Wall clock time and date at job start Tue Mar 31 2020 05:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.79409 * 2 1 4 4 C 1.52782 * 109.55743 * 239.76779 * 2 1 3 5 5 N 1.46900 * 109.42475 * 186.61816 * 4 2 1 6 6 C 1.46901 * 111.00014 * 187.11751 * 5 4 2 7 7 C 1.46891 * 111.27244 * 62.96034 * 5 4 2 8 8 H 1.09002 * 109.49308 * 56.85765 * 7 5 4 9 9 C 1.53002 * 109.51773 * 176.92427 * 7 5 4 10 10 C 1.53240 * 109.34349 * 296.89950 * 7 5 4 11 11 N 1.47074 * 108.52056 * 53.82384 * 10 7 5 12 12 C 1.34780 * 120.87980 * 128.81867 * 11 10 7 13 13 O 1.21275 * 120.00113 * 174.44736 * 12 11 10 14 14 C 1.50703 * 119.99780 * 354.44805 * 12 11 10 15 15 C 1.53002 * 109.47221 * 179.97438 * 14 12 11 16 16 C 1.52997 * 109.47476 * 179.97438 * 15 14 12 17 17 C 1.52994 * 109.47261 * 180.02562 * 16 15 14 18 18 C 1.50698 * 109.47258 * 180.02562 * 17 16 15 19 19 H 1.08003 * 119.99771 * 359.97438 * 18 17 16 20 20 C 1.37872 * 120.00326 * 180.02562 * 18 17 16 21 21 N 1.31514 * 119.99974 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00171 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47355 * 59.99681 * 22 20 18 24 24 H 1.48504 * 109.46881 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.46779 * 299.99381 * 22 20 18 26 26 H 1.09004 * 109.47011 * 307.86360 * 1 2 3 27 27 H 1.08995 * 109.46763 * 67.85856 * 1 2 3 28 28 H 1.08992 * 109.47793 * 187.85891 * 1 2 3 29 29 H 1.08991 * 109.56862 * 66.55964 * 4 2 1 30 30 H 1.09002 * 109.35919 * 306.53900 * 4 2 1 31 31 H 1.09003 * 109.46845 * 295.68738 * 6 5 4 32 32 H 1.08998 * 109.47471 * 55.69178 * 6 5 4 33 33 H 1.09003 * 109.47143 * 175.69775 * 6 5 4 34 34 H 1.08998 * 109.47524 * 179.88013 * 9 7 5 35 35 H 1.09007 * 109.47280 * 299.88411 * 9 7 5 36 36 H 1.09008 * 109.46956 * 59.87732 * 9 7 5 37 37 H 1.09004 * 109.62607 * 294.11759 * 10 7 5 38 38 H 1.08997 * 109.63060 * 173.54337 * 10 7 5 39 39 H 1.08993 * 109.47448 * 59.99935 * 14 12 11 40 40 H 1.09001 * 109.47115 * 299.99552 * 14 12 11 41 41 H 1.08998 * 109.46988 * 300.00242 * 15 14 12 42 42 H 1.09003 * 109.46963 * 59.99676 * 15 14 12 43 43 H 1.08998 * 109.46854 * 300.00435 * 16 15 14 44 44 H 1.09002 * 109.46737 * 59.99646 * 16 15 14 45 45 H 1.09001 * 109.46811 * 299.99860 * 17 16 15 46 46 H 1.08992 * 109.47541 * 60.00092 * 17 16 15 47 47 H 0.96998 * 120.00237 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8991 1.0256 0.0000 4 6 2.0414 -0.7249 -1.2439 5 7 3.5017 -0.8627 -1.1632 6 6 4.0495 -1.4026 -2.4148 7 6 3.8963 -1.6902 -0.0155 8 1 3.4144 -2.6653 -0.0874 9 6 5.4157 -1.8706 -0.0137 10 6 3.4619 -0.9995 1.2815 11 7 2.0240 -0.7028 1.1939 12 6 1.1806 -1.0701 2.1788 13 8 0.0171 -0.7302 2.1390 14 6 1.6833 -1.9032 3.3297 15 6 0.5334 -2.1782 4.3008 16 6 1.0436 -3.0245 5.4688 17 6 -0.1064 -3.3001 6.4395 18 6 0.3963 -4.1331 7.5903 19 1 1.4323 -4.4361 7.6256 20 6 -0.4666 -4.5094 8.5977 21 7 -1.7283 -4.1408 8.5545 22 14 0.1563 -5.5426 10.0238 23 1 1.2363 -4.8094 10.7318 24 1 -0.9599 -5.8099 10.9661 25 1 0.6878 -6.8295 9.5075 26 1 -0.3633 0.6308 0.8113 27 1 -0.3633 0.3873 -0.9519 28 1 -0.3634 -1.0179 0.1405 29 1 1.7787 -0.1529 -2.1336 30 1 1.5854 -1.7134 -1.2991 31 1 3.6751 -2.4147 -2.5685 32 1 3.7422 -0.7709 -3.2483 33 1 5.1377 -1.4228 -2.3562 34 1 5.7079 -2.4830 0.8393 35 1 5.7244 -2.3619 -0.9365 36 1 5.8973 -0.8952 0.0571 37 1 4.0202 -0.0718 1.4071 38 1 3.6486 -1.6599 2.1283 39 1 2.4760 -1.3648 3.8490 40 1 2.0734 -2.8480 2.9511 41 1 0.1437 -1.2333 4.6793 42 1 -0.2596 -2.7165 3.7817 43 1 1.4331 -3.9694 5.0899 44 1 1.8369 -2.4866 5.9879 45 1 -0.4962 -2.3553 6.8184 46 1 -0.8993 -3.8381 5.9202 47 1 -2.3355 -4.4058 9.2630 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588662968.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:08 Heat of formation + Delta-G solvation = -38.120253 kcal Electronic energy + Delta-G solvation = -22815.762208 eV Core-core repulsion = 19612.275075 eV Total energy + Delta-G solvation = -3203.487133 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.71590 -38.52505 -35.25241 -34.77063 -33.78974 -32.50938 -30.68071 -29.27749 -28.10288 -25.81781 -25.51937 -24.36105 -22.98016 -21.43683 -20.60740 -19.94847 -18.86065 -16.84155 -16.44426 -16.14780 -16.00396 -15.71062 -15.24100 -14.85097 -14.63922 -14.44956 -13.96570 -13.43011 -13.32327 -12.96267 -12.58452 -12.49899 -12.40003 -12.32890 -12.03077 -11.93797 -11.77147 -11.70706 -11.53759 -11.45071 -11.19581 -11.16162 -10.95046 -10.50917 -10.49852 -10.36875 -9.58877 -9.31978 -9.06448 -8.95956 -8.87181 -8.53872 -8.28809 -5.93665 -3.96274 2.72405 2.83986 3.36144 3.40464 3.42691 3.47039 4.38131 4.43358 4.50416 4.56914 4.74837 4.82883 4.92999 5.01754 5.10168 5.15159 5.18240 5.30162 5.32146 5.36970 5.38195 5.41633 5.44289 5.47374 5.50551 5.62487 5.65655 5.83208 5.89107 6.06903 6.16321 6.23552 6.32861 6.52767 6.57836 6.61176 6.68227 6.86479 7.03922 7.21953 7.39469 7.75541 7.92156 8.07875 8.28615 8.49597 9.11306 9.67231 11.17674 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027908 B = 0.002921 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.057156 B = 9583.390474 C =10366.947121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.148 3.852 3 H 0.075 0.925 4 C 0.045 3.955 5 N -0.539 5.539 6 C 0.022 3.978 7 C 0.064 3.936 8 H 0.047 0.953 9 C -0.148 4.148 10 C 0.117 3.883 11 N -0.620 5.620 12 C 0.515 3.485 13 O -0.527 6.527 14 C -0.140 4.140 15 C -0.102 4.102 16 C -0.110 4.110 17 C 0.020 3.980 18 C -0.521 4.521 19 H 0.054 0.946 20 C 0.055 3.945 21 N -0.896 5.896 22 Si 0.891 3.109 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.277 1.277 26 H 0.083 0.917 27 H 0.044 0.956 28 H 0.064 0.936 29 H 0.086 0.914 30 H 0.038 0.962 31 H 0.025 0.975 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.045 0.955 44 H 0.046 0.954 45 H 0.016 0.984 46 H 0.015 0.985 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.804 7.432 -22.950 27.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.045 3.955 3 H 0.093 0.907 4 C -0.084 4.084 5 N -0.264 5.264 6 C -0.126 4.126 7 C -0.045 4.045 8 H 0.065 0.935 9 C -0.206 4.206 10 C -0.007 4.007 11 N -0.356 5.356 12 C 0.305 3.695 13 O -0.403 6.403 14 C -0.180 4.180 15 C -0.140 4.140 16 C -0.147 4.147 17 C -0.017 4.017 18 C -0.559 4.559 19 H 0.072 0.928 20 C -0.145 4.145 21 N -0.535 5.535 22 Si 0.719 3.281 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.203 1.203 26 H 0.102 0.898 27 H 0.063 0.937 28 H 0.083 0.917 29 H 0.104 0.896 30 H 0.057 0.943 31 H 0.043 0.957 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.095 0.905 38 H 0.112 0.888 39 H 0.107 0.893 40 H 0.106 0.894 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.064 0.936 44 H 0.065 0.935 45 H 0.034 0.966 46 H 0.034 0.966 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 13.184 8.065 -22.788 27.535 hybrid contribution 0.100 -1.453 0.569 1.563 sum 13.284 6.612 -22.220 26.719 Atomic orbital electron populations 1.22159 0.92248 1.04116 1.01157 1.21197 0.95522 0.95554 0.83209 0.90658 1.22528 0.87194 0.99981 0.98690 1.61967 1.10722 1.50487 1.03210 1.22434 1.00900 0.97872 0.91419 1.22048 0.96618 0.94755 0.91053 0.93512 1.21894 0.93604 1.02707 1.02403 1.21889 0.80734 1.00862 0.97187 1.48328 1.08027 1.59142 1.20100 1.21045 0.85758 0.79681 0.83034 1.90728 1.17745 1.54819 1.76964 1.21855 1.01523 0.99555 0.95019 1.21448 0.95866 1.01202 0.95500 1.21644 1.00253 0.97500 0.95352 1.19084 0.92855 0.96720 0.93002 1.21251 0.95699 1.32621 1.06349 0.92824 1.25039 0.94916 0.96333 0.98260 1.69964 1.03706 1.46133 1.33698 0.86675 0.78288 0.80807 0.82304 1.20278 1.21317 1.20297 0.89799 0.93742 0.91740 0.89609 0.94346 0.95672 0.91367 0.90696 0.91518 0.92026 0.91384 0.90545 0.88832 0.89305 0.89445 0.91779 0.91894 0.93581 0.93500 0.96596 0.96632 0.92989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 7.63 37.16 0.28 -1.38 16 2 C 0.15 1.59 3.63 -67.73 -0.25 1.34 16 3 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 4 C 0.04 0.40 4.88 -3.94 -0.02 0.38 16 5 N -0.54 -4.48 4.73 -234.88 -1.11 -5.59 16 6 C 0.02 0.14 9.01 60.07 0.54 0.68 16 7 C 0.06 0.52 2.60 -67.59 -0.18 0.34 16 8 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 9 C -0.15 -0.89 8.72 37.16 0.32 -0.57 16 10 C 0.12 1.03 5.80 -3.60 -0.02 1.01 16 11 N -0.62 -7.19 3.02 -165.20 -0.50 -7.69 16 12 C 0.52 7.46 7.47 -10.98 -0.08 7.37 16 13 O -0.53 -9.30 11.71 5.56 0.07 -9.23 16 14 C -0.14 -1.93 4.06 -27.88 -0.11 -2.04 16 15 C -0.10 -1.86 4.50 -26.73 -0.12 -1.98 16 16 C -0.11 -2.29 5.15 -26.74 -0.14 -2.43 16 17 C 0.02 0.55 4.97 -27.89 -0.14 0.41 16 18 C -0.52 -15.13 9.11 -34.44 -0.31 -15.45 16 19 H 0.05 1.49 7.74 -52.48 -0.41 1.09 16 20 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 21 N -0.90 -27.73 13.29 55.43 0.74 -27.00 16 22 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 26 H 0.08 1.18 6.60 -51.93 -0.34 0.84 16 27 H 0.04 0.43 8.13 -51.93 -0.42 0.00 16 28 H 0.06 0.90 6.97 -51.93 -0.36 0.54 16 29 H 0.09 0.65 8.06 -51.93 -0.42 0.23 16 30 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 33 H 0.07 0.42 6.21 -51.93 -0.32 0.09 16 34 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.34 6.33 -51.93 -0.33 0.01 16 36 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 37 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.09 0.74 6.01 -51.93 -0.31 0.43 16 39 H 0.09 1.07 7.78 -51.93 -0.40 0.67 16 40 H 0.09 1.07 7.89 -51.93 -0.41 0.66 16 41 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 42 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 43 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 360.47 15.07 5.43 5.43 Total: -1.00 -32.86 360.47 -9.49 -42.35 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -8.77 Total: -4.53 kcal Atomic # 6 Polarization: -10.43 SS G_CDS: -0.32 Total: -10.75 kcal Atomic # 7 Polarization: -39.40 SS G_CDS: -0.87 Total: -40.28 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.07 Total: -9.23 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.86 -9.49 -42.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588662968.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.231 kcal (2) G-P(sol) polarization free energy of solvation -32.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds