Wall clock time and date at job start Tue Mar 31 2020 05:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.46944 * 2 1 4 4 C 1.53002 * 109.47063 * 120.00045 * 2 1 3 5 5 N 1.46499 * 109.46828 * 175.00181 * 4 2 1 6 6 C 1.34779 * 119.99829 * 180.02562 * 5 4 2 7 7 O 1.21281 * 119.99810 * 359.97438 * 6 5 4 8 8 C 1.50701 * 119.99761 * 179.97438 * 6 5 4 9 9 C 1.53002 * 109.46760 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.46904 * 180.02562 * 9 8 6 11 11 C 1.53002 * 109.46904 * 179.97438 * 10 9 8 12 12 C 1.50706 * 109.47038 * 179.97438 * 11 10 9 13 13 H 1.07994 * 119.99824 * 0.02562 * 12 11 10 14 14 C 1.37872 * 119.99783 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00400 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99696 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47395 * 89.99863 * 16 14 12 18 18 H 1.48500 * 109.47213 * 210.00072 * 16 14 12 19 19 H 1.48500 * 109.47442 * 329.99787 * 16 14 12 20 20 N 1.46901 * 109.46841 * 240.00177 * 2 1 3 21 21 C 1.47844 * 111.00155 * 301.17373 * 20 2 1 22 22 C 1.54909 * 104.79297 * 146.36441 * 21 20 2 23 23 C 1.55134 * 101.65459 * 322.93380 * 22 21 20 24 24 C 1.47444 * 111.00195 * 62.02386 * 20 2 1 25 25 H 1.08999 * 109.47619 * 66.91834 * 1 2 3 26 26 H 1.08999 * 109.47057 * 186.91707 * 1 2 3 27 27 H 1.09001 * 109.47081 * 306.91830 * 1 2 3 28 28 H 1.08990 * 109.47313 * 294.99920 * 4 2 1 29 29 H 1.09004 * 109.46950 * 55.00325 * 4 2 1 30 30 H 0.97005 * 120.00233 * 359.97438 * 5 4 2 31 31 H 1.08990 * 109.47231 * 299.99836 * 8 6 5 32 32 H 1.09004 * 109.47035 * 60.00242 * 8 6 5 33 33 H 1.09000 * 109.47432 * 299.99883 * 9 8 6 34 34 H 1.09000 * 109.47321 * 60.00115 * 9 8 6 35 35 H 1.09002 * 109.47082 * 299.99594 * 10 9 8 36 36 H 1.08994 * 109.47538 * 60.00081 * 10 9 8 37 37 H 1.09000 * 109.47432 * 299.99729 * 11 10 9 38 38 H 1.09004 * 109.46950 * 60.00280 * 11 10 9 39 39 H 0.97003 * 120.00009 * 179.97438 * 15 14 12 40 40 H 1.08999 * 110.37090 * 27.54024 * 21 20 2 41 41 H 1.08999 * 110.37230 * 265.19709 * 21 20 2 42 42 H 1.08999 * 110.99083 * 204.83518 * 22 21 20 43 43 H 1.09008 * 110.98760 * 81.02679 * 22 21 20 44 44 H 1.09001 * 110.70640 * 154.03558 * 23 22 21 45 45 H 1.09001 * 110.70870 * 277.26996 * 23 22 21 46 46 H 1.09000 * 109.88976 * 117.33423 * 24 20 2 47 47 H 1.09004 * 109.88261 * 356.14160 * 24 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5000 -0.8263 1.1905 6 6 4.1730 -1.4291 2.1907 7 8 3.5699 -1.8842 3.1394 8 6 5.6749 -1.5377 2.1300 9 6 6.1849 -2.2589 3.3793 10 6 7.7097 -2.3686 3.3180 11 6 8.2198 -3.0892 4.5677 12 6 9.7217 -3.1978 4.5070 13 1 10.2586 -2.7930 3.6620 14 6 10.4101 -3.8140 5.5304 15 7 9.7562 -4.3065 6.5597 16 14 12.2718 -3.9480 5.4556 17 1 12.8802 -2.7552 6.0979 18 1 12.7091 -5.1731 6.1718 19 1 12.7062 -4.0221 4.0375 20 7 2.0196 -0.6925 -1.1995 21 6 1.5226 -2.0840 -1.2479 22 6 1.3265 -2.3817 -2.7554 23 6 0.8062 -1.0173 -3.2792 24 6 1.5869 0.0036 -2.4251 25 1 -0.3634 0.4029 -0.9454 26 1 -0.3633 -1.0202 0.1238 27 1 -0.3633 0.6173 0.8216 28 1 1.7517 -0.1584 2.1369 29 1 1.6054 -1.7199 1.2951 30 1 3.9824 -0.4627 0.4315 31 1 5.9629 -2.1005 1.2422 32 1 6.1098 -0.5392 2.0843 33 1 5.8969 -1.6957 4.2670 34 1 5.7500 -3.2573 3.4255 35 1 7.9981 -2.9316 2.4304 36 1 8.1443 -1.3701 3.2721 37 1 7.9314 -2.5258 5.4551 38 1 7.7852 -4.0878 4.6140 39 1 10.2406 -4.7404 7.2795 40 1 0.5735 -2.1666 -0.7183 41 1 2.2580 -2.7648 -0.8191 42 1 0.5847 -3.1662 -2.9052 43 1 2.2728 -2.6461 -3.2275 44 1 1.0416 -0.8953 -4.3365 45 1 -0.2662 -0.9225 -3.1086 46 1 2.4573 0.3597 -2.9763 47 1 0.9403 0.8422 -2.1666 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588281698.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:06 Heat of formation + Delta-G solvation = -61.667264 kcal Electronic energy + Delta-G solvation = -21983.412488 eV Core-core repulsion = 18778.904280 eV Total energy + Delta-G solvation = -3204.508208 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.25435 -39.17839 -35.54757 -34.73286 -33.06688 -32.51360 -29.88688 -29.36786 -29.29109 -26.84457 -25.08511 -23.00603 -22.12141 -21.49782 -20.20955 -19.93969 -19.70493 -17.09522 -16.55690 -16.26841 -16.10712 -15.93945 -15.47903 -14.80661 -14.41751 -14.31115 -14.06027 -13.67272 -13.31889 -12.97820 -12.89422 -12.70041 -12.50893 -12.30615 -12.02112 -11.66623 -11.61914 -11.57768 -11.51425 -11.44900 -11.18678 -10.98582 -10.93287 -10.47296 -10.44391 -10.33499 -9.69313 -9.54265 -9.15452 -8.98774 -8.92465 -8.70804 -8.26100 -5.90924 -3.93198 2.88068 3.22809 3.37093 3.42901 3.46370 3.59810 4.15707 4.26459 4.45598 4.52427 4.53685 4.64030 4.82295 4.91884 5.06269 5.07735 5.15372 5.18397 5.27311 5.37742 5.44055 5.44619 5.47085 5.48396 5.53168 5.56905 5.59506 5.68530 5.79226 5.84862 5.99188 6.23256 6.40060 6.45804 6.55462 6.62908 6.68506 6.92514 7.10625 7.27178 7.65921 7.79380 7.96169 8.11167 8.43617 8.53073 9.14663 9.70168 11.20429 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.033819 B = 0.002323 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.734887 B =12049.465068 C =12453.875509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.062 3.938 3 H 0.090 0.910 4 C 0.129 3.871 5 N -0.726 5.726 6 C 0.510 3.490 7 O -0.543 6.543 8 C -0.138 4.138 9 C -0.103 4.103 10 C -0.110 4.110 11 C 0.019 3.981 12 C -0.519 4.519 13 H 0.054 0.946 14 C 0.054 3.946 15 N -0.896 5.896 16 Si 0.891 3.109 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.274 1.274 20 N -0.522 5.522 21 C 0.035 3.965 22 C -0.130 4.130 23 C -0.142 4.142 24 C 0.039 3.961 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.406 0.594 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.046 0.954 36 H 0.046 0.954 37 H 0.015 0.985 38 H 0.016 0.984 39 H 0.259 0.741 40 H 0.054 0.946 41 H 0.081 0.919 42 H 0.072 0.928 43 H 0.076 0.924 44 H 0.073 0.927 45 H 0.065 0.935 46 H 0.078 0.922 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.352 10.084 -21.043 31.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.047 4.047 3 H 0.108 0.892 4 C 0.005 3.995 5 N -0.380 5.380 6 C 0.297 3.703 7 O -0.419 6.419 8 C -0.177 4.177 9 C -0.141 4.141 10 C -0.148 4.148 11 C -0.018 4.018 12 C -0.557 4.557 13 H 0.072 0.928 14 C -0.146 4.146 15 N -0.535 5.535 16 Si 0.719 3.281 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.199 1.199 20 N -0.246 5.246 21 C -0.092 4.092 22 C -0.168 4.168 23 C -0.180 4.180 24 C -0.089 4.089 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.241 0.759 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.034 0.966 38 H 0.034 0.966 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.100 0.900 42 H 0.090 0.910 43 H 0.094 0.906 44 H 0.092 0.908 45 H 0.083 0.917 46 H 0.097 0.903 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -21.215 9.667 -20.147 30.813 hybrid contribution 0.283 0.111 -0.378 0.485 sum -20.932 9.778 -20.525 30.904 Atomic orbital electron populations 1.22433 0.96446 1.02839 1.02747 1.22138 0.93483 0.98757 0.90357 0.89178 1.21294 0.81483 1.00469 0.96300 1.45927 1.06904 1.60911 1.24233 1.21084 0.90780 0.76769 0.81650 1.90694 1.70593 1.47307 1.33344 1.21764 0.90451 1.03232 1.02301 1.21438 0.97178 1.00261 0.95186 1.21647 0.92030 1.00219 1.00882 1.19103 0.95353 0.95437 0.91879 1.21294 0.92438 1.36777 1.05211 0.92760 1.25046 0.98301 0.95708 0.95581 1.69979 1.35382 1.38925 1.09239 0.86612 0.86004 0.77442 0.78027 1.20732 1.21288 1.19930 1.63770 1.57310 1.02158 1.01350 1.23141 0.99517 0.90056 0.96504 1.22705 1.01685 0.96963 0.95430 1.22779 0.99717 0.95317 1.00219 1.22843 0.98782 0.96448 0.90788 0.91830 0.91807 0.91514 0.91325 0.91829 0.75851 0.89225 0.89302 0.91911 0.91908 0.93504 0.93518 0.96612 0.96604 0.93084 0.92786 0.90031 0.90960 0.90562 0.90803 0.91674 0.90345 0.92375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.08 8.55 37.16 0.32 -0.76 16 2 C 0.06 0.43 2.38 -67.71 -0.16 0.27 16 3 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 4 C 0.13 1.25 4.87 -4.04 -0.02 1.23 16 5 N -0.73 -7.85 5.39 -60.29 -0.32 -8.18 16 6 C 0.51 7.48 7.83 -10.98 -0.09 7.40 16 7 O -0.54 -10.31 15.98 5.56 0.09 -10.22 16 8 C -0.14 -1.94 5.70 -27.88 -0.16 -2.10 16 9 C -0.10 -1.92 4.50 -26.73 -0.12 -2.04 16 10 C -0.11 -2.34 5.15 -26.73 -0.14 -2.48 16 11 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 12 C -0.52 -15.22 9.11 -34.44 -0.31 -15.54 16 13 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 14 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 15 N -0.90 -27.93 13.29 55.43 0.74 -27.19 16 16 Si 0.89 22.20 29.54 -169.99 -5.02 17.18 16 17 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 18 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 19 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 20 N -0.52 -3.69 4.63 -223.29 -1.03 -4.73 16 21 C 0.04 0.26 5.28 -2.30 -0.01 0.25 16 22 C -0.13 -0.79 7.08 -24.60 -0.17 -0.96 16 23 C -0.14 -0.74 6.94 -24.91 -0.17 -0.91 16 24 C 0.04 0.23 6.25 -2.84 -0.02 0.21 16 25 H 0.06 0.33 6.29 -51.93 -0.33 0.01 16 26 H 0.06 0.40 6.24 -51.93 -0.32 0.07 16 27 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.69 7.33 -51.93 -0.38 0.31 16 30 H 0.41 3.64 8.14 -40.82 -0.33 3.31 16 31 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 34 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 35 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.26 7.60 8.31 -40.82 -0.34 7.27 16 40 H 0.05 0.39 5.46 -51.93 -0.28 0.11 16 41 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.08 0.49 8.14 -51.92 -0.42 0.07 16 44 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.06 0.30 6.18 -51.93 -0.32 -0.02 16 LS Contribution 368.24 15.07 5.55 5.55 Total: -1.00 -33.64 368.24 -9.99 -43.63 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -8.69 Total: -2.49 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: -1.29 Total: -13.55 kcal Atomic # 7 Polarization: -39.48 SS G_CDS: -0.62 Total: -40.10 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.09 Total: -10.22 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.64 -9.99 -43.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588281698.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.039 kcal (2) G-P(sol) polarization free energy of solvation -33.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds