Wall clock time and date at job start Tue Mar 31 2020 05:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47375 * 2 1 4 4 N 1.46504 * 109.47417 * 120.00052 * 2 1 3 5 5 C 1.34774 * 119.99618 * 275.00242 * 4 2 1 6 6 O 1.21584 * 120.00489 * 359.97438 * 5 4 2 7 7 N 1.34779 * 120.00064 * 179.97438 * 5 4 2 8 8 C 1.46493 * 120.00493 * 179.97438 * 7 5 4 9 9 C 1.52995 * 109.47390 * 179.97438 * 8 7 5 10 10 C 1.52999 * 109.47199 * 300.00027 * 9 8 7 11 11 C 1.52997 * 109.47243 * 60.00122 * 9 8 7 12 12 C 1.53003 * 109.47353 * 180.02562 * 9 8 7 13 13 C 1.50696 * 109.47251 * 180.02562 * 12 9 8 14 14 H 1.07997 * 119.99945 * 359.97438 * 13 12 9 15 15 C 1.37879 * 119.99770 * 179.97438 * 13 12 9 16 16 N 1.31514 * 120.00364 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99940 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.46946 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47185 * 120.00046 * 17 15 13 20 20 H 1.48499 * 109.46970 * 240.00350 * 17 15 13 21 21 C 1.53006 * 109.47164 * 239.99966 * 2 1 3 22 22 C 1.53781 * 113.61476 * 157.49826 * 21 2 1 23 23 C 1.53779 * 87.07812 * 220.01608 * 22 21 2 24 24 C 1.53776 * 113.61550 * 59.99962 * 21 2 1 25 25 H 1.09000 * 109.47140 * 59.99983 * 1 2 3 26 26 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46777 * 300.00555 * 1 2 3 28 28 H 0.96990 * 120.00057 * 94.99539 * 4 2 1 29 29 H 0.97007 * 119.99688 * 359.97438 * 7 5 4 30 30 H 1.08999 * 109.47347 * 300.00376 * 8 7 5 31 31 H 1.09003 * 109.47063 * 59.99809 * 8 7 5 32 32 H 1.08996 * 109.47044 * 59.99358 * 10 9 8 33 33 H 1.08998 * 109.47559 * 180.02562 * 10 9 8 34 34 H 1.09003 * 109.46983 * 299.99966 * 10 9 8 35 35 H 1.08999 * 109.47090 * 59.99691 * 11 9 8 36 36 H 1.09006 * 109.47139 * 180.02562 * 11 9 8 37 37 H 1.09002 * 109.47169 * 300.00173 * 11 9 8 38 38 H 1.08999 * 109.46707 * 300.00142 * 12 9 8 39 39 H 1.09003 * 109.47244 * 59.99780 * 12 9 8 40 40 H 0.96998 * 120.00372 * 179.97438 * 16 15 13 41 41 H 1.08997 * 112.84405 * 288.80059 * 21 2 1 42 42 H 1.08993 * 113.61731 * 334.56827 * 22 21 2 43 43 H 1.08999 * 113.61144 * 105.46995 * 22 21 2 44 44 H 1.08997 * 113.61529 * 270.88346 * 23 22 21 45 45 H 1.09006 * 113.69033 * 139.99076 * 23 22 21 46 46 H 1.09003 * 113.61248 * 254.53555 * 24 21 2 47 47 H 1.09003 * 113.61486 * 25.42978 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1471 -0.0182 2.3571 6 8 1.8583 1.1616 2.4116 7 7 2.5959 -0.6536 3.4577 8 6 2.7363 0.0773 4.7195 9 6 3.2594 -0.8692 5.8017 10 6 2.2740 -2.0246 5.9886 11 6 4.6214 -1.4238 5.3794 12 6 3.4055 -0.1060 7.1197 13 6 3.9214 -1.0381 8.1855 14 1 4.1243 -2.0717 7.9468 15 6 4.1342 -0.5714 9.4653 16 7 3.8866 0.6870 9.7561 17 14 4.7730 -1.7271 10.7867 18 1 4.9697 -3.0804 10.2079 19 1 6.0680 -1.2182 11.3056 20 1 3.7896 -1.8012 11.8970 21 6 2.0400 -0.7213 -1.2493 22 6 3.4727 -0.3277 -1.6461 23 6 2.9921 -0.3574 -3.1066 24 6 1.5811 -0.0724 -2.5657 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 2.2490 -1.6317 1.1526 29 1 2.8260 -1.5950 3.4143 30 1 3.4380 0.9007 4.5863 31 1 1.7659 0.4720 5.0206 32 1 2.1695 -2.5684 5.0498 33 1 2.6464 -2.6987 6.7599 34 1 1.3037 -1.6294 6.2895 35 1 5.3234 -0.6007 5.2462 36 1 4.9939 -2.0985 6.1503 37 1 4.5169 -1.9677 4.4405 38 1 4.1073 0.7174 6.9869 39 1 2.4350 0.2888 7.4205 40 1 4.0360 1.0153 10.6566 41 1 1.8759 -1.7982 -1.2128 42 1 3.7639 0.6647 -1.3023 43 1 4.2151 -1.0916 -1.4151 44 1 3.0896 -1.3351 -3.5785 45 1 3.3969 0.4497 -3.7173 46 1 0.7965 -0.6301 -3.0772 47 1 1.3552 0.9900 -2.4734 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588637773.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:39 Heat of formation + Delta-G solvation = -40.575263 kcal Electronic energy + Delta-G solvation = -22642.447117 eV Core-core repulsion = 19438.853526 eV Total energy + Delta-G solvation = -3203.593591 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.20558 -39.02976 -37.16796 -34.72919 -33.53907 -32.11008 -30.35627 -27.08425 -26.48484 -26.44674 -25.74942 -25.52277 -23.01371 -21.68879 -20.58617 -19.77368 -18.61448 -17.61269 -16.60175 -16.22581 -15.46603 -15.24625 -15.09971 -14.56033 -14.24807 -13.90401 -13.85751 -13.34916 -13.01965 -12.86334 -12.75880 -12.72241 -12.31537 -12.09898 -12.04823 -11.91578 -11.41590 -11.11819 -11.00717 -10.82585 -10.79921 -10.63331 -10.62489 -10.52503 -10.37314 -10.21620 -9.93127 -9.84998 -9.17754 -9.07106 -8.89582 -8.48972 -8.34803 -5.98614 -3.99742 2.90826 3.30824 3.38896 3.41233 3.48013 4.23396 4.33485 4.37155 4.45966 4.53699 4.62921 4.95228 5.10173 5.30743 5.36985 5.40941 5.43354 5.46953 5.53903 5.59161 5.64036 5.67831 5.68776 5.78188 5.82351 5.96232 6.10805 6.20622 6.21119 6.25756 6.32661 6.44935 6.62459 6.63949 6.65467 6.85270 7.09270 7.10141 7.12019 7.20113 7.66682 7.79072 8.00450 8.26529 8.42420 8.87194 9.05404 9.63285 11.12914 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.040578 B = 0.002808 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.869192 B = 9969.180006 C =10162.518500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.171 3.829 3 H 0.087 0.913 4 N -0.746 5.746 5 C 0.700 3.300 6 O -0.595 6.595 7 N -0.738 5.738 8 C 0.147 3.853 9 C -0.072 4.072 10 C -0.126 4.126 11 C -0.126 4.126 12 C 0.035 3.965 13 C -0.509 4.509 14 H 0.060 0.940 15 C 0.055 3.945 16 N -0.894 5.894 17 Si 0.888 3.112 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.285 1.285 21 C -0.119 4.119 22 C -0.135 4.135 23 C -0.144 4.144 24 C -0.129 4.129 25 H 0.062 0.938 26 H 0.053 0.947 27 H 0.062 0.938 28 H 0.392 0.608 29 H 0.393 0.607 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.028 0.972 33 H 0.066 0.934 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.066 0.934 37 H 0.028 0.972 38 H 0.019 0.981 39 H 0.019 0.981 40 H 0.259 0.741 41 H 0.092 0.908 42 H 0.083 0.917 43 H 0.066 0.934 44 H 0.078 0.922 45 H 0.067 0.933 46 H 0.068 0.932 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.559 -5.665 -23.634 24.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.066 3.934 3 H 0.105 0.895 4 N -0.402 5.402 5 C 0.400 3.600 6 O -0.474 6.474 7 N -0.393 5.393 8 C 0.024 3.976 9 C -0.073 4.073 10 C -0.183 4.183 11 C -0.183 4.183 12 C -0.002 4.002 13 C -0.548 4.548 14 H 0.078 0.922 15 C -0.146 4.146 16 N -0.534 5.534 17 Si 0.717 3.283 18 H -0.198 1.198 19 H -0.212 1.212 20 H -0.211 1.211 21 C -0.138 4.138 22 C -0.172 4.172 23 C -0.182 4.182 24 C -0.167 4.167 25 H 0.081 0.919 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.225 0.775 29 H 0.227 0.773 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.047 0.953 33 H 0.085 0.915 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.085 0.915 37 H 0.047 0.953 38 H 0.037 0.963 39 H 0.037 0.963 40 H 0.069 0.931 41 H 0.110 0.890 42 H 0.101 0.899 43 H 0.085 0.915 44 H 0.097 0.903 45 H 0.086 0.914 46 H 0.087 0.913 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.818 -4.421 -23.408 24.126 hybrid contribution 0.546 -1.464 0.862 1.785 sum -3.271 -5.886 -22.546 23.530 Atomic orbital electron populations 1.22180 0.95703 1.01848 1.02428 1.20767 0.93585 0.96888 0.82162 0.89532 1.45194 1.72491 1.13403 1.09083 1.16039 0.78464 0.85173 0.80360 1.90903 1.57350 1.14470 1.84663 1.45378 1.70469 1.13826 1.09645 1.21463 1.00883 0.94448 0.80820 1.20904 0.94513 0.95479 0.96355 1.21748 0.98915 0.98117 0.99524 1.21746 0.96897 1.00648 0.98998 1.19098 0.97385 0.95027 0.88712 1.21220 1.43174 0.96289 0.94093 0.92224 1.25020 0.95884 0.94975 0.98680 1.69975 1.49107 1.14125 1.20183 0.86597 0.78537 0.81127 0.82082 1.19824 1.21150 1.21147 1.22849 0.96942 1.00186 0.93812 1.22948 0.96124 1.02214 0.95932 1.22825 0.96808 1.01872 0.96665 1.22872 0.97025 1.01291 0.95535 0.91873 0.92786 0.91924 0.77513 0.77263 0.92110 0.92119 0.95327 0.91526 0.93404 0.93396 0.91533 0.95329 0.96311 0.96311 0.93105 0.88955 0.89875 0.91521 0.90305 0.91433 0.91327 0.89756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 9.29 37.16 0.35 -1.25 16 2 C 0.17 1.74 2.40 -67.93 -0.16 1.57 16 3 H 0.09 1.08 7.38 -51.93 -0.38 0.69 16 4 N -0.75 -8.34 5.08 -58.67 -0.30 -8.64 16 5 C 0.70 10.92 8.53 -86.92 -0.74 10.18 16 6 O -0.60 -11.86 16.01 5.29 0.08 -11.77 16 7 N -0.74 -11.01 4.96 -65.23 -0.32 -11.33 16 8 C 0.15 2.68 4.56 -4.05 -0.02 2.66 16 9 C -0.07 -1.38 0.54 -154.51 -0.08 -1.46 16 10 C -0.13 -2.22 8.05 37.16 0.30 -1.92 16 11 C -0.13 -2.22 8.05 37.16 0.30 -1.92 16 12 C 0.04 0.87 4.04 -27.88 -0.11 0.76 16 13 C -0.51 -13.57 7.65 -34.44 -0.26 -13.83 16 14 H 0.06 1.53 5.68 -52.49 -0.30 1.23 16 15 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 16 N -0.89 -26.55 13.29 55.43 0.74 -25.81 16 17 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 18 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 21 C -0.12 -0.88 3.31 -89.81 -0.30 -1.17 16 22 C -0.13 -1.02 7.63 -25.92 -0.20 -1.22 16 23 C -0.14 -0.91 8.08 -25.92 -0.21 -1.12 16 24 C -0.13 -0.84 6.68 -25.92 -0.17 -1.01 16 25 H 0.06 0.52 7.45 -51.93 -0.39 0.13 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.39 3.33 8.62 -40.82 -0.35 2.98 16 29 H 0.39 4.90 6.18 -40.82 -0.25 4.65 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 33 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 34 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 37 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 38 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 41 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.08 0.72 7.96 -51.93 -0.41 0.31 16 43 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.08 0.56 8.10 -51.93 -0.42 0.14 16 LS Contribution 366.93 15.07 5.53 5.53 Total: -1.00 -31.38 366.93 -9.24 -40.62 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -8.54 Total: 3.46 kcal Atomic # 6 Polarization: -6.88 SS G_CDS: -1.41 Total: -8.29 kcal Atomic # 7 Polarization: -45.90 SS G_CDS: 0.11 Total: -45.78 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.08 Total: -11.77 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.38 -9.24 -40.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588637773.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.047 kcal (2) G-P(sol) polarization free energy of solvation -31.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds