Wall clock time and date at job start Tue Mar 31 2020 05:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 N 1.46502 * 109.47005 * 64.99872 * 4 2 1 6 6 C 1.34776 * 120.00105 * 179.97438 * 5 4 2 7 7 O 1.21587 * 120.00297 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00077 * 179.97438 * 6 5 4 9 9 C 1.46505 * 119.99897 * 180.02562 * 8 6 5 10 10 C 1.53007 * 109.46800 * 180.02562 * 9 8 6 11 11 C 1.52997 * 109.47453 * 300.00207 * 10 9 8 12 12 C 1.53001 * 109.46718 * 60.00434 * 10 9 8 13 13 C 1.53000 * 109.46699 * 179.97438 * 10 9 8 14 14 C 1.50705 * 109.46875 * 180.02562 * 13 10 9 15 15 H 1.08003 * 119.99851 * 0.02562 * 14 13 10 16 16 C 1.37876 * 119.99657 * 179.97438 * 14 13 10 17 17 N 1.31509 * 120.00460 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 119.99531 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47184 * 60.00385 * 18 16 14 20 20 H 1.48495 * 109.46975 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47237 * 300.00022 * 18 16 14 22 22 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 23 23 C 1.53003 * 117.50265 * 248.62743 * 22 2 1 24 24 C 1.52998 * 117.50427 * 179.97438 * 22 2 1 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 28 28 H 1.08996 * 109.47729 * 184.99759 * 4 2 1 29 29 H 1.09001 * 109.47563 * 305.00337 * 4 2 1 30 30 H 0.96995 * 120.00463 * 0.02562 * 5 4 2 31 31 H 0.96993 * 119.99969 * 0.02562 * 8 6 5 32 32 H 1.08993 * 109.47529 * 300.00301 * 9 8 6 33 33 H 1.09003 * 109.46828 * 60.00935 * 9 8 6 34 34 H 1.09003 * 109.47090 * 60.00268 * 11 10 9 35 35 H 1.08998 * 109.46883 * 180.02562 * 11 10 9 36 36 H 1.09001 * 109.46961 * 300.00320 * 11 10 9 37 37 H 1.09002 * 109.47118 * 60.00180 * 12 10 9 38 38 H 1.08998 * 109.46882 * 179.97438 * 12 10 9 39 39 H 1.09003 * 109.47374 * 299.99456 * 12 10 9 40 40 H 1.08993 * 109.47607 * 300.00224 * 13 10 9 41 41 H 1.09003 * 109.47269 * 60.00582 * 13 10 9 42 42 H 0.97002 * 120.00241 * 179.97438 * 17 16 14 43 43 H 1.09005 * 115.54744 * 34.32833 * 22 2 1 44 44 H 1.08999 * 117.49725 * 359.97438 * 23 22 2 45 45 H 1.08994 * 117.50100 * 145.02000 * 23 22 2 46 46 H 1.08999 * 117.50259 * 214.97964 * 24 22 2 47 47 H 1.09005 * 117.49497 * 0.02562 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 7 1.6525 0.0353 -2.4423 6 6 1.9965 -0.4131 -3.6658 7 8 2.6282 -1.4458 -3.7794 8 7 1.6395 0.2827 -4.7635 9 6 2.0131 -0.2051 -6.0935 10 6 1.4901 0.7626 -7.1571 11 6 -0.0338 0.8552 -7.0572 12 6 2.1011 2.1470 -6.9314 13 6 1.8807 0.2535 -8.5460 14 6 1.3662 1.2070 -9.5935 15 1 0.8159 2.0881 -9.2981 16 6 1.5988 0.9549 -10.9289 17 7 2.2692 -0.1177 -11.2886 18 14 0.9615 2.1372 -12.2273 19 1 1.5546 3.4807 -12.0072 20 1 1.3405 1.6431 -13.5754 21 1 -0.5176 2.2273 -12.1315 22 6 2.0400 -0.7212 1.2493 23 6 2.7418 0.1228 2.3152 24 6 3.5550 -0.8285 1.4341 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 3.1263 -0.7994 -1.2055 29 1 1.6054 -1.7198 -1.2951 30 1 1.1489 0.8594 -2.3518 31 1 1.1353 1.1063 -4.6730 32 1 3.0987 -0.2707 -6.1649 33 1 1.5781 -1.1916 -6.2541 34 1 -0.3117 1.2182 -6.0676 35 1 -0.4063 1.5443 -7.8152 36 1 -0.4691 -0.1311 -7.2179 37 1 3.1868 2.0810 -7.0026 38 1 1.7289 2.8363 -7.6893 39 1 1.8232 2.5100 -5.9418 40 1 2.9664 0.1879 -8.6169 41 1 1.4458 -0.7329 -8.7070 42 1 2.4325 -0.2953 -12.2282 43 1 1.4310 -1.5584 1.5903 44 1 2.8406 1.1917 2.1263 45 1 2.5946 -0.1591 3.3577 46 1 3.9425 -1.7359 1.8973 47 1 4.1884 -0.3850 0.6658 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588300837.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:05 Heat of formation + Delta-G solvation = -37.722584 kcal Electronic energy + Delta-G solvation = -22303.541574 eV Core-core repulsion = 19100.071685 eV Total energy + Delta-G solvation = -3203.469889 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.94793 -38.54558 -37.15520 -34.99267 -33.53793 -32.25706 -31.60682 -27.31685 -26.83978 -26.48783 -25.59277 -23.39731 -22.75715 -22.40543 -20.70552 -20.19871 -18.68807 -17.60438 -16.41347 -16.06241 -15.97475 -15.41861 -14.93384 -14.65841 -14.38830 -14.15872 -13.87437 -13.57585 -13.09921 -12.92906 -12.84442 -12.71355 -12.17606 -12.04080 -11.92312 -11.73060 -11.60064 -11.22905 -11.10446 -10.98484 -10.85956 -10.60945 -10.54241 -10.37022 -10.30767 -10.24161 -9.98593 -9.84729 -9.17736 -9.10801 -8.91531 -8.49423 -8.34061 -5.98095 -3.99446 2.88389 3.32913 3.38376 3.39477 3.44887 3.47177 4.22144 4.43427 4.46775 4.50642 4.58682 4.74493 4.89165 4.99413 5.20717 5.32048 5.37194 5.47223 5.48299 5.54841 5.58129 5.67321 5.69474 5.74723 5.77858 5.79957 5.88142 6.04334 6.20468 6.25030 6.31598 6.44562 6.52690 6.63299 6.65087 6.84154 7.08160 7.09993 7.10032 7.18725 7.66360 7.79162 8.00550 8.23782 8.42430 8.84751 9.05136 9.63397 11.13305 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.044292 B = 0.002601 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.020023 B =10762.143933 C =10979.503992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.073 4.073 3 H 0.076 0.924 4 C 0.146 3.854 5 N -0.752 5.752 6 C 0.699 3.301 7 O -0.595 6.595 8 N -0.738 5.738 9 C 0.147 3.853 10 C -0.072 4.072 11 C -0.126 4.126 12 C -0.126 4.126 13 C 0.036 3.964 14 C -0.511 4.511 15 H 0.059 0.941 16 C 0.056 3.944 17 N -0.894 5.894 18 Si 0.889 3.111 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.278 1.278 22 C -0.146 4.146 23 C -0.178 4.178 24 C -0.180 4.180 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.392 0.608 31 H 0.393 0.607 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.028 0.972 35 H 0.066 0.934 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.066 0.934 39 H 0.028 0.972 40 H 0.019 0.981 41 H 0.019 0.981 42 H 0.260 0.740 43 H 0.107 0.893 44 H 0.093 0.907 45 H 0.093 0.907 46 H 0.095 0.905 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.821 2.756 24.913 25.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.092 4.092 3 H 0.095 0.905 4 C 0.022 3.978 5 N -0.409 5.409 6 C 0.398 3.602 7 O -0.473 6.473 8 N -0.393 5.393 9 C 0.024 3.976 10 C -0.073 4.073 11 C -0.183 4.183 12 C -0.183 4.183 13 C -0.002 4.002 14 C -0.549 4.549 15 H 0.077 0.923 16 C -0.145 4.145 17 N -0.534 5.534 18 Si 0.717 3.283 19 H -0.204 1.204 20 H -0.214 1.214 21 H -0.204 1.204 22 C -0.165 4.165 23 C -0.215 4.215 24 C -0.217 4.217 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.226 0.774 31 H 0.227 0.773 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.047 0.953 35 H 0.085 0.915 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.085 0.915 39 H 0.047 0.953 40 H 0.037 0.963 41 H 0.037 0.963 42 H 0.070 0.930 43 H 0.125 0.875 44 H 0.112 0.888 45 H 0.111 0.889 46 H 0.113 0.887 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.153 1.676 24.619 24.770 hybrid contribution -0.755 1.337 -0.711 1.692 sum -2.909 3.013 23.908 24.272 Atomic orbital electron populations 1.21819 0.94216 1.02402 1.01801 1.20955 0.96423 0.99237 0.92542 0.90550 1.21158 0.99912 0.94917 0.81848 1.45137 1.62097 1.28807 1.04853 1.16022 0.80091 0.83617 0.80424 1.90915 1.45530 1.24974 1.85876 1.45370 1.60398 1.27839 1.05689 1.21478 0.99710 0.97661 0.78792 1.20908 0.95077 0.94366 0.96900 1.21749 0.95546 1.01824 0.99199 1.21751 1.00388 0.97123 0.99058 1.19089 0.96877 0.96448 0.87747 1.21144 1.34860 1.08187 0.90748 0.92339 1.25016 0.95428 0.95346 0.98738 1.69954 1.40531 1.26167 1.16717 0.86708 0.79247 0.81338 0.80974 1.20352 1.21419 1.20355 1.22238 0.95201 1.01995 0.97041 1.23020 1.04688 0.97602 0.96233 1.22996 0.93778 1.01805 1.03102 0.92262 0.92399 0.92356 0.91676 0.91687 0.77406 0.77252 0.92076 0.92064 0.95323 0.91518 0.93380 0.93386 0.91517 0.95331 0.96310 0.96307 0.92990 0.87514 0.88809 0.88875 0.88682 0.88505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.05 37.16 0.34 -0.61 16 2 C -0.07 -0.52 2.58 -90.63 -0.23 -0.76 16 3 H 0.08 0.52 7.90 -51.93 -0.41 0.11 16 4 C 0.15 1.49 4.98 -4.04 -0.02 1.47 16 5 N -0.75 -8.44 5.29 -65.23 -0.34 -8.78 16 6 C 0.70 11.03 8.57 -86.92 -0.74 10.29 16 7 O -0.59 -12.07 16.34 5.29 0.09 -11.98 16 8 N -0.74 -11.03 4.96 -65.22 -0.32 -11.36 16 9 C 0.15 2.68 4.56 -4.04 -0.02 2.66 16 10 C -0.07 -1.38 0.54 -154.51 -0.08 -1.46 16 11 C -0.13 -2.22 8.05 37.16 0.30 -1.92 16 12 C -0.13 -2.22 8.05 37.16 0.30 -1.92 16 13 C 0.04 0.89 4.04 -27.88 -0.11 0.77 16 14 C -0.51 -13.60 7.65 -34.44 -0.26 -13.86 16 15 H 0.06 1.49 5.68 -52.48 -0.30 1.19 16 16 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 17 N -0.89 -26.53 13.29 55.43 0.74 -25.79 16 18 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 C -0.15 -1.00 5.15 -90.62 -0.47 -1.46 16 23 C -0.18 -1.10 10.18 -26.70 -0.27 -1.37 16 24 C -0.18 -1.26 9.67 -26.70 -0.26 -1.52 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.37 7.18 -51.93 -0.37 0.00 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.74 7.12 -51.93 -0.37 0.37 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.39 3.30 7.67 -40.82 -0.31 2.99 16 31 H 0.39 4.88 6.18 -40.82 -0.25 4.63 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 35 H 0.07 1.26 6.62 -51.93 -0.34 0.91 16 36 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.07 1.26 6.61 -51.93 -0.34 0.92 16 39 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 40 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 43 H 0.11 0.70 8.11 -51.93 -0.42 0.27 16 44 H 0.09 0.55 8.05 -51.93 -0.42 0.13 16 45 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.10 0.73 7.58 -51.93 -0.39 0.34 16 LS Contribution 369.56 15.07 5.57 5.57 Total: -1.00 -31.63 369.56 -9.37 -41.00 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -8.43 Total: 3.35 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: -1.64 Total: -8.22 kcal Atomic # 7 Polarization: -46.00 SS G_CDS: 0.07 Total: -45.93 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: 0.09 Total: -11.98 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.63 -9.37 -41.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588300837.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.275 kcal (2) G-P(sol) polarization free energy of solvation -31.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds