Wall clock time and date at job start Tue Mar 31 2020 05:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46902 * 109.46838 * 2 1 4 4 C 1.46906 * 110.99896 * 66.04861 * 3 2 1 5 5 C 1.53235 * 109.34079 * 172.74378 * 4 3 2 6 6 N 1.47084 * 108.51980 * 53.83022 * 5 4 3 7 7 C 1.34772 * 120.87969 * 128.79719 * 6 5 4 8 8 O 1.21283 * 119.99849 * 180.02562 * 7 6 5 9 9 C 1.50701 * 120.00156 * 0.02562 * 7 6 5 10 10 C 1.53006 * 109.47055 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.46994 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47137 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.47199 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99808 * 0.02562 * 13 12 11 15 15 C 1.37873 * 119.99709 * 180.02562 * 13 12 11 16 16 N 1.31508 * 120.00585 * 0.02562 * 15 13 12 17 17 Si 1.86808 * 119.99649 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47193 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.46778 * 120.00202 * 17 15 13 20 20 H 1.48493 * 109.46991 * 239.99847 * 17 15 13 21 21 C 1.47078 * 118.23662 * 308.81121 * 6 5 4 22 22 C 1.46898 * 111.00211 * 301.74701 * 3 2 1 23 23 H 1.08991 * 109.49497 * 67.29195 * 22 3 2 24 24 C 1.52996 * 109.49163 * 307.21221 * 22 3 2 25 25 H 1.09000 * 109.46946 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47292 * 299.99544 * 1 2 3 27 27 H 1.09005 * 109.47611 * 59.99789 * 1 2 3 28 28 H 1.09003 * 109.47238 * 240.00462 * 2 1 3 29 29 H 1.08997 * 109.47323 * 120.00138 * 2 1 3 30 30 H 1.08997 * 109.48796 * 292.70401 * 4 3 2 31 31 H 1.08997 * 109.49279 * 52.78272 * 4 3 2 32 32 H 1.08996 * 109.62602 * 173.53974 * 5 4 3 33 33 H 1.09001 * 109.62707 * 294.11706 * 5 4 3 34 34 H 1.09000 * 109.47101 * 300.00266 * 9 7 6 35 35 H 1.08996 * 109.46889 * 60.00597 * 9 7 6 36 36 H 1.09004 * 109.46809 * 300.00337 * 10 9 7 37 37 H 1.08999 * 109.46795 * 59.99899 * 10 9 7 38 38 H 1.09000 * 109.47108 * 300.00400 * 11 10 9 39 39 H 1.09005 * 109.46915 * 59.99977 * 11 10 9 40 40 H 1.08990 * 109.47500 * 300.00453 * 12 11 10 41 41 H 1.09005 * 109.47055 * 60.00285 * 12 11 10 42 42 H 0.97003 * 120.00657 * 179.97438 * 16 15 13 43 43 H 1.08996 * 109.63162 * 291.47937 * 21 6 5 44 44 H 1.08996 * 109.63022 * 170.89536 * 21 6 5 45 45 H 1.08995 * 109.47634 * 59.99858 * 24 22 3 46 46 H 1.09003 * 109.47343 * 180.02562 * 24 22 3 47 47 H 1.09010 * 109.47403 * 299.99920 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6701 2.0669 1.2534 5 6 2.3497 3.4398 1.2908 6 7 1.9940 4.1708 0.0650 7 6 1.5031 5.4244 0.1251 8 8 1.2146 6.0122 -0.8958 9 6 1.3125 6.0959 1.4607 10 6 0.7459 7.5013 1.2488 11 6 0.5531 8.1832 2.6047 12 6 -0.0129 9.5888 2.3928 13 6 -0.2034 10.2602 3.7285 14 1 0.0539 9.7369 4.6375 15 6 -0.7062 11.5426 3.7898 16 7 -1.0200 12.1796 2.6830 17 14 -0.9417 12.3752 5.4455 18 1 -0.5159 11.4527 6.5284 19 1 -0.1217 13.6121 5.4985 20 1 -2.3741 12.7228 5.6253 21 6 2.1881 3.4971 -1.2280 22 6 1.5147 2.1219 -1.1662 23 1 0.4359 2.2488 -1.0771 24 6 1.8337 1.3395 -2.4417 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 0.5891 2.1946 1.3087 31 1 2.0100 1.4696 2.0994 32 1 2.0039 3.9959 2.1621 33 1 3.4311 3.3118 1.3401 34 1 0.6184 5.5120 2.0652 35 1 2.2721 6.1641 1.9732 36 1 1.4397 8.0853 0.6441 37 1 -0.2137 7.4326 0.7364 38 1 -0.1404 7.5992 3.2098 39 1 1.5130 8.2518 3.1167 40 1 0.6809 10.1725 1.7880 41 1 -0.9727 9.5206 1.8807 42 1 -1.3741 13.0817 2.7262 43 1 3.2538 3.3746 -1.4208 44 1 1.7354 4.0910 -2.0219 45 1 1.3567 0.3605 -2.3964 46 1 1.4594 1.8868 -3.3069 47 1 2.9129 1.2140 -2.5307 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588656170.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:25 Heat of formation + Delta-G solvation = -51.167755 kcal Electronic energy + Delta-G solvation = -22537.808318 eV Core-core repulsion = 19333.755403 eV Total energy + Delta-G solvation = -3204.052915 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.53577 -38.77037 -35.35424 -34.89760 -33.15608 -32.50854 -30.88685 -29.76751 -27.83419 -26.87550 -25.17587 -23.35335 -23.16646 -22.09354 -20.10667 -19.87905 -18.75485 -17.08090 -16.49733 -16.16582 -15.94185 -15.75487 -15.67114 -14.68974 -14.58701 -14.38976 -14.28016 -13.50970 -13.33241 -13.00512 -12.71148 -12.62883 -12.50669 -12.32827 -12.16496 -12.06637 -11.84071 -11.63883 -11.53631 -11.36240 -11.16049 -10.99529 -10.96559 -10.51821 -10.46701 -10.37887 -9.72146 -9.59260 -9.19985 -8.96247 -8.95120 -8.52989 -8.29388 -5.93861 -3.96309 2.71636 2.85897 3.34011 3.41124 3.45094 3.48674 4.36808 4.49501 4.50292 4.54621 4.68458 4.79910 4.86235 4.95033 4.95754 5.00051 5.06329 5.26059 5.29567 5.34335 5.35914 5.41093 5.41916 5.46076 5.50788 5.58134 5.63872 5.69685 5.74205 5.88180 5.93952 6.15997 6.28335 6.37213 6.57484 6.64988 6.67848 6.86382 7.03944 7.21899 7.35348 7.76185 7.92176 8.07823 8.24027 8.49625 9.11715 9.67337 11.17532 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.034755 B = 0.002613 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.438213 B =10714.381952 C =11107.544469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.048 3.952 3 N -0.532 5.532 4 C 0.037 3.963 5 C 0.111 3.889 6 N -0.623 5.623 7 C 0.515 3.485 8 O -0.536 6.536 9 C -0.137 4.137 10 C -0.103 4.103 11 C -0.110 4.110 12 C 0.019 3.981 13 C -0.519 4.519 14 H 0.055 0.945 15 C 0.055 3.945 16 N -0.895 5.895 17 Si 0.891 3.109 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C 0.121 3.879 22 C 0.065 3.935 23 H 0.049 0.951 24 C -0.147 4.147 25 H 0.060 0.940 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.042 0.958 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.046 0.954 39 H 0.047 0.953 40 H 0.016 0.984 41 H 0.016 0.984 42 H 0.259 0.741 43 H 0.071 0.929 44 H 0.094 0.906 45 H 0.061 0.939 46 H 0.063 0.937 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.167 -27.654 -5.928 29.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.080 4.080 3 N -0.256 5.256 4 C -0.091 4.091 5 C -0.012 4.012 6 N -0.358 5.358 7 C 0.304 3.696 8 O -0.412 6.412 9 C -0.177 4.177 10 C -0.141 4.141 11 C -0.147 4.147 12 C -0.018 4.018 13 C -0.557 4.557 14 H 0.073 0.927 15 C -0.146 4.146 16 N -0.535 5.535 17 Si 0.719 3.281 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.211 1.211 21 C -0.002 4.002 22 C -0.044 4.044 23 H 0.067 0.933 24 C -0.205 4.205 25 H 0.080 0.920 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.099 0.901 29 H 0.093 0.907 30 H 0.060 0.940 31 H 0.106 0.894 32 H 0.111 0.889 33 H 0.094 0.906 34 H 0.107 0.893 35 H 0.109 0.891 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.034 0.966 41 H 0.034 0.966 42 H 0.069 0.931 43 H 0.090 0.910 44 H 0.112 0.888 45 H 0.080 0.920 46 H 0.082 0.918 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.456 -27.151 -6.573 28.914 hybrid contribution -1.081 0.418 1.034 1.553 sum 6.375 -26.734 -5.539 28.036 Atomic orbital electron populations 1.22452 0.98141 1.02406 1.02312 1.22216 0.92973 0.89821 1.02994 1.62212 1.59357 1.02108 1.01966 1.22516 0.98782 0.95145 0.92680 1.21848 1.00448 0.91522 0.87390 1.48261 1.65345 1.14948 1.07225 1.21121 0.75623 0.80399 0.92438 1.90691 1.49979 1.63533 1.36976 1.21815 1.03208 0.98865 0.93806 1.21462 1.01217 0.92015 0.99435 1.21645 1.00034 0.99028 0.94018 1.19101 0.96112 0.89716 0.96850 1.21322 1.42157 0.99232 0.93017 0.92708 1.25045 0.95731 0.97518 0.96321 1.69983 1.44345 1.12575 1.26589 0.86560 0.77715 0.79475 0.84383 1.19781 1.21051 1.21064 1.21686 1.00776 0.91290 0.86479 1.22019 0.97636 0.93648 0.91065 0.93284 1.21879 1.02755 1.00008 0.95891 0.92046 0.92482 0.92296 0.90127 0.90659 0.93951 0.89413 0.88855 0.90568 0.89314 0.89128 0.91783 0.91878 0.93536 0.93468 0.96572 0.96611 0.93105 0.91045 0.88772 0.91999 0.91780 0.91470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.23 9.08 37.16 0.34 -0.89 16 2 C 0.05 0.29 5.51 -3.82 -0.02 0.27 16 3 N -0.53 -4.13 4.68 -226.35 -1.06 -5.18 16 4 C 0.04 0.28 5.16 -3.70 -0.02 0.26 16 5 C 0.11 0.94 6.50 -3.60 -0.02 0.91 16 6 N -0.62 -7.20 3.01 -172.46 -0.52 -7.72 16 7 C 0.51 7.65 7.71 -10.99 -0.08 7.57 16 8 O -0.54 -10.14 15.43 5.56 0.09 -10.05 16 9 C -0.14 -1.90 4.07 -27.88 -0.11 -2.02 16 10 C -0.10 -1.90 4.50 -26.73 -0.12 -2.02 16 11 C -0.11 -2.29 5.15 -26.73 -0.14 -2.43 16 12 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 13 C -0.52 -15.08 9.11 -34.44 -0.31 -15.40 16 14 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 15 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -27.76 13.29 55.43 0.74 -27.02 16 17 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 18 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 21 C 0.12 1.27 5.88 -3.60 -0.02 1.25 16 22 C 0.07 0.56 1.97 -67.59 -0.13 0.43 16 23 H 0.05 0.49 6.70 -51.93 -0.35 0.14 16 24 C -0.15 -0.99 8.61 37.16 0.32 -0.67 16 25 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.06 0.40 6.72 -51.93 -0.35 0.05 16 27 H 0.06 0.42 6.17 -51.93 -0.32 0.10 16 28 H 0.08 0.46 6.31 -51.93 -0.33 0.13 16 29 H 0.07 0.41 8.05 -51.93 -0.42 0.00 16 30 H 0.04 0.36 6.83 -51.93 -0.35 0.00 16 31 H 0.09 0.52 8.04 -51.93 -0.42 0.10 16 32 H 0.09 0.69 6.02 -51.93 -0.31 0.38 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.09 1.07 7.66 -51.93 -0.40 0.67 16 35 H 0.09 1.09 8.00 -51.93 -0.42 0.68 16 36 H 0.06 1.26 8.10 -51.93 -0.42 0.84 16 37 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 38 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 43 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.09 1.15 7.06 -51.93 -0.37 0.78 16 45 H 0.06 0.37 5.96 -51.93 -0.31 0.06 16 46 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 LS Contribution 360.00 15.07 5.43 5.43 Total: -1.00 -33.65 360.00 -9.44 -43.10 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: -8.52 Total: -4.73 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: -0.57 Total: -10.83 kcal Atomic # 7 Polarization: -39.08 SS G_CDS: -0.84 Total: -39.92 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.09 Total: -10.05 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.65 -9.44 -43.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588656170.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.072 kcal (2) G-P(sol) polarization free energy of solvation -33.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds