Wall clock time and date at job start Tue Mar 31 2020 05:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.51676 * 2 1 4 4 C 1.52786 * 109.56803 * 240.07401 * 2 1 3 5 5 N 1.47074 * 108.76740 * 186.37014 * 4 2 1 6 6 C 1.34777 * 120.87940 * 231.12463 * 5 4 2 7 7 O 1.21288 * 119.99593 * 179.72199 * 6 5 4 8 8 C 1.50697 * 120.00369 * 359.72041 * 6 5 4 9 9 C 1.53001 * 109.47291 * 179.97438 * 8 6 5 10 10 C 1.53000 * 109.46886 * 179.97438 * 9 8 6 11 11 C 1.52997 * 109.47060 * 180.02562 * 10 9 8 12 12 C 1.50697 * 109.47466 * 180.02562 * 11 10 9 13 13 H 1.08001 * 119.99890 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00428 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99563 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00432 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.46616 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47104 * 119.99966 * 16 14 12 19 19 H 1.48489 * 109.47200 * 240.00246 * 16 14 12 20 20 C 1.47083 * 118.23791 * 50.85318 * 5 4 2 21 21 H 1.09004 * 109.63044 * 189.18633 * 20 5 4 22 22 C 1.53002 * 109.62789 * 68.79809 * 20 5 4 23 23 C 1.53244 * 108.51846 * 309.08699 * 20 5 4 24 24 N 1.46898 * 109.33636 * 53.83376 * 23 20 5 25 25 C 1.46911 * 110.99646 * 172.74489 * 24 23 20 26 26 H 1.08994 * 109.46864 * 299.93438 * 1 2 3 27 27 H 1.08995 * 109.47227 * 59.94048 * 1 2 3 28 28 H 1.09002 * 109.46671 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.55336 * 66.55293 * 4 2 1 30 30 H 1.08995 * 109.45823 * 306.13027 * 4 2 1 31 31 H 1.09001 * 109.46613 * 59.99889 * 8 6 5 32 32 H 1.09002 * 109.47120 * 300.00240 * 8 6 5 33 33 H 1.09001 * 109.46652 * 60.00253 * 9 8 6 34 34 H 1.08992 * 109.47514 * 300.00342 * 9 8 6 35 35 H 1.09002 * 109.47398 * 300.00496 * 10 9 8 36 36 H 1.09001 * 109.47194 * 60.00677 * 10 9 8 37 37 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 38 38 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 39 39 H 0.97002 * 119.99731 * 180.02562 * 15 14 12 40 40 H 1.08998 * 109.46630 * 60.00125 * 22 20 5 41 41 H 1.08998 * 109.46754 * 179.97438 * 22 20 5 42 42 H 1.08998 * 109.46768 * 300.00257 * 22 20 5 43 43 H 1.09007 * 109.48685 * 173.78578 * 23 20 5 44 44 H 1.08994 * 109.49554 * 293.86736 * 23 20 5 45 45 H 1.08996 * 109.46929 * 56.04406 * 25 24 23 46 46 H 1.08998 * 109.46730 * 176.04235 * 25 24 23 47 47 H 1.08998 * 109.46638 * 296.03995 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0417 -0.7182 -1.2477 5 7 3.5042 -0.8433 -1.1553 6 6 4.2977 -0.4492 -2.1709 7 8 5.5022 -0.5550 -2.0756 8 6 3.6885 0.1227 -3.4250 9 6 4.7997 0.4878 -4.4113 10 6 4.1810 1.0679 -5.6847 11 6 5.2922 1.4324 -6.6713 12 6 4.6829 2.0043 -7.9253 13 1 3.6104 2.0989 -8.0100 14 6 5.4947 2.4080 -8.9641 15 7 6.8008 2.2933 -8.8607 16 14 4.7394 3.1163 -10.5189 17 1 3.2606 3.1378 -10.3853 18 1 5.2375 4.5000 -10.7252 19 1 5.1197 2.2748 -11.6817 20 6 4.0782 -1.4042 0.0773 21 1 5.1615 -1.2836 0.0647 22 6 3.7276 -2.8901 0.1777 23 6 3.4866 -0.6535 1.2752 24 7 2.0202 -0.6938 1.1985 25 6 1.4139 -0.1358 2.4148 26 1 -0.3633 0.5128 0.8905 27 1 -0.3633 0.5147 -0.8894 28 1 -0.3633 -1.0277 -0.0005 29 1 1.7788 -0.1413 -2.1344 30 1 1.5924 -1.7095 -1.3060 31 1 3.1162 1.0164 -3.1759 32 1 3.0283 -0.6168 -3.8782 33 1 5.3723 -0.4057 -4.6604 34 1 5.4595 1.2274 -3.9579 35 1 3.5214 0.3279 -6.1380 36 1 3.6082 1.9613 -5.4360 37 1 5.9521 2.1723 -6.2182 38 1 5.8648 0.5389 -6.9200 39 1 7.3719 2.5776 -9.5914 40 1 4.1348 -3.4185 -0.6843 41 1 4.1545 -3.3031 1.0916 42 1 2.6441 -3.0071 0.1971 43 1 3.8157 -1.1276 2.2000 44 1 3.8235 0.3829 1.2574 45 1 1.7842 0.8770 2.5734 46 1 0.3300 -0.1129 2.3027 47 1 1.6778 -0.7574 3.2703 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588662966.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:04 Heat of formation + Delta-G solvation = -49.593818 kcal Electronic energy + Delta-G solvation = -22745.616748 eV Core-core repulsion = 19541.632084 eV Total energy + Delta-G solvation = -3203.984664 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.61694 -38.53791 -35.23997 -34.81885 -33.65944 -32.51728 -30.60027 -29.35259 -27.89427 -26.35416 -25.67680 -24.30217 -22.89498 -21.54733 -20.39195 -19.94491 -18.60243 -17.16830 -16.43173 -16.12211 -15.85399 -15.67607 -15.30349 -14.85036 -14.45162 -14.33928 -14.14248 -13.56812 -13.35638 -13.11026 -12.66762 -12.53565 -12.37470 -12.23256 -12.14498 -11.96572 -11.75387 -11.69181 -11.52031 -11.40802 -11.31854 -10.98158 -10.88188 -10.51571 -10.46531 -10.37670 -9.69531 -9.59079 -9.19480 -8.96789 -8.94788 -8.54627 -8.29204 -5.93801 -3.96191 2.72451 2.83655 3.34073 3.41167 3.45137 3.49039 4.35373 4.43138 4.50412 4.57112 4.77477 4.82093 4.90184 4.97571 5.10130 5.15153 5.21017 5.30350 5.30478 5.35863 5.36856 5.40452 5.41503 5.43333 5.50410 5.58786 5.66115 5.81298 5.83489 5.90813 6.10880 6.16334 6.30982 6.42140 6.57792 6.61589 6.66158 6.86634 7.04240 7.22180 7.37462 7.76315 7.92327 8.07980 8.25373 8.49768 9.11836 9.67414 11.17610 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.030098 B = 0.002828 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.079122 B = 9900.327830 C =10502.550536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.064 3.936 3 H 0.046 0.954 4 C 0.116 3.884 5 N -0.618 5.618 6 C 0.515 3.485 7 O -0.535 6.535 8 C -0.137 4.137 9 C -0.103 4.103 10 C -0.110 4.110 11 C 0.019 3.981 12 C -0.519 4.519 13 H 0.055 0.945 14 C 0.054 3.946 15 N -0.895 5.895 16 Si 0.891 3.109 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.284 1.284 20 C 0.139 3.861 21 H 0.101 0.899 22 C -0.151 4.151 23 C 0.048 3.952 24 N -0.534 5.534 25 C 0.019 3.981 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.092 0.908 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.046 0.954 36 H 0.046 0.954 37 H 0.015 0.985 38 H 0.016 0.984 39 H 0.259 0.741 40 H 0.053 0.947 41 H 0.061 0.939 42 H 0.068 0.932 43 H 0.086 0.914 44 H 0.038 0.962 45 H 0.024 0.976 46 H 0.076 0.924 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.696 -7.558 23.974 28.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.045 4.045 3 H 0.064 0.936 4 C -0.008 4.008 5 N -0.353 5.353 6 C 0.305 3.695 7 O -0.411 6.411 8 C -0.177 4.177 9 C -0.141 4.141 10 C -0.147 4.147 11 C -0.018 4.018 12 C -0.557 4.557 13 H 0.073 0.927 14 C -0.146 4.146 15 N -0.535 5.535 16 Si 0.719 3.281 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.210 1.210 20 C 0.036 3.964 21 H 0.119 0.881 22 C -0.209 4.209 23 C -0.081 4.081 24 N -0.260 5.260 25 C -0.129 4.129 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.111 0.889 30 H 0.094 0.906 31 H 0.107 0.893 32 H 0.108 0.892 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.034 0.966 38 H 0.034 0.966 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.087 0.913 43 H 0.104 0.896 44 H 0.056 0.944 45 H 0.043 0.957 46 H 0.094 0.906 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.006 -8.067 23.872 28.356 hybrid contribution -0.157 1.293 -0.732 1.495 sum -13.163 -6.773 23.139 27.469 Atomic orbital electron populations 1.21910 0.93327 1.03016 1.02388 1.21949 0.95916 0.95994 0.90609 0.93583 1.21778 0.79955 1.01420 0.97598 1.48347 1.06701 1.63557 1.16674 1.21111 0.86962 0.76853 0.84572 1.90691 1.14677 1.54749 1.81020 1.21818 1.00969 1.01599 0.93324 1.21458 0.96130 1.01627 0.94893 1.21644 0.99842 0.98833 0.94401 1.19099 0.93211 0.96650 0.92806 1.21323 0.93040 1.40898 1.00465 0.92711 1.25049 0.94841 0.96076 0.98662 1.69991 1.02989 1.48082 1.32428 0.86557 0.79373 0.78748 0.83439 1.19775 1.21071 1.21049 1.21230 0.99112 0.93381 0.82688 0.88123 1.21978 1.02854 0.94432 1.01614 1.22502 0.87447 0.99297 0.98868 1.61973 1.06386 1.55311 1.02286 1.22479 1.00542 0.97670 0.92220 0.91932 0.91532 0.91379 0.88938 0.90568 0.89346 0.89157 0.91791 0.91876 0.93476 0.93542 0.96617 0.96575 0.93112 0.92741 0.91957 0.91279 0.89573 0.94386 0.95703 0.90573 0.91325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 8.75 37.16 0.32 -0.54 16 2 C 0.06 0.50 2.59 -67.82 -0.18 0.33 16 3 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 4 C 0.12 1.01 5.36 -3.84 -0.02 0.99 16 5 N -0.62 -7.17 2.71 -165.20 -0.45 -7.61 16 6 C 0.52 7.69 7.71 -10.99 -0.08 7.60 16 7 O -0.54 -10.13 15.43 5.55 0.09 -10.05 16 8 C -0.14 -1.92 4.07 -27.88 -0.11 -2.03 16 9 C -0.10 -1.90 4.50 -26.73 -0.12 -2.02 16 10 C -0.11 -2.29 5.15 -26.73 -0.14 -2.43 16 11 C 0.02 0.52 4.97 -27.89 -0.14 0.38 16 12 C -0.52 -15.09 9.11 -34.44 -0.31 -15.40 16 13 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 14 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 15 N -0.90 -27.77 13.29 55.43 0.74 -27.03 16 16 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 17 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 19 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 20 C 0.14 1.48 3.23 -67.49 -0.22 1.26 16 21 H 0.10 1.25 7.06 -51.93 -0.37 0.89 16 22 C -0.15 -1.38 9.21 37.16 0.34 -1.04 16 23 C 0.05 0.41 5.01 -3.70 -0.02 0.40 16 24 N -0.53 -4.21 4.22 -234.86 -0.99 -5.20 16 25 C 0.02 0.12 9.27 60.07 0.56 0.67 16 26 H 0.06 0.33 6.14 -51.93 -0.32 0.01 16 27 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.09 0.73 6.02 -51.93 -0.31 0.42 16 30 H 0.08 0.63 7.65 -51.93 -0.40 0.23 16 31 H 0.09 1.08 7.65 -51.93 -0.40 0.68 16 32 H 0.09 1.10 8.01 -51.93 -0.42 0.68 16 33 H 0.06 1.26 8.10 -51.93 -0.42 0.84 16 34 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 35 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 40 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.63 7.09 -51.93 -0.37 0.26 16 43 H 0.09 0.63 8.11 -51.93 -0.42 0.20 16 44 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 45 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 46 H 0.08 0.40 5.72 -51.93 -0.30 0.11 16 47 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 364.29 15.07 5.49 5.49 Total: -1.00 -33.57 364.29 -9.11 -42.68 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -8.75 Total: -4.98 kcal Atomic # 6 Polarization: -10.10 SS G_CDS: -0.21 Total: -10.32 kcal Atomic # 7 Polarization: -39.14 SS G_CDS: -0.70 Total: -39.84 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.09 Total: -10.05 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.57 -9.11 -42.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588662966.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.911 kcal (2) G-P(sol) polarization free energy of solvation -33.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds