Wall clock time and date at job start Tue Mar 31 2020 05:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.46791 * 2 1 4 4 C 1.52995 * 109.47341 * 120.00263 * 2 1 3 5 5 N 1.46504 * 109.47207 * 295.00042 * 4 2 1 6 6 C 1.34771 * 120.00255 * 180.02562 * 5 4 2 7 7 O 1.21584 * 120.00254 * 359.97438 * 6 5 4 8 8 N 1.34774 * 119.99870 * 180.02562 * 6 5 4 9 9 C 1.46505 * 119.99710 * 179.97438 * 8 6 5 10 10 C 1.53005 * 109.47026 * 180.02562 * 9 8 6 11 11 C 1.53008 * 109.46811 * 299.99907 * 10 9 8 12 12 C 1.52996 * 109.46986 * 59.99816 * 10 9 8 13 13 C 1.52999 * 109.47195 * 180.02562 * 10 9 8 14 14 C 1.50697 * 109.47273 * 179.97438 * 13 10 9 15 15 H 1.08001 * 119.99811 * 0.02562 * 14 13 10 16 16 C 1.37874 * 120.00230 * 179.97438 * 14 13 10 17 17 N 1.31517 * 120.00265 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 120.00051 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.47115 * 89.99467 * 18 16 14 20 20 H 1.48499 * 109.47243 * 209.99825 * 18 16 14 21 21 H 1.48506 * 109.47007 * 330.00219 * 18 16 14 22 22 C 1.52996 * 109.47138 * 240.00475 * 2 1 3 23 23 C 1.53000 * 117.49997 * 179.97438 * 22 2 1 24 24 C 1.53002 * 60.02940 * 252.49592 * 23 22 2 25 25 H 1.09001 * 109.47494 * 59.99823 * 1 2 3 26 26 H 1.09004 * 109.47002 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47356 * 299.99703 * 1 2 3 28 28 H 1.09003 * 109.47238 * 54.99814 * 4 2 1 29 29 H 1.08998 * 109.47246 * 175.00238 * 4 2 1 30 30 H 0.97007 * 119.99525 * 0.02562 * 5 4 2 31 31 H 0.96994 * 120.00600 * 359.97438 * 8 6 5 32 32 H 1.08996 * 109.47291 * 300.00035 * 9 8 6 33 33 H 1.09001 * 109.47339 * 60.00110 * 9 8 6 34 34 H 1.09002 * 109.46749 * 60.00429 * 11 10 9 35 35 H 1.09007 * 109.46637 * 179.97438 * 11 10 9 36 36 H 1.08995 * 109.47163 * 300.00166 * 11 10 9 37 37 H 1.09004 * 109.46986 * 60.00553 * 12 10 9 38 38 H 1.09007 * 109.47169 * 179.97438 * 12 10 9 39 39 H 1.08996 * 109.47591 * 299.99959 * 12 10 9 40 40 H 1.08996 * 109.47143 * 300.00047 * 13 10 9 41 41 H 1.09004 * 109.46857 * 60.00189 * 13 10 9 42 42 H 0.97000 * 120.00070 * 180.02562 * 17 16 14 43 43 H 1.09008 * 115.56055 * 325.68508 * 22 2 1 44 44 H 1.09002 * 117.49833 * 359.97438 * 23 22 2 45 45 H 1.09002 * 117.49953 * 144.99738 * 23 22 2 46 46 H 1.09000 * 117.49996 * 107.50493 * 24 23 22 47 47 H 1.08999 * 117.49664 * 252.51862 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 1.6524 0.0353 2.4424 6 6 1.9965 -0.4132 3.6658 7 8 2.6281 -1.4458 3.7795 8 7 1.6395 0.2826 4.7635 9 6 2.0130 -0.2052 6.0935 10 6 1.4889 0.7618 7.1571 11 6 2.0989 2.1469 6.9320 12 6 -0.0350 0.8532 7.0568 13 6 1.8795 0.2528 8.5461 14 6 1.3639 1.2056 9.5936 15 1 0.8124 2.0859 9.2983 16 6 1.5953 0.9529 10.9291 17 7 1.1449 1.7841 11.8434 18 14 2.5486 -0.5701 11.4400 19 1 3.9970 -0.2488 11.5053 20 1 2.0812 -1.0220 12.7751 21 1 2.3257 -1.6504 10.4457 22 6 2.0399 -0.7211 -1.2493 23 6 3.5550 -0.8274 -1.4346 24 6 2.7419 0.1229 -2.3160 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.6054 -1.7198 1.2951 29 1 3.1263 -0.7994 1.2055 30 1 1.1482 0.8590 2.3518 31 1 1.1353 1.1063 4.6730 32 1 1.5781 -1.1917 6.2541 33 1 3.0987 -0.2707 6.1649 34 1 1.8209 2.5098 5.9424 35 1 1.7251 2.8359 7.6895 36 1 3.1845 2.0818 7.0034 37 1 -0.4695 -0.1335 7.2172 38 1 -0.4085 1.5418 7.8148 39 1 -0.3129 1.2161 6.0673 40 1 1.4454 -0.7340 8.7067 41 1 2.9653 0.1881 8.6172 42 1 1.3081 1.6065 12.7829 43 1 1.4309 -1.5583 -1.5906 44 1 4.1883 -0.3832 -0.6668 45 1 3.9430 -1.7349 -1.8974 46 1 2.8404 1.1920 -2.1278 47 1 2.5947 -0.1595 -3.3584 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588300838.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:07 Heat of formation + Delta-G solvation = -34.390859 kcal Electronic energy + Delta-G solvation = -22353.422546 eV Core-core repulsion = 19150.097131 eV Total energy + Delta-G solvation = -3203.325415 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.01501 -38.58665 -37.27373 -35.04086 -33.59058 -32.26031 -31.67171 -27.87501 -27.03799 -26.53710 -25.63760 -23.35340 -22.68314 -22.19676 -20.74170 -20.23028 -18.71823 -17.62213 -16.85489 -16.21253 -16.01561 -15.48282 -15.00594 -14.58053 -14.34511 -14.20939 -13.74215 -13.69025 -13.39041 -13.03324 -12.87896 -12.68957 -12.33069 -12.24760 -11.95432 -11.76967 -11.62717 -11.26646 -11.20553 -11.09077 -10.99457 -10.59910 -10.56899 -10.45786 -10.32757 -10.07377 -9.94746 -9.73004 -9.49117 -9.16857 -8.97636 -8.57638 -8.51987 -6.02995 -4.00117 2.82253 3.33136 3.39724 3.41036 3.42659 3.45695 4.19026 4.40495 4.46483 4.47220 4.54921 4.71580 4.86254 4.96782 5.18084 5.29761 5.29899 5.39837 5.44999 5.47635 5.54988 5.57555 5.66092 5.66772 5.72393 5.77508 5.84668 6.01534 6.14606 6.15068 6.20787 6.35725 6.47446 6.53851 6.61557 6.76435 6.92670 7.03301 7.04700 7.08570 7.22834 7.39205 7.79729 8.17131 8.54107 8.77724 9.01037 9.59859 11.09704 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.038968 B = 0.002744 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.374863 B =10200.065726 C =10504.845542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.073 4.073 3 H 0.076 0.924 4 C 0.146 3.854 5 N -0.751 5.751 6 C 0.700 3.300 7 O -0.596 6.596 8 N -0.737 5.737 9 C 0.145 3.855 10 C -0.063 4.063 11 C -0.128 4.128 12 C -0.128 4.128 13 C -0.002 4.002 14 C -0.510 4.510 15 H 0.078 0.922 16 C 0.066 3.934 17 N -0.904 5.904 18 Si 0.875 3.125 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.265 1.265 22 C -0.146 4.146 23 C -0.180 4.180 24 C -0.178 4.178 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.393 0.607 31 H 0.394 0.606 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.030 0.970 35 H 0.072 0.928 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.072 0.928 39 H 0.030 0.970 40 H 0.018 0.982 41 H 0.014 0.986 42 H 0.262 0.738 43 H 0.107 0.893 44 H 0.096 0.904 45 H 0.095 0.905 46 H 0.094 0.906 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.372 -1.476 -26.468 26.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.092 4.092 3 H 0.095 0.905 4 C 0.022 3.978 5 N -0.408 5.408 6 C 0.399 3.601 7 O -0.474 6.474 8 N -0.393 5.393 9 C 0.021 3.979 10 C -0.063 4.063 11 C -0.185 4.185 12 C -0.185 4.185 13 C -0.040 4.040 14 C -0.548 4.548 15 H 0.096 0.904 16 C -0.135 4.135 17 N -0.544 5.544 18 Si 0.702 3.298 19 H -0.204 1.204 20 H -0.215 1.215 21 H -0.189 1.189 22 C -0.165 4.165 23 C -0.217 4.217 24 C -0.215 4.215 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.227 0.773 31 H 0.229 0.771 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.049 0.951 35 H 0.090 0.910 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.090 0.910 39 H 0.049 0.951 40 H 0.037 0.963 41 H 0.032 0.968 42 H 0.072 0.928 43 H 0.125 0.875 44 H 0.115 0.885 45 H 0.113 0.887 46 H 0.112 0.888 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.216 -2.428 -26.144 26.258 hybrid contribution 0.073 -0.023 0.335 0.343 sum 0.289 -2.451 -25.810 25.927 Atomic orbital electron populations 1.21821 0.94189 1.02402 1.01843 1.20953 0.96444 0.99250 0.92510 0.90521 1.21165 0.99911 0.94912 0.81847 1.45134 1.61995 1.28853 1.04827 1.16002 0.80057 0.83575 0.80434 1.90910 1.45594 1.24997 1.85905 1.45321 1.60466 1.27927 1.05557 1.21485 0.99650 0.97621 0.79128 1.20694 0.95554 0.94557 0.95502 1.21769 1.00253 0.96948 0.99534 1.21761 0.95031 1.02014 0.99677 1.19595 0.96277 0.97021 0.91139 1.21078 1.35209 1.08868 0.89617 0.90413 1.25002 0.95474 0.96251 0.96772 1.69904 1.46685 1.36941 1.00832 0.86856 0.80532 0.84420 0.77952 1.20383 1.21534 1.18941 1.22248 0.95188 1.02014 0.97044 1.22987 0.93764 1.01820 1.03111 1.23023 1.04645 0.97617 0.96232 0.92320 0.92270 0.92386 0.91683 0.91668 0.77326 0.77087 0.92080 0.92090 0.95091 0.90951 0.93422 0.93417 0.90952 0.95071 0.96325 0.96775 0.92820 0.87507 0.88524 0.88694 0.88791 0.88862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.05 37.16 0.34 -0.58 16 2 C -0.07 -0.50 2.58 -90.63 -0.23 -0.74 16 3 H 0.08 0.51 7.90 -51.93 -0.41 0.10 16 4 C 0.15 1.44 4.98 -4.04 -0.02 1.42 16 5 N -0.75 -8.09 5.29 -65.23 -0.34 -8.44 16 6 C 0.70 10.61 8.57 -86.93 -0.74 9.87 16 7 O -0.60 -11.65 16.34 5.29 0.09 -11.57 16 8 N -0.74 -10.54 4.96 -65.22 -0.32 -10.86 16 9 C 0.14 2.49 4.56 -4.04 -0.02 2.47 16 10 C -0.06 -1.15 0.54 -154.50 -0.08 -1.23 16 11 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 12 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 13 C 0.00 -0.06 3.11 -27.88 -0.09 -0.14 16 14 C -0.51 -13.66 8.20 -34.44 -0.28 -13.95 16 15 H 0.08 2.20 5.92 -52.49 -0.31 1.89 16 16 C 0.07 1.87 5.47 -17.82 -0.10 1.77 16 17 N -0.90 -27.29 13.96 55.43 0.77 -26.52 16 18 Si 0.87 21.63 27.47 -169.99 -4.67 16.96 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 21 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 22 C -0.15 -0.96 5.15 -90.59 -0.47 -1.43 16 23 C -0.18 -1.22 9.67 -26.73 -0.26 -1.47 16 24 C -0.18 -1.06 10.18 -26.69 -0.27 -1.34 16 25 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.36 7.18 -51.93 -0.37 -0.01 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 0.72 7.13 -51.93 -0.37 0.35 16 30 H 0.39 3.16 7.67 -40.82 -0.31 2.84 16 31 H 0.39 4.69 6.18 -40.82 -0.25 4.44 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.03 0.43 6.86 -51.93 -0.36 0.08 16 35 H 0.07 1.41 6.62 -51.92 -0.34 1.06 16 36 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.07 1.40 6.62 -51.92 -0.34 1.06 16 39 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 40 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 41 H 0.01 0.33 7.57 -51.93 -0.39 -0.07 16 42 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 43 H 0.11 0.67 8.11 -51.92 -0.42 0.25 16 44 H 0.10 0.70 7.59 -51.93 -0.39 0.31 16 45 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.09 0.54 8.05 -51.93 -0.42 0.12 16 47 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 365.97 15.07 5.52 5.52 Total: -1.00 -31.91 365.97 -8.99 -40.90 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -8.40 Total: 3.17 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: -1.63 Total: -9.17 kcal Atomic # 7 Polarization: -45.92 SS G_CDS: 0.10 Total: -45.82 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.09 Total: -11.57 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.91 -8.99 -40.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588300838.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.509 kcal (2) G-P(sol) polarization free energy of solvation -31.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds