Wall clock time and date at job start Tue Mar 31 2020 05:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.49066 * 2 1 4 4 C 1.53239 * 109.49409 * 239.91828 * 2 1 3 5 5 N 1.47080 * 108.52031 * 186.20894 * 4 2 1 6 6 C 1.34773 * 120.88467 * 231.16187 * 5 4 2 7 7 O 1.21274 * 120.00311 * 185.58810 * 6 5 4 8 8 C 1.50702 * 119.99541 * 5.58770 * 6 5 4 9 9 C 1.53003 * 109.46952 * 179.97438 * 8 6 5 10 10 C 1.52995 * 109.47353 * 180.02562 * 9 8 6 11 11 C 1.53002 * 109.47293 * 180.02562 * 10 9 8 12 12 C 1.50702 * 109.46892 * 179.97438 * 11 10 9 13 13 H 1.07998 * 120.00307 * 0.02562 * 12 11 10 14 14 C 1.37877 * 119.99685 * 179.97438 * 12 11 10 15 15 N 1.31510 * 120.00173 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 119.99910 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.46941 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.46727 * 120.00474 * 16 14 12 19 19 H 1.48493 * 109.47234 * 240.00368 * 16 14 12 20 20 C 1.47090 * 118.23423 * 51.18747 * 5 4 2 21 21 H 1.09001 * 109.78630 * 68.61814 * 20 5 4 22 22 C 1.53000 * 109.62561 * 189.10084 * 20 5 4 23 23 C 1.53240 * 108.51882 * 308.81070 * 20 5 4 24 24 N 1.46894 * 109.49171 * 120.05170 * 2 1 3 25 25 C 1.46902 * 111.00240 * 307.21420 * 24 2 1 26 26 H 1.09001 * 109.47339 * 299.94866 * 1 2 3 27 27 H 1.08997 * 109.47241 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47064 * 59.94551 * 1 2 3 29 29 H 1.09002 * 109.62534 * 305.92235 * 4 2 1 30 30 H 1.09000 * 109.62586 * 66.50014 * 4 2 1 31 31 H 1.09002 * 109.47364 * 299.99947 * 8 6 5 32 32 H 1.08998 * 109.47119 * 60.00331 * 8 6 5 33 33 H 1.09002 * 109.47217 * 300.00251 * 9 8 6 34 34 H 1.09010 * 109.47026 * 60.00123 * 9 8 6 35 35 H 1.09002 * 109.47039 * 300.00208 * 10 9 8 36 36 H 1.08999 * 109.47186 * 59.99575 * 10 9 8 37 37 H 1.08996 * 109.46745 * 299.99365 * 11 10 9 38 38 H 1.08998 * 109.47246 * 59.99916 * 11 10 9 39 39 H 0.97003 * 120.00514 * 179.97438 * 15 14 12 40 40 H 1.08992 * 109.46937 * 171.17562 * 22 20 5 41 41 H 1.08999 * 109.47466 * 291.18132 * 22 20 5 42 42 H 1.09010 * 109.46705 * 51.17612 * 22 20 5 43 43 H 1.08991 * 109.49362 * 293.86996 * 23 20 5 44 44 H 1.09002 * 109.50968 * 173.80724 * 23 20 5 45 45 H 1.08997 * 109.47117 * 59.99903 * 25 24 2 46 46 H 1.08996 * 109.47255 * 180.02562 * 25 24 2 47 47 H 1.08997 * 109.47331 * 300.00153 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0414 -0.7241 -1.2500 5 7 3.5043 -0.8434 -1.1551 6 6 4.2978 -0.4500 -2.1709 7 8 5.4931 -0.6482 -2.1185 8 6 3.6997 0.2362 -3.3720 9 6 4.8085 0.5761 -4.3699 10 6 4.2015 1.2733 -5.5890 11 6 5.3103 1.6126 -6.5872 12 6 4.7122 2.2988 -7.7882 13 1 3.6478 2.4757 -7.8347 14 6 5.5240 2.7018 -8.8272 15 7 6.8202 2.4869 -8.7704 16 14 4.7826 3.5518 -10.3163 17 1 3.3135 3.6728 -10.1367 18 1 5.3765 4.9052 -10.4603 19 1 5.0685 2.7535 -11.5353 20 6 4.0782 -1.4041 0.0777 21 1 3.8313 -2.4633 0.1512 22 6 5.5982 -1.2307 0.0621 23 6 3.4866 -0.6532 1.2753 24 7 2.0201 -0.6935 1.1986 25 6 1.4139 -0.1353 2.4147 26 1 -0.3634 0.5130 0.8904 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5147 -0.8895 29 1 1.5957 -1.7172 -1.3058 30 1 1.7776 -0.1508 -2.1388 31 1 2.9748 -0.4261 -3.8453 32 1 3.2021 1.1531 -3.0562 33 1 5.5331 1.2385 -3.8963 34 1 5.3066 -0.3407 -4.6858 35 1 3.4767 0.6112 -6.0627 36 1 3.7037 2.1900 -5.2728 37 1 6.0353 2.2746 -6.1137 38 1 5.8077 0.6957 -6.9033 39 1 7.3914 2.7700 -9.5015 40 1 6.0048 -1.5015 1.0364 41 1 6.0297 -1.8753 -0.7037 42 1 5.8430 -0.1914 -0.1578 43 1 3.8235 0.3832 1.2573 44 1 3.8156 -1.1266 2.2004 45 1 0.3308 -0.2467 2.3648 46 1 1.7944 -0.6664 3.2871 47 1 1.6670 0.9219 2.4946 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588662967.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:06 Heat of formation + Delta-G solvation = -38.214408 kcal Electronic energy + Delta-G solvation = -22814.423122 eV Core-core repulsion = 19610.931906 eV Total energy + Delta-G solvation = -3203.491216 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.70639 -38.52162 -35.24854 -34.77080 -33.77292 -32.50952 -30.67972 -29.27496 -28.10128 -25.81734 -25.51974 -24.35620 -22.98076 -21.43728 -20.60737 -19.94934 -18.86162 -16.83809 -16.44065 -16.15215 -16.00240 -15.71269 -15.23574 -14.85055 -14.63740 -14.44329 -13.96407 -13.42848 -13.32238 -12.96544 -12.59362 -12.49887 -12.40141 -12.32821 -12.02690 -11.94017 -11.77186 -11.70869 -11.53005 -11.44887 -11.19655 -11.16203 -10.97945 -10.51213 -10.45789 -10.37296 -9.59396 -9.32483 -9.05360 -8.95194 -8.86946 -8.53767 -8.29607 -5.94134 -3.96551 2.72498 2.84069 3.33808 3.40941 3.44900 3.47174 4.37992 4.43288 4.50248 4.56528 4.74994 4.82863 4.93288 5.01246 5.10203 5.15226 5.18326 5.30065 5.32196 5.36971 5.38177 5.41419 5.44367 5.47324 5.50611 5.62508 5.65730 5.83253 5.89099 6.06888 6.16270 6.23542 6.32846 6.52658 6.57789 6.61262 6.68312 6.86411 7.03864 7.21865 7.39434 7.75907 7.91946 8.07562 8.28581 8.49435 9.11470 9.67101 11.17253 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027894 B = 0.002921 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.562910 B = 9583.521751 C =10367.668251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.065 3.935 3 H 0.047 0.953 4 C 0.117 3.883 5 N -0.621 5.621 6 C 0.515 3.485 7 O -0.527 6.527 8 C -0.140 4.140 9 C -0.102 4.102 10 C -0.110 4.110 11 C 0.020 3.980 12 C -0.519 4.519 13 H 0.055 0.945 14 C 0.055 3.945 15 N -0.895 5.895 16 Si 0.891 3.109 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C 0.149 3.851 21 H 0.076 0.924 22 C -0.139 4.139 23 C 0.045 3.955 24 N -0.539 5.539 25 C 0.022 3.978 26 H 0.061 0.939 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.046 0.954 36 H 0.045 0.955 37 H 0.015 0.985 38 H 0.016 0.984 39 H 0.259 0.741 40 H 0.044 0.956 41 H 0.082 0.918 42 H 0.064 0.936 43 H 0.039 0.961 44 H 0.085 0.915 45 H 0.074 0.926 46 H 0.067 0.933 47 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.846 -7.390 23.551 27.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.045 4.045 3 H 0.065 0.935 4 C -0.007 4.007 5 N -0.356 5.356 6 C 0.305 3.695 7 O -0.403 6.403 8 C -0.180 4.180 9 C -0.140 4.140 10 C -0.147 4.147 11 C -0.017 4.017 12 C -0.557 4.557 13 H 0.073 0.927 14 C -0.146 4.146 15 N -0.535 5.535 16 Si 0.719 3.281 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.210 1.210 20 C 0.045 3.955 21 H 0.094 0.906 22 C -0.197 4.197 23 C -0.084 4.084 24 N -0.264 5.264 25 C -0.126 4.126 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.094 0.906 30 H 0.112 0.888 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.034 0.966 38 H 0.034 0.966 39 H 0.069 0.931 40 H 0.062 0.938 41 H 0.101 0.899 42 H 0.083 0.917 43 H 0.057 0.943 44 H 0.104 0.896 45 H 0.093 0.907 46 H 0.086 0.914 47 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -12.167 -7.954 23.432 27.575 hybrid contribution -0.241 1.381 -0.675 1.556 sum -12.408 -6.573 22.757 26.740 Atomic orbital electron populations 1.21894 0.93317 1.03002 1.02403 1.22049 0.95953 0.95940 0.90523 0.93505 1.21888 0.79736 1.01431 0.97609 1.48330 1.06670 1.64062 1.16537 1.21042 0.86851 0.77926 0.83709 1.90730 1.15346 1.55048 1.79138 1.21855 1.01065 1.00744 0.94288 1.21450 0.96155 1.01409 0.95003 1.21644 0.99881 0.98297 0.94923 1.19098 0.93217 0.96657 0.92769 1.21325 0.93826 1.37742 1.02852 0.92717 1.25045 0.94847 0.96206 0.98508 1.69984 1.03524 1.47537 1.32442 0.86561 0.79323 0.79291 0.82970 1.19774 1.21069 1.21044 1.21290 0.94411 0.97210 0.82564 0.90633 1.22157 0.92385 1.04298 1.00812 1.22607 0.87181 0.99619 0.98978 1.61970 1.06502 1.55529 1.02386 1.22433 1.00629 0.97455 0.92114 0.92025 0.91386 0.91520 0.90551 0.88830 0.89301 0.89449 0.91895 0.91782 0.93503 0.93576 0.96624 0.96581 0.93107 0.93753 0.89890 0.91679 0.94315 0.89646 0.90692 0.91372 0.95676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 8.72 37.16 0.32 -0.57 16 2 C 0.06 0.52 2.60 -67.59 -0.18 0.34 16 3 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 4 C 0.12 1.03 5.80 -3.60 -0.02 1.01 16 5 N -0.62 -7.19 3.01 -164.92 -0.50 -7.69 16 6 C 0.52 7.45 7.47 -10.99 -0.08 7.37 16 7 O -0.53 -9.29 11.70 5.56 0.07 -9.23 16 8 C -0.14 -1.93 4.06 -27.88 -0.11 -2.04 16 9 C -0.10 -1.86 4.50 -26.73 -0.12 -1.98 16 10 C -0.11 -2.29 5.15 -26.73 -0.14 -2.42 16 11 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 12 C -0.52 -15.07 9.11 -34.44 -0.31 -15.38 16 13 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 14 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 15 N -0.90 -27.71 13.29 55.43 0.74 -26.97 16 16 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 17 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 18 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 19 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 20 C 0.15 1.59 3.65 -67.48 -0.25 1.34 16 21 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 22 C -0.14 -1.66 7.64 37.16 0.28 -1.37 16 23 C 0.04 0.40 4.91 -3.70 -0.02 0.38 16 24 N -0.54 -4.48 4.73 -234.59 -1.11 -5.59 16 25 C 0.02 0.14 9.01 60.07 0.54 0.68 16 26 H 0.06 0.34 6.32 -51.93 -0.33 0.01 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.09 0.74 6.01 -51.93 -0.31 0.43 16 31 H 0.09 1.07 7.78 -51.93 -0.40 0.67 16 32 H 0.09 1.07 7.89 -51.93 -0.41 0.66 16 33 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 34 H 0.06 1.24 8.10 -51.92 -0.42 0.82 16 35 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.26 7.52 8.31 -40.82 -0.34 7.19 16 40 H 0.04 0.43 8.13 -51.93 -0.42 0.00 16 41 H 0.08 1.17 6.64 -51.93 -0.34 0.82 16 42 H 0.06 0.91 6.93 -51.92 -0.36 0.55 16 43 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.09 0.65 8.06 -51.93 -0.42 0.23 16 45 H 0.07 0.42 6.20 -51.93 -0.32 0.09 16 46 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 47 H 0.02 0.17 8.14 -51.93 -0.42 -0.26 16 LS Contribution 360.50 15.07 5.43 5.43 Total: -1.00 -32.90 360.50 -9.48 -42.38 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -8.77 Total: -4.60 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: -0.32 Total: -10.73 kcal Atomic # 7 Polarization: -39.38 SS G_CDS: -0.87 Total: -40.24 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: 0.07 Total: -9.23 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.90 -9.48 -42.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588662967.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.166 kcal (2) G-P(sol) polarization free energy of solvation -32.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds