 39 1 1.5399 0.0909 -13.0823 40 1 3.8824 -1.5380 0.6059 41 1 3.9162 0.2305 0.9026 42 1 4.8236 -0.6184 2.9675 43 1 3.7326 -2.0409 2.9610 44 1 3.1447 0.8145 3.7471 45 1 2.3837 -0.6975 4.3279 46 1 1.4666 1.0802 2.2121 47 1 0.6872 -0.4090 2.8174 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588281697.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:03 Heat of formation + Delta-G solvation = -85.294896 kcal Electronic energy + Delta-G solvation = -21681.446421 eV Core-core repulsion = 18475.913642 eV Total energy + Delta-G solvation = -3205.532779 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.98157 -40.01522 -36.89806 -36.40483 -34.60206 -33.90152 -31.89169 -30.23871 -29.76768 -28.14893 -26.67363 -23.88423 -23.03241 -21.77782 -21.66877 -21.47720 -20.89909 -18.85253 -18.02643 -17.55882 -17.00388 -16.62815 -16.44297 -16.21269 -16.07158 -15.28707 -15.10274 -14.78105 -14.55750 -14.06404 -13.99385 -13.86657 -13.69155 -13.53959 -13.47075 -13.19005 -12.84402 -12.47894 -12.33184 -12.27668 -12.08675 -12.05917 -11.98469 -11.87793 -11.75428 -11.51409 -11.43794 -11.34093 -11.26065 -10.83242 -10.75788 -10.11614 -9.44192 -8.29569 -6.32443 1.34844 1.36190 1.49157 1.65663 2.10097 2.35983 3.03883 3.05742 3.58811 3.70669 3.80533 3.87594 4.01728 4.05036 4.12029 4.16735 4.22155 4.32928 4.56515 4.61251 4.65453 4.66111 4.71957 4.75934 4.79445 4.84421 4.86940 4.89230 4.95966 5.01577 5.06228 5.15506 5.15667 5.21300 5.27382 5.29981 5.31808 5.40892 5.61297 5.66392 5.69065 5.89194 6.03882 6.29772 6.54042 6.75439 7.27005 7.32295 8.86911 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.045793 B = 0.002182 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.301604 B =12827.174714 C =13182.832926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.071 3.929 3 H 0.060 0.940 4 C 0.129 3.871 5 N -0.717 5.717 6 C 0.512 3.488 7 O -0.587 6.587 8 C -0.130 4.130 9 C -0.098 4.098 10 C -0.094 4.094 11 C -0.018 4.018 12 C -0.530 4.530 13 H 0.038 0.962 14 C 0.003 3.997 15 N -0.950 5.950 16 Si 0.947 3.053 17 H -0.267 1.267 18 H -0.281 1.281 19 H -0.253 1.253 20 N -0.526 5.526 21 C 0.027 3.973 22 C -0.123 4.123 23 C -0.130 4.130 24 C 0.037 3.963 25 H 0.053 0.947 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.416 0.584 31 H 0.118 0.882 32 H 0.117 0.883 33 H 0.050 0.950 34 H 0.051 0.949 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.013 0.987 38 H 0.012 0.988 39 H 0.266 0.734 40 H 0.073 0.927 41 H 0.048 0.952 42 H 0.082 0.918 43 H 0.070 0.930 44 H 0.075 0.925 45 H 0.078 0.922 46 H 0.052 0.948 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.916 1.632 35.833 35.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.038 4.038 3 H 0.077 0.923 4 C 0.005 3.995 5 N -0.370 5.370 6 C 0.301 3.699 7 O -0.467 6.467 8 C -0.170 4.170 9 C -0.136 4.136 10 C -0.131 4.131 11 C -0.055 4.055 12 C -0.568 4.568 13 H 0.056 0.944 14 C -0.194 4.194 15 N -0.591 5.591 16 Si 0.771 3.229 17 H -0.192 1.192 18 H -0.207 1.207 19 H -0.177 1.177 20 N -0.251 5.251 21 C -0.100 4.100 22 C -0.161 4.161 23 C -0.168 4.168 24 C -0.091 4.091 25 H 0.072 0.928 26 H 0.088 0.912 27 H 0.091 0.909 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.254 0.746 31 H 0.136 0.864 32 H 0.135 0.865 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.032 0.968 38 H 0.031 0.969 39 H 0.075 0.925 40 H 0.091 0.909 41 H 0.066 0.934 42 H 0.100 0.900 43 H 0.089 0.911 44 H 0.094 0.906 45 H 0.097 0.903 46 H 0.070 0.930 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.074 0.356 35.576 35.594 hybrid contribution 0.431 0.482 -0.775 1.009 sum 1.505 0.838 34.800 34.843 Atomic orbital electron populations 1.21853 0.92672 1.02601 1.02887 1.21912 0.97075 0.95690 0.89102 0.92263 1.21221 0.99106 0.95521 0.83650 1.45834 1.61903 1.24597 1.04712 1.21187 0.77444 0.85646 0.85665 1.90695 1.44156 1.24403 1.87481 1.21678 1.04958 1.00179 0.90146 1.21284 1.00826 0.98506 0.93021 1.21341 1.00619 0.98447 0.92717 1.19587 0.96104 0.95883 0.93964 1.21544 1.38101 1.05814 0.91321 0.94407 1.25998 0.96219 1.01566 0.95587 1.70060 1.49633 1.40813 0.98578 0.85694 0.79482 0.79655 0.78054 1.19230 1.20701 1.17680 1.64739 1.09324 1.49387 1.01661 1.23304 0.87897 1.00634 0.98205 1.22479 0.99302 1.00955 0.93322 1.22423 0.95219 1.00853 0.98297 1.22902 0.99393 0.97037 0.89752 0.92759 0.91240 0.90935 0.92769 0.92609 0.74622 0.86411 0.86494 0.93118 0.93044 0.92348 0.92395 0.96842 0.96939 0.92529 0.90858 0.93375 0.89985 0.91086 0.90587 0.90279 0.92967 0.90056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.02 71.98 0.65 -0.92 16 2 C 0.07 0.92 1.86 44.91 0.08 1.00 16 3 H 0.06 0.65 7.99 -2.39 -0.02 0.63 16 4 C 0.13 2.38 5.02 86.38 0.43 2.81 16 5 N -0.72 -12.47 5.21 -463.05 -2.41 -14.88 16 6 C 0.51 13.05 7.83 87.66 0.69 13.73 16 7 O -0.59 -20.97 15.98 -3.04 -0.05 -21.02 16 8 C -0.13 -2.95 5.70 29.85 0.17 -2.78 16 9 C -0.10 -3.21 4.50 30.59 0.14 -3.07 16 10 C -0.09 -3.61 5.15 30.60 0.16 -3.45 16 11 C -0.02 -0.88 4.04 29.85 0.12 -0.76 16 12 C -0.53 -31.40 9.66 25.60 0.25 -31.15 16 13 H 0.04 2.41 7.99 -2.91 -0.02 2.39 16 14 C 0.00 0.18 5.47 84.65 0.46 0.64 16 15 N -0.95 -60.73 13.96 21.45 0.30 -60.43 16 16 Si 0.95 46.33 27.47 68.60 1.88 48.22 16 17 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 18 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 19 H -0.25 -11.80 6.54 99.48 0.65 -11.15 16 20 N -0.53 -7.30 5.11 -857.86 -4.38 -11.68 16 21 C 0.03 0.36 5.38 86.65 0.47 0.83 16 22 C -0.12 -1.24 7.06 31.80 0.22 -1.02 16 23 C -0.13 -1.09 6.93 31.48 0.22 -0.87 16 24 C 0.04 0.37 5.48 86.45 0.47 0.85 16 25 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.07 0.62 7.25 -2.39 -0.02 0.60 16 27 H 0.07 0.65 7.27 -2.38 -0.02 0.64 16 28 H 0.05 1.12 6.69 -2.39 -0.02 1.11 16 29 H 0.06 1.29 8.13 -2.39 -0.02 1.27 16 30 H 0.42 4.33 7.81 -92.71 -0.72 3.61 16 31 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.05 1.78 8.10 -2.39 -0.02 1.76 16 34 H 0.05 1.80 8.10 -2.38 -0.02 1.78 16 35 H 0.06 2.17 8.14 -2.39 -0.02 2.16 16 36 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.01 0.65 7.20 -2.39 -0.02 0.64 16 38 H 0.01 0.60 7.57 -2.38 -0.02 0.58 16 39 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 40 H 0.07 1.14 7.55 -2.39 -0.02 1.12 16 41 H 0.05 0.61 8.01 -2.39 -0.02 0.59 16 42 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 44 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 45 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 46 H 0.05 0.46 7.63 -2.39 -0.02 0.44 16 47 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -74.91 368.60 0.01 -74.90 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: 0.13 Total: 9.06 kcal Atomic # 6 Polarization: -28.70 SS G_CDS: 4.53 Total: -24.17 kcal Atomic # 7 Polarization: -80.50 SS G_CDS: -6.49 Total: -86.99 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -0.05 Total: -21.02 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 1.88 Total: 48.22 kcal Total: -74.91 0.01 -74.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588281697.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.394 kcal (2) G-P(sol) polarization free energy of solvation -74.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds