Wall clock time and date at job start Tue Mar 31 2020 05:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08997 * 109.46604 * 2 1 4 4 C 1.52999 * 109.46984 * 120.00375 * 2 1 3 5 5 N 1.46506 * 109.46684 * 175.00142 * 4 2 1 6 6 C 1.34777 * 119.99873 * 180.02562 * 5 4 2 7 7 O 1.21284 * 119.99754 * 359.97438 * 6 5 4 8 8 C 1.50696 * 120.00137 * 179.97438 * 6 5 4 9 9 C 1.53002 * 109.47300 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.46965 * 180.02562 * 9 8 6 11 11 C 1.53002 * 109.46965 * 179.97438 * 10 9 8 12 12 C 1.50696 * 109.47300 * 179.97438 * 11 10 9 13 13 H 1.08004 * 120.00285 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00339 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99769 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00303 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46819 * 60.00191 * 16 14 12 18 18 H 1.48494 * 109.47291 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47196 * 300.00696 * 16 14 12 20 20 N 1.46899 * 109.46643 * 240.00054 * 2 1 3 21 21 C 1.46893 * 111.00209 * 306.04520 * 20 2 1 22 22 C 1.46903 * 110.99852 * 70.00525 * 20 2 1 23 23 C 1.53000 * 117.49431 * 243.74203 * 22 20 2 24 24 C 1.53002 * 117.49898 * 175.08474 * 22 20 2 25 25 H 1.09001 * 109.46642 * 299.99764 * 1 2 3 26 26 H 1.08998 * 109.46901 * 59.99999 * 1 2 3 27 27 H 1.08999 * 109.47112 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47486 * 55.00077 * 4 2 1 29 29 H 1.09001 * 109.47362 * 294.99354 * 4 2 1 30 30 H 0.96995 * 120.00050 * 359.72237 * 5 4 2 31 31 H 1.09004 * 109.47043 * 299.99732 * 8 6 5 32 32 H 1.09000 * 109.46978 * 59.99653 * 8 6 5 33 33 H 1.09000 * 109.46497 * 299.99731 * 9 8 6 34 34 H 1.08987 * 109.47025 * 59.99846 * 9 8 6 35 35 H 1.09004 * 109.46976 * 299.99579 * 10 9 8 36 36 H 1.09004 * 109.47878 * 59.99710 * 10 9 8 37 37 H 1.09004 * 109.46930 * 299.99607 * 11 10 9 38 38 H 1.09000 * 109.47312 * 59.99663 * 11 10 9 39 39 H 0.97005 * 120.00032 * 179.97438 * 15 14 12 40 40 H 1.08998 * 109.47244 * 60.00590 * 21 20 2 41 41 H 1.09009 * 109.46724 * 180.02562 * 21 20 2 42 42 H 1.08996 * 109.47082 * 299.99552 * 21 20 2 43 43 H 1.08995 * 115.55303 * 29.40408 * 22 20 2 44 44 H 1.09000 * 117.50339 * 359.97438 * 23 22 20 45 45 H 1.09001 * 117.50103 * 145.02093 * 23 22 20 46 46 H 1.08996 * 117.49654 * 214.97290 * 24 22 20 47 47 H 1.09002 * 117.49765 * 359.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5002 -0.8264 1.1905 6 6 4.1731 -1.4293 2.1905 7 8 3.5700 -1.8843 3.1393 8 6 5.6750 -1.5379 2.1299 9 6 6.1850 -2.2591 3.3791 10 6 7.7098 -2.3688 3.3178 11 6 8.2200 -3.0894 4.5674 12 6 9.7218 -3.1980 4.5067 13 1 10.2588 -2.7939 3.6613 14 6 10.4104 -3.8133 5.5305 15 7 9.7565 -4.3059 6.5598 16 14 12.2720 -3.9486 5.4550 17 1 12.8648 -2.5886 5.3905 18 1 12.7672 -4.6468 6.6684 19 1 12.6638 -4.7171 4.2463 20 7 2.0196 -0.6925 -1.1995 21 6 1.4343 -2.0354 -1.3078 22 6 1.7529 0.0973 -2.4090 23 6 0.8025 -0.5010 -3.4480 24 6 2.3046 -0.4320 -3.7343 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.6055 -1.7199 1.2951 29 1 1.7518 -0.1584 2.1370 30 1 3.9821 -0.4660 0.4298 31 1 5.9630 -2.1007 1.2419 32 1 6.1099 -0.5394 2.0841 33 1 5.8970 -1.6958 4.2668 34 1 5.7502 -3.2574 3.4253 35 1 7.9982 -2.9318 2.4301 36 1 8.1445 -1.3702 3.2718 37 1 7.9316 -2.5260 5.4549 38 1 7.7854 -4.0880 4.6138 39 1 10.2410 -4.7392 7.2799 40 1 0.3490 -1.9548 -1.3694 41 1 1.8140 -2.5260 -2.2042 42 1 1.7060 -2.6220 -0.4303 43 1 1.7298 1.1780 -2.2692 44 1 0.3754 -1.4808 -3.2343 45 1 0.1544 0.1861 -3.9921 46 1 2.6441 0.3005 -4.4666 47 1 2.8658 -1.3661 -3.7087 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588343393.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:11 Heat of formation + Delta-G solvation = -28.420802 kcal Electronic energy + Delta-G solvation = -21861.594178 eV Core-core repulsion = 18658.527645 eV Total energy + Delta-G solvation = -3203.066534 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.13904 -39.17617 -36.20124 -34.79599 -33.62648 -32.54348 -30.64873 -29.66023 -27.03857 -26.89811 -25.07664 -22.75736 -22.29977 -21.68132 -20.13451 -19.92955 -19.72565 -17.46381 -16.74768 -16.31825 -16.01960 -15.67273 -15.34162 -15.24058 -14.41457 -14.39764 -13.88047 -13.76858 -13.29258 -13.04470 -12.76349 -12.55351 -12.45968 -12.35607 -12.06345 -11.87030 -11.72513 -11.59865 -11.52171 -11.25759 -11.13216 -10.91793 -10.70792 -10.49452 -10.44647 -10.33444 -9.69682 -9.54173 -9.15502 -8.99904 -8.93303 -8.58402 -8.25811 -5.90759 -3.93109 2.87194 3.10178 3.32446 3.38469 3.42562 3.45064 3.60602 4.29515 4.44584 4.47468 4.52762 4.56087 4.69458 4.81537 4.83838 5.04546 5.10310 5.19702 5.21773 5.26822 5.38272 5.40870 5.44082 5.46474 5.49305 5.56965 5.59044 5.65919 5.70776 5.75806 5.98788 6.23034 6.39836 6.43705 6.57661 6.61987 6.65866 6.92334 7.10424 7.27029 7.65099 7.79065 7.96118 8.11201 8.42940 8.53059 9.14498 9.70136 11.20544 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.032016 B = 0.002311 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.346698 B =12114.090431 C =12693.360427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.069 3.931 3 H 0.091 0.909 4 C 0.129 3.871 5 N -0.726 5.726 6 C 0.510 3.490 7 O -0.543 6.543 8 C -0.138 4.138 9 C -0.103 4.103 10 C -0.110 4.110 11 C 0.020 3.980 12 C -0.520 4.520 13 H 0.054 0.946 14 C 0.055 3.945 15 N -0.896 5.896 16 Si 0.892 3.108 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.277 1.277 20 N -0.501 5.501 21 C 0.012 3.988 22 C 0.022 3.978 23 C -0.220 4.220 24 C -0.170 4.170 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.406 0.594 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.046 0.954 36 H 0.046 0.954 37 H 0.016 0.984 38 H 0.015 0.985 39 H 0.260 0.740 40 H 0.038 0.962 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.117 0.883 44 H 0.099 0.901 45 H 0.092 0.908 46 H 0.097 0.903 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.942 10.869 -20.952 31.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.040 4.040 3 H 0.109 0.891 4 C 0.004 3.996 5 N -0.380 5.380 6 C 0.297 3.703 7 O -0.419 6.419 8 C -0.178 4.178 9 C -0.141 4.141 10 C -0.148 4.148 11 C -0.017 4.017 12 C -0.558 4.558 13 H 0.072 0.928 14 C -0.146 4.146 15 N -0.535 5.535 16 Si 0.720 3.280 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.203 1.203 20 N -0.223 5.223 21 C -0.135 4.135 22 C -0.087 4.087 23 C -0.259 4.259 24 C -0.208 4.208 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.241 0.759 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.034 0.966 38 H 0.034 0.966 39 H 0.070 0.930 40 H 0.057 0.943 41 H 0.088 0.912 42 H 0.092 0.908 43 H 0.135 0.865 44 H 0.117 0.883 45 H 0.110 0.890 46 H 0.115 0.885 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -20.833 10.385 -20.011 30.697 hybrid contribution 0.320 0.134 -0.539 0.641 sum -20.513 10.519 -20.550 30.883 Atomic orbital electron populations 1.22392 0.96089 1.02872 1.02796 1.22034 0.93758 0.98556 0.89638 0.89125 1.21316 0.81477 1.00585 0.96240 1.45927 1.06913 1.61025 1.24126 1.21082 0.90785 0.76740 0.81658 1.90696 1.70596 1.47283 1.33366 1.21765 0.90453 1.03236 1.02304 1.21435 0.97179 1.00258 0.95186 1.21648 0.92032 1.00221 1.00882 1.19095 0.95332 0.95429 0.91880 1.21257 0.92439 1.36938 1.05169 0.92816 1.25046 0.98302 0.95707 0.95568 1.69969 1.35488 1.38845 1.09215 0.86669 0.85930 0.78161 0.77275 1.20304 1.21356 1.20298 1.62022 1.56964 1.02495 1.00784 1.22588 0.97701 0.90146 1.03102 1.22624 1.02866 0.97033 0.86172 1.23565 0.93613 1.03565 1.05126 1.23078 0.95748 1.03622 0.98321 0.91550 0.91914 0.91793 0.91739 0.91178 0.75862 0.89228 0.89296 0.91906 0.91911 0.93511 0.93515 0.96609 0.96618 0.93028 0.94341 0.91237 0.90763 0.86523 0.88259 0.88991 0.88493 0.88439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.03 8.48 37.16 0.32 -0.72 16 2 C 0.07 0.45 2.44 -67.71 -0.17 0.29 16 3 H 0.09 0.56 7.96 -51.93 -0.41 0.14 16 4 C 0.13 1.20 4.84 -4.04 -0.02 1.18 16 5 N -0.73 -7.71 5.39 -60.29 -0.32 -8.03 16 6 C 0.51 7.42 7.83 -10.99 -0.09 7.33 16 7 O -0.54 -10.24 15.98 5.55 0.09 -10.15 16 8 C -0.14 -1.93 5.70 -27.88 -0.16 -2.09 16 9 C -0.10 -1.91 4.50 -26.73 -0.12 -2.03 16 10 C -0.11 -2.34 5.15 -26.73 -0.14 -2.48 16 11 C 0.02 0.53 4.97 -27.88 -0.14 0.40 16 12 C -0.52 -15.24 9.11 -34.44 -0.31 -15.55 16 13 H 0.05 1.51 7.74 -52.48 -0.41 1.11 16 14 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 15 N -0.90 -27.91 13.29 55.43 0.74 -27.17 16 16 Si 0.89 22.19 29.54 -169.99 -5.02 17.17 16 17 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 N -0.50 -3.40 4.36 -226.91 -0.99 -4.39 16 21 C 0.01 0.08 7.41 60.06 0.45 0.53 16 22 C 0.02 0.13 5.20 -67.71 -0.35 -0.22 16 23 C -0.22 -1.19 9.51 -26.69 -0.25 -1.45 16 24 C -0.17 -0.99 9.99 -26.69 -0.27 -1.26 16 25 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.33 7.52 -51.93 -0.39 -0.06 16 27 H 0.06 0.39 6.33 -51.93 -0.33 0.06 16 28 H 0.06 0.68 6.80 -51.93 -0.35 0.32 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.41 3.57 8.13 -40.82 -0.33 3.23 16 31 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.06 1.25 8.10 -51.93 -0.42 0.82 16 34 H 0.06 1.25 8.10 -51.94 -0.42 0.83 16 35 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 40 H 0.04 0.24 5.31 -51.93 -0.28 -0.04 16 41 H 0.07 0.47 6.63 -51.92 -0.34 0.12 16 42 H 0.07 0.61 6.58 -51.93 -0.34 0.27 16 43 H 0.12 0.61 7.93 -51.93 -0.41 0.20 16 44 H 0.10 0.56 5.90 -51.93 -0.31 0.25 16 45 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 47 H 0.10 0.64 7.56 -51.93 -0.39 0.24 16 LS Contribution 370.78 15.07 5.59 5.59 Total: -1.00 -33.56 370.78 -9.77 -43.34 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -8.50 Total: -1.81 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: -1.35 Total: -14.54 kcal Atomic # 7 Polarization: -39.02 SS G_CDS: -0.58 Total: -39.60 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.09 Total: -10.15 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.56 -9.77 -43.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588343393.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.915 kcal (2) G-P(sol) polarization free energy of solvation -33.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds