Wall clock time and date at job start Tue Mar 31 2020 05:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.46944 * 2 1 4 4 C 1.53002 * 109.47063 * 120.00045 * 2 1 3 5 5 N 1.46499 * 109.46828 * 175.00181 * 4 2 1 6 6 C 1.34779 * 119.99829 * 180.02562 * 5 4 2 7 7 O 1.21281 * 119.99810 * 359.97438 * 6 5 4 8 8 C 1.50701 * 119.99761 * 179.97438 * 6 5 4 9 9 C 1.53002 * 109.46760 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.46904 * 180.02562 * 9 8 6 11 11 C 1.53002 * 109.46904 * 179.97438 * 10 9 8 12 12 C 1.50706 * 109.47038 * 179.97438 * 11 10 9 13 13 H 1.07994 * 119.99824 * 0.02562 * 12 11 10 14 14 C 1.37872 * 119.99783 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00400 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99696 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47395 * 89.99863 * 16 14 12 18 18 H 1.48500 * 109.47213 * 210.00072 * 16 14 12 19 19 H 1.48500 * 109.47442 * 329.99787 * 16 14 12 20 20 N 1.46901 * 109.46841 * 240.00177 * 2 1 3 21 21 C 1.47844 * 111.00155 * 301.17373 * 20 2 1 22 22 C 1.54909 * 104.79297 * 146.36441 * 21 20 2 23 23 C 1.55134 * 101.65459 * 322.93380 * 22 21 20 24 24 C 1.47444 * 111.00195 * 62.02386 * 20 2 1 25 25 H 1.08999 * 109.47619 * 66.91834 * 1 2 3 26 26 H 1.08999 * 109.47057 * 186.91707 * 1 2 3 27 27 H 1.09001 * 109.47081 * 306.91830 * 1 2 3 28 28 H 1.08990 * 109.47313 * 294.99920 * 4 2 1 29 29 H 1.09004 * 109.46950 * 55.00325 * 4 2 1 30 30 H 0.97005 * 120.00233 * 359.97438 * 5 4 2 31 31 H 1.08990 * 109.47231 * 299.99836 * 8 6 5 32 32 H 1.09004 * 109.47035 * 60.00242 * 8 6 5 33 33 H 1.09000 * 109.47432 * 299.99883 * 9 8 6 34 34 H 1.09000 * 109.47321 * 60.00115 * 9 8 6 35 35 H 1.09002 * 109.47082 * 299.99594 * 10 9 8 36 36 H 1.08994 * 109.47538 * 60.00081 * 10 9 8 37 37 H 1.09000 * 109.47432 * 299.99729 * 11 10 9 38 38 H 1.09004 * 109.46950 * 60.00280 * 11 10 9 39 39 H 0.97003 * 120.00009 * 179.97438 * 15 14 12 40 40 H 1.08999 * 110.37090 * 27.54024 * 21 20 2 41 41 H 1.08999 * 110.37230 * 265.19709 * 21 20 2 42 42 H 1.08999 * 110.99083 * 204.83518 * 22 21 20 43 43 H 1.09008 * 110.98760 * 81.02679 * 22 21 20 44 44 H 1.09001 * 110.70640 * 154.03558 * 23 22 21 45 45 H 1.09001 * 110.70870 * 277.26996 * 23 22 21 46 46 H 1.09000 * 109.88976 * 117.33423 * 24 20 2 47 47 H 1.09004 * 109.88261 * 356.14160 * 24 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5000 -0.8263 1.1905 6 6 4.1730 -1.4291 2.1907 7 8 3.5699 -1.8842 3.1394 8 6 5.6749 -1.5377 2.1300 9 6 6.1849 -2.2589 3.3793 10 6 7.7097 -2.3686 3.3180 11 6 8.2198 -3.0892 4.5677 12 6 9.7217 -3.1978 4.5070 13 1 10.2586 -2.7930 3.6620 14 6 10.4101 -3.8140 5.5304 15 7 9.7562 -4.3065 6.5597 16 14 12.2718 -3.9480 5.4556 17 1 12.8802 -2.7552 6.0979 18 1 12.7091 -5.1731 6.1718 19 1 12.7062 -4.0221 4.0375 20 7 2.0196 -0.6925 -1.1995 21 6 1.5226 -2.0840 -1.2479 22 6 1.3265 -2.3817 -2.7554 23 6 0.8062 -1.0173 -3.2792 24 6 1.5869 0.0036 -2.4251 25 1 -0.3634 0.4029 -0.9454 26 1 -0.3633 -1.0202 0.1238 27 1 -0.3633 0.6173 0.8216 28 1 1.7517 -0.1584 2.1369 29 1 1.6054 -1.7199 1.2951 30 1 3.9824 -0.4627 0.4315 31 1 5.9629 -2.1005 1.2422 32 1 6.1098 -0.5392 2.0843 33 1 5.8969 -1.6957 4.2670 34 1 5.7500 -3.2573 3.4255 35 1 7.9981 -2.9316 2.4304 36 1 8.1443 -1.3701 3.2721 37 1 7.9314 -2.5258 5.4551 38 1 7.7852 -4.0878 4.6140 39 1 10.2406 -4.7404 7.2795 40 1 0.5735 -2.1666 -0.7183 41 1 2.2580 -2.7648 -0.8191 42 1 0.5847 -3.1662 -2.9052 43 1 2.2728 -2.6461 -3.2275 44 1 1.0416 -0.8953 -4.3365 45 1 -0.2662 -0.9225 -3.1086 46 1 2.4573 0.3597 -2.9763 47 1 0.9403 0.8422 -2.1666 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588281698.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:06 Heat of formation + Delta-G solvation = -84.191270 kcal Electronic energy + Delta-G solvation = -21984.389202 eV Core-core repulsion = 18778.904280 eV Total energy + Delta-G solvation = -3205.484923 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.03599 -40.12661 -36.73970 -36.16042 -34.59379 -33.82884 -31.50908 -30.02173 -29.78985 -28.10549 -26.58319 -24.06998 -23.42083 -21.95868 -21.75319 -21.19692 -20.45023 -18.41380 -17.91362 -17.42287 -17.07443 -16.75185 -16.60543 -16.46635 -15.61975 -15.34242 -14.89467 -14.57293 -14.52418 -14.10859 -14.01471 -13.58563 -13.46661 -13.44439 -13.23994 -13.14232 -12.80151 -12.76627 -12.33339 -12.19563 -12.13725 -12.10715 -12.04855 -11.97393 -11.79174 -11.44189 -11.36381 -11.34173 -11.14644 -10.72709 -10.54203 -10.00720 -9.24642 -8.17773 -6.30027 1.40815 1.43400 1.54498 1.71914 2.28366 2.43065 3.00738 3.14719 3.60991 3.78178 3.89303 3.94962 4.04514 4.11466 4.13205 4.17590 4.30351 4.39836 4.55166 4.58904 4.64833 4.69610 4.71349 4.77888 4.78989 4.87236 4.90914 4.95261 4.97990 5.04650 5.08160 5.17692 5.21412 5.27504 5.34833 5.38315 5.39623 5.53506 5.59490 5.79355 5.89042 6.02513 6.12035 6.26390 6.67426 6.88358 7.36284 7.39482 8.94546 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.033819 B = 0.002323 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.734887 B =12049.465068 C =12453.875509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.071 3.929 3 H 0.101 0.899 4 C 0.128 3.872 5 N -0.706 5.706 6 C 0.508 3.492 7 O -0.595 6.595 8 C -0.127 4.127 9 C -0.095 4.095 10 C -0.095 4.095 11 C 0.018 3.982 12 C -0.541 4.541 13 H 0.066 0.934 14 C -0.008 4.008 15 N -0.938 5.938 16 Si 0.971 3.029 17 H -0.271 1.271 18 H -0.284 1.284 19 H -0.259 1.259 20 N -0.529 5.529 21 C 0.034 3.966 22 C -0.128 4.128 23 C -0.137 4.137 24 C 0.038 3.962 25 H 0.074 0.926 26 H 0.057 0.943 27 H 0.070 0.930 28 H 0.062 0.938 29 H 0.049 0.951 30 H 0.419 0.581 31 H 0.115 0.885 32 H 0.117 0.883 33 H 0.042 0.958 34 H 0.041 0.959 35 H 0.060 0.940 36 H 0.061 0.939 37 H -0.016 1.016 38 H -0.016 1.016 39 H 0.263 0.737 40 H 0.053 0.947 41 H 0.061 0.939 42 H 0.077 0.923 43 H 0.071 0.929 44 H 0.082 0.918 45 H 0.070 0.930 46 H 0.080 0.920 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.747 11.610 -23.639 33.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.038 4.038 3 H 0.119 0.881 4 C 0.004 3.996 5 N -0.358 5.358 6 C 0.296 3.704 7 O -0.476 6.476 8 C -0.167 4.167 9 C -0.133 4.133 10 C -0.133 4.133 11 C -0.019 4.019 12 C -0.579 4.579 13 H 0.084 0.916 14 C -0.205 4.205 15 N -0.579 5.579 16 Si 0.795 3.205 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.183 1.183 20 N -0.254 5.254 21 C -0.093 4.093 22 C -0.167 4.167 23 C -0.175 4.175 24 C -0.089 4.089 25 H 0.093 0.907 26 H 0.075 0.925 27 H 0.089 0.911 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.257 0.743 31 H 0.133 0.867 32 H 0.135 0.865 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.003 0.997 38 H 0.002 0.998 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.079 0.921 42 H 0.096 0.904 43 H 0.090 0.910 44 H 0.101 0.899 45 H 0.088 0.912 46 H 0.098 0.902 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -20.619 11.227 -22.806 32.731 hybrid contribution 0.039 -0.373 0.440 0.578 sum -20.580 10.854 -22.367 32.274 Atomic orbital electron populations 1.22391 0.95412 1.02655 1.03555 1.22055 0.94179 0.98611 0.88970 0.88091 1.21373 0.80490 1.00028 0.97732 1.45760 1.07532 1.59126 1.23377 1.21167 0.91070 0.76519 0.81607 1.90683 1.71506 1.49841 1.35533 1.21641 0.90103 1.04443 1.00482 1.21235 0.95429 0.99567 0.97081 1.21447 0.93529 1.00188 0.98120 1.19064 0.95086 0.94031 0.93701 1.21754 0.93474 1.36921 1.05748 0.91573 1.26111 1.04330 0.95070 0.95003 1.70138 1.37853 1.39730 1.10160 0.85365 0.78697 0.77663 0.78811 1.19668 1.20921 1.18313 1.63735 1.57658 1.02079 1.01908 1.23086 0.98828 0.90054 0.97371 1.22690 1.01718 0.97850 0.94393 1.22762 0.99884 0.94286 1.00591 1.22885 0.99155 0.96699 0.90144 0.90681 0.92457 0.91065 0.91993 0.93253 0.74343 0.86728 0.86513 0.93904 0.94029 0.92151 0.92051 0.99714 0.99756 0.92857 0.92841 0.92055 0.90407 0.91049 0.89911 0.91158 0.90186 0.91411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.80 8.55 71.98 0.62 -1.18 16 2 C 0.07 0.86 2.38 44.91 0.11 0.97 16 3 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 4 C 0.13 2.40 4.87 86.38 0.42 2.82 16 5 N -0.71 -14.39 5.39 -463.06 -2.50 -16.89 16 6 C 0.51 14.67 7.83 87.66 0.69 15.35 16 7 O -0.59 -23.24 15.98 -3.03 -0.05 -23.29 16 8 C -0.13 -3.37 5.70 29.85 0.17 -3.20 16 9 C -0.09 -3.59 4.50 30.60 0.14 -3.45 16 10 C -0.10 -4.03 5.15 30.60 0.16 -3.87 16 11 C 0.02 1.03 4.97 29.85 0.15 1.18 16 12 C -0.54 -31.93 9.11 25.60 0.23 -31.70 16 13 H 0.07 3.66 7.74 -2.91 -0.02 3.64 16 14 C -0.01 -0.48 5.46 84.65 0.46 -0.02 16 15 N -0.94 -59.88 13.29 21.45 0.28 -59.59 16 16 Si 0.97 45.40 29.54 68.60 2.03 47.42 16 17 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 18 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 19 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 20 N -0.53 -6.57 4.63 -860.36 -3.99 -10.55 16 21 C 0.03 0.47 5.28 86.77 0.46 0.93 16 22 C -0.13 -1.39 7.08 31.98 0.23 -1.16 16 23 C -0.14 -1.12 6.94 31.77 0.22 -0.90 16 24 C 0.04 0.35 6.25 86.65 0.54 0.89 16 25 H 0.07 0.60 6.29 -2.39 -0.02 0.58 16 26 H 0.06 0.66 6.24 -2.39 -0.01 0.64 16 27 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.05 1.09 7.33 -2.38 -0.02 1.07 16 30 H 0.42 6.52 8.14 -92.70 -0.75 5.77 16 31 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 32 H 0.12 2.50 8.14 -2.38 -0.02 2.48 16 33 H 0.04 1.76 8.10 -2.39 -0.02 1.74 16 34 H 0.04 1.72 8.10 -2.39 -0.02 1.70 16 35 H 0.06 2.38 8.14 -2.39 -0.02 2.37 16 36 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 37 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 38 H -0.02 -0.98 8.14 -2.38 -0.02 -1.00 16 39 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 40 H 0.05 0.74 5.46 -2.39 -0.01 0.73 16 41 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 44 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 45 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 46 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 47 H 0.07 0.50 6.18 -2.39 -0.01 0.49 16 Total: -1.00 -74.94 368.24 0.53 -74.41 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: 0.17 Total: 11.84 kcal Atomic # 6 Polarization: -27.93 SS G_CDS: 4.59 Total: -23.34 kcal Atomic # 7 Polarization: -80.84 SS G_CDS: -6.20 Total: -87.03 kcal Atomic # 8 Polarization: -23.24 SS G_CDS: -0.05 Total: -23.29 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.42 kcal Total: -74.94 0.53 -74.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588281698.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.783 kcal (2) G-P(sol) polarization free energy of solvation -74.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds