Wall clock time and date at job start Tue Mar 31 2020 05:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 N 1.46504 * 109.47051 * 185.00029 * 4 2 1 6 6 C 1.34774 * 119.99669 * 179.97438 * 5 4 2 7 7 O 1.21276 * 120.00291 * 359.97438 * 6 5 4 8 8 C 1.50703 * 119.99766 * 179.97438 * 6 5 4 9 9 C 1.52996 * 109.47152 * 180.02562 * 8 6 5 10 10 C 1.53004 * 109.47396 * 180.02562 * 9 8 6 11 11 C 1.52996 * 109.47396 * 179.97438 * 10 9 8 12 12 C 1.50695 * 109.47265 * 179.97438 * 11 10 9 13 13 H 1.08004 * 119.99781 * 0.02562 * 12 11 10 14 14 C 1.37873 * 120.00082 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00297 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 119.99928 * 180.02562 * 14 12 11 17 17 H 1.48491 * 109.47214 * 90.00215 * 16 14 12 18 18 H 1.48500 * 109.47081 * 210.00247 * 16 14 12 19 19 H 1.48499 * 109.47222 * 330.00044 * 16 14 12 20 20 N 1.46894 * 109.47515 * 120.00133 * 2 1 3 21 21 C 1.46902 * 110.99790 * 58.95192 * 20 2 1 22 22 C 1.46896 * 111.00342 * 295.00322 * 20 2 1 23 23 C 1.53000 * 117.49859 * 248.74698 * 22 20 2 24 24 C 1.52995 * 117.50308 * 180.08693 * 22 20 2 25 25 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 28 28 H 1.08996 * 109.46945 * 304.99450 * 4 2 1 29 29 H 1.09000 * 109.47314 * 64.99572 * 4 2 1 30 30 H 0.96996 * 119.99902 * 359.97438 * 5 4 2 31 31 H 1.08997 * 109.47281 * 299.99965 * 8 6 5 32 32 H 1.09000 * 109.47293 * 59.99738 * 8 6 5 33 33 H 1.09006 * 109.46758 * 299.99480 * 9 8 6 34 34 H 1.09000 * 109.47315 * 59.99654 * 9 8 6 35 35 H 1.09009 * 109.46236 * 299.99784 * 10 9 8 36 36 H 1.08993 * 109.47096 * 59.99434 * 10 9 8 37 37 H 1.08997 * 109.46920 * 299.99768 * 11 10 9 38 38 H 1.09000 * 109.47315 * 59.99333 * 11 10 9 39 39 H 0.96992 * 120.00088 * 179.97438 * 15 14 12 40 40 H 1.09003 * 109.46808 * 60.00632 * 21 20 2 41 41 H 1.09004 * 109.47176 * 180.02562 * 21 20 2 42 42 H 1.08994 * 109.47263 * 300.00333 * 21 20 2 43 43 H 1.09006 * 115.54904 * 34.41078 * 22 20 2 44 44 H 1.08993 * 117.49859 * 359.97438 * 23 22 20 45 45 H 1.09001 * 117.49622 * 145.01664 * 23 22 20 46 46 H 1.09009 * 117.49591 * 214.98164 * 24 22 20 47 47 H 1.08995 * 117.49844 * 359.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 7 3.5001 -0.8263 -1.1907 6 6 4.1730 -1.4290 -2.1908 7 8 3.5698 -1.8847 -3.1392 8 6 5.6749 -1.5367 -2.1308 9 6 6.1849 -2.2579 -3.3800 10 6 7.7098 -2.3678 -3.3188 11 6 8.2197 -3.0896 -4.5677 12 6 9.7216 -3.1972 -4.5076 13 1 10.2587 -2.7918 -3.6629 14 6 10.4100 -3.8143 -5.5305 15 7 9.7559 -4.3085 -6.5589 16 14 12.2717 -3.9483 -5.4557 17 1 12.6500 -5.2115 -4.7728 18 1 12.8239 -3.9463 -6.8342 19 1 12.8212 -2.7937 -4.7007 20 7 2.0197 -0.6925 1.1993 21 6 1.5283 -2.0761 1.2458 22 6 1.6488 0.0390 2.4180 23 6 2.7745 0.7024 3.2140 24 6 2.0883 -0.5528 3.7587 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.6055 -1.7197 -1.2953 29 1 1.7516 -0.1582 -2.1371 30 1 3.9824 -0.4621 -0.4320 31 1 6.1093 -0.5380 -2.0856 32 1 5.9637 -2.0990 -1.2428 33 1 5.7506 -3.2567 -3.4256 34 1 5.8962 -1.6952 -4.2678 35 1 8.1444 -1.3691 -3.2729 36 1 7.9981 -2.9306 -2.4311 37 1 7.7851 -4.0881 -4.6131 38 1 7.9313 -2.5271 -5.4557 39 1 10.2403 -4.7422 -7.2787 40 1 1.8763 -2.6150 0.3646 41 1 1.9054 -2.5656 2.1438 42 1 0.4386 -2.0742 1.2638 43 1 0.6868 0.5505 2.3848 44 1 3.7903 0.5957 2.8336 45 1 2.5529 1.6501 3.7048 46 1 1.4156 -0.4304 4.6076 47 1 2.6524 -1.4852 3.7364 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588343392.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:08 Heat of formation + Delta-G solvation = -52.751519 kcal Electronic energy + Delta-G solvation = -21873.311948 eV Core-core repulsion = 18669.190355 eV Total energy + Delta-G solvation = -3204.121593 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.91395 -39.80416 -36.96283 -36.50617 -34.66529 -34.55371 -31.74218 -31.10380 -28.20901 -27.08201 -26.65550 -24.01839 -23.10008 -22.48722 -21.75494 -21.14116 -20.34994 -18.41300 -17.97922 -17.76544 -17.08569 -16.85509 -16.48855 -15.94726 -15.84871 -15.36047 -15.11408 -14.59230 -14.52218 -14.24721 -13.85489 -13.64767 -13.57327 -13.46920 -13.22346 -13.06125 -12.83641 -12.73902 -12.42353 -12.32717 -12.15314 -12.13521 -12.10506 -11.73911 -11.36267 -11.34133 -11.29948 -11.14615 -11.03372 -10.72484 -10.54155 -10.00258 -9.25693 -8.17754 -6.30000 1.40859 1.43406 1.54496 1.72165 2.27482 2.43038 2.79384 2.93677 3.14763 3.72558 3.90745 4.01891 4.06967 4.11936 4.14054 4.17519 4.26532 4.31827 4.34680 4.57003 4.61545 4.65810 4.71437 4.74329 4.78524 4.81782 4.86595 4.87374 4.91392 5.05352 5.07236 5.17447 5.21569 5.26461 5.34924 5.37407 5.38452 5.53031 5.59432 5.79453 5.89144 6.02638 6.16751 6.26474 6.67284 6.88440 7.36279 7.39535 8.94586 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028887 B = 0.002376 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.072751 B =11779.286324 C =12418.174814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.080 3.920 3 H 0.099 0.901 4 C 0.127 3.873 5 N -0.706 5.706 6 C 0.509 3.491 7 O -0.594 6.594 8 C -0.127 4.127 9 C -0.095 4.095 10 C -0.095 4.095 11 C 0.018 3.982 12 C -0.541 4.541 13 H 0.066 0.934 14 C -0.008 4.008 15 N -0.938 5.938 16 Si 0.970 3.030 17 H -0.271 1.271 18 H -0.284 1.284 19 H -0.259 1.259 20 N -0.511 5.511 21 C 0.021 3.979 22 C -0.005 4.005 23 C -0.162 4.162 24 C -0.174 4.174 25 H 0.072 0.928 26 H 0.058 0.942 27 H 0.070 0.930 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.418 0.582 31 H 0.116 0.884 32 H 0.115 0.885 33 H 0.041 0.959 34 H 0.042 0.958 35 H 0.060 0.940 36 H 0.060 0.940 37 H -0.016 1.016 38 H -0.016 1.016 39 H 0.263 0.737 40 H 0.057 0.943 41 H 0.072 0.928 42 H 0.037 0.963 43 H 0.100 0.900 44 H 0.095 0.905 45 H 0.104 0.896 46 H 0.104 0.896 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.739 12.451 23.626 33.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.028 4.028 3 H 0.117 0.883 4 C 0.002 3.998 5 N -0.358 5.358 6 C 0.297 3.703 7 O -0.475 6.475 8 C -0.167 4.167 9 C -0.133 4.133 10 C -0.133 4.133 11 C -0.019 4.019 12 C -0.579 4.579 13 H 0.084 0.916 14 C -0.205 4.205 15 N -0.579 5.579 16 Si 0.794 3.206 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.183 1.183 20 N -0.235 5.235 21 C -0.127 4.127 22 C -0.113 4.113 23 C -0.200 4.200 24 C -0.211 4.211 25 H 0.091 0.909 26 H 0.077 0.923 27 H 0.089 0.911 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.256 0.744 31 H 0.134 0.866 32 H 0.133 0.867 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.002 0.998 38 H 0.003 0.997 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.090 0.910 42 H 0.055 0.945 43 H 0.117 0.883 44 H 0.113 0.887 45 H 0.122 0.878 46 H 0.122 0.878 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -19.646 12.035 22.793 32.409 hybrid contribution 0.016 -0.385 -0.363 0.530 sum -19.630 11.650 22.429 32.002 Atomic orbital electron populations 1.22346 0.95421 1.02753 1.03474 1.21860 0.94186 0.98509 0.88266 0.88272 1.21410 0.80474 1.00265 0.97618 1.45757 1.07531 1.59128 1.23389 1.21150 0.91044 0.76530 0.81598 1.90684 1.71489 1.49797 1.35522 1.21640 0.90148 1.04421 1.00478 1.21236 0.95415 0.99577 0.97088 1.21447 0.93548 1.00166 0.98126 1.19058 0.95070 0.94026 0.93709 1.21754 0.93485 1.36895 1.05770 0.91581 1.26108 1.04313 0.95079 0.94984 1.70134 1.37870 1.39669 1.10212 0.85369 0.78683 0.79067 0.77445 1.19690 1.20917 1.18299 1.61948 1.58695 1.02042 1.00774 1.22408 0.98537 0.89318 1.02431 1.22536 0.98048 1.02806 0.87939 1.23120 0.97764 0.96791 1.02280 1.23097 1.03982 0.98280 0.95765 0.90920 0.92292 0.91076 0.92854 0.91861 0.74401 0.86555 0.86735 0.94013 0.93893 0.92079 0.92147 0.99760 0.99713 0.92854 0.92464 0.90967 0.94463 0.88271 0.88694 0.87778 0.87753 0.88946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.81 8.58 71.98 0.62 -1.19 16 2 C 0.08 0.97 2.51 44.92 0.11 1.09 16 3 H 0.10 1.09 8.13 -2.39 -0.02 1.08 16 4 C 0.13 2.31 4.69 86.38 0.40 2.71 16 5 N -0.71 -14.07 5.39 -463.05 -2.50 -16.57 16 6 C 0.51 14.47 7.83 87.66 0.69 15.15 16 7 O -0.59 -22.96 15.98 -3.02 -0.05 -23.00 16 8 C -0.13 -3.34 5.70 29.85 0.17 -3.17 16 9 C -0.09 -3.57 4.50 30.59 0.14 -3.43 16 10 C -0.10 -4.01 5.15 30.59 0.16 -3.85 16 11 C 0.02 1.04 4.97 29.85 0.15 1.19 16 12 C -0.54 -31.88 9.11 25.60 0.23 -31.65 16 13 H 0.07 3.65 7.74 -2.91 -0.02 3.63 16 14 C -0.01 -0.47 5.46 84.65 0.46 0.00 16 15 N -0.94 -59.80 13.29 21.45 0.28 -59.52 16 16 Si 0.97 45.32 29.54 68.60 2.03 47.35 16 17 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 18 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 19 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 20 N -0.51 -6.23 4.34 -871.81 -3.78 -10.02 16 21 C 0.02 0.28 8.67 127.69 1.11 1.38 16 22 C 0.00 -0.05 5.03 44.91 0.23 0.18 16 23 C -0.16 -1.52 10.46 30.62 0.32 -1.20 16 24 C -0.17 -1.63 9.73 30.62 0.30 -1.33 16 25 H 0.07 0.59 6.34 -2.39 -0.02 0.58 16 26 H 0.06 0.66 6.39 -2.39 -0.02 0.65 16 27 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 28 H 0.05 1.13 6.70 -2.39 -0.02 1.12 16 29 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.42 6.37 8.14 -92.71 -0.75 5.62 16 31 H 0.12 2.47 8.14 -2.39 -0.02 2.45 16 32 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 33 H 0.04 1.72 8.10 -2.38 -0.02 1.70 16 34 H 0.04 1.76 8.10 -2.39 -0.02 1.74 16 35 H 0.06 2.39 8.14 -2.38 -0.02 2.37 16 36 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 37 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 38 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 39 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 40 H 0.06 0.96 6.44 -2.39 -0.02 0.95 16 41 H 0.07 0.91 6.76 -2.38 -0.02 0.90 16 42 H 0.04 0.45 6.28 -2.39 -0.02 0.44 16 43 H 0.10 0.88 6.27 -2.38 -0.01 0.86 16 44 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.10 0.75 8.14 -2.38 -0.02 0.73 16 47 H 0.09 1.01 7.26 -2.39 -0.02 0.99 16 Total: -1.00 -74.41 372.77 1.24 -73.17 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: 0.18 Total: 12.71 kcal Atomic # 6 Polarization: -29.21 SS G_CDS: 5.08 Total: -24.13 kcal Atomic # 7 Polarization: -80.10 SS G_CDS: -5.99 Total: -86.10 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: -0.05 Total: -23.00 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -74.41 1.24 -73.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588343392.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.421 kcal (2) G-P(sol) polarization free energy of solvation -74.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds