Wall clock time and date at job start Tue Mar 31 2020 05:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.79409 * 2 1 4 4 C 1.52782 * 109.55743 * 239.76779 * 2 1 3 5 5 N 1.46900 * 109.42475 * 186.61816 * 4 2 1 6 6 C 1.46901 * 111.00014 * 187.11751 * 5 4 2 7 7 C 1.46891 * 111.27244 * 62.96034 * 5 4 2 8 8 H 1.09002 * 109.49308 * 56.85765 * 7 5 4 9 9 C 1.53002 * 109.51773 * 176.92427 * 7 5 4 10 10 C 1.53240 * 109.34349 * 296.89950 * 7 5 4 11 11 N 1.47074 * 108.52056 * 53.82384 * 10 7 5 12 12 C 1.34780 * 120.87980 * 128.81867 * 11 10 7 13 13 O 1.21275 * 120.00113 * 174.44736 * 12 11 10 14 14 C 1.50703 * 119.99780 * 354.44805 * 12 11 10 15 15 C 1.53002 * 109.47221 * 179.97438 * 14 12 11 16 16 C 1.52997 * 109.47476 * 179.97438 * 15 14 12 17 17 C 1.52994 * 109.47261 * 180.02562 * 16 15 14 18 18 C 1.50698 * 109.47258 * 180.02562 * 17 16 15 19 19 H 1.08003 * 119.99771 * 359.97438 * 18 17 16 20 20 C 1.37872 * 120.00326 * 180.02562 * 18 17 16 21 21 N 1.31514 * 119.99974 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00171 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47355 * 59.99681 * 22 20 18 24 24 H 1.48504 * 109.46881 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.46779 * 299.99381 * 22 20 18 26 26 H 1.09004 * 109.47011 * 307.86360 * 1 2 3 27 27 H 1.08995 * 109.46763 * 67.85856 * 1 2 3 28 28 H 1.08992 * 109.47793 * 187.85891 * 1 2 3 29 29 H 1.08991 * 109.56862 * 66.55964 * 4 2 1 30 30 H 1.09002 * 109.35919 * 306.53900 * 4 2 1 31 31 H 1.09003 * 109.46845 * 295.68738 * 6 5 4 32 32 H 1.08998 * 109.47471 * 55.69178 * 6 5 4 33 33 H 1.09003 * 109.47143 * 175.69775 * 6 5 4 34 34 H 1.08998 * 109.47524 * 179.88013 * 9 7 5 35 35 H 1.09007 * 109.47280 * 299.88411 * 9 7 5 36 36 H 1.09008 * 109.46956 * 59.87732 * 9 7 5 37 37 H 1.09004 * 109.62607 * 294.11759 * 10 7 5 38 38 H 1.08997 * 109.63060 * 173.54337 * 10 7 5 39 39 H 1.08993 * 109.47448 * 59.99935 * 14 12 11 40 40 H 1.09001 * 109.47115 * 299.99552 * 14 12 11 41 41 H 1.08998 * 109.46988 * 300.00242 * 15 14 12 42 42 H 1.09003 * 109.46963 * 59.99676 * 15 14 12 43 43 H 1.08998 * 109.46854 * 300.00435 * 16 15 14 44 44 H 1.09002 * 109.46737 * 59.99646 * 16 15 14 45 45 H 1.09001 * 109.46811 * 299.99860 * 17 16 15 46 46 H 1.08992 * 109.47541 * 60.00092 * 17 16 15 47 47 H 0.96998 * 120.00237 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8991 1.0256 0.0000 4 6 2.0414 -0.7249 -1.2439 5 7 3.5017 -0.8627 -1.1632 6 6 4.0495 -1.4026 -2.4148 7 6 3.8963 -1.6902 -0.0155 8 1 3.4144 -2.6653 -0.0874 9 6 5.4157 -1.8706 -0.0137 10 6 3.4619 -0.9995 1.2815 11 7 2.0240 -0.7028 1.1939 12 6 1.1806 -1.0701 2.1788 13 8 0.0171 -0.7302 2.1390 14 6 1.6833 -1.9032 3.3297 15 6 0.5334 -2.1782 4.3008 16 6 1.0436 -3.0245 5.4688 17 6 -0.1064 -3.3001 6.4395 18 6 0.3963 -4.1331 7.5903 19 1 1.4323 -4.4361 7.6256 20 6 -0.4666 -4.5094 8.5977 21 7 -1.7283 -4.1408 8.5545 22 14 0.1563 -5.5426 10.0238 23 1 1.2363 -4.8094 10.7318 24 1 -0.9599 -5.8099 10.9661 25 1 0.6878 -6.8295 9.5075 26 1 -0.3633 0.6308 0.8113 27 1 -0.3633 0.3873 -0.9519 28 1 -0.3634 -1.0179 0.1405 29 1 1.7787 -0.1529 -2.1336 30 1 1.5854 -1.7134 -1.2991 31 1 3.6751 -2.4147 -2.5685 32 1 3.7422 -0.7709 -3.2483 33 1 5.1377 -1.4228 -2.3562 34 1 5.7079 -2.4830 0.8393 35 1 5.7244 -2.3619 -0.9365 36 1 5.8973 -0.8952 0.0571 37 1 4.0202 -0.0718 1.4071 38 1 3.6486 -1.6599 2.1283 39 1 2.4760 -1.3648 3.8490 40 1 2.0734 -2.8480 2.9511 41 1 0.1437 -1.2333 4.6793 42 1 -0.2596 -2.7165 3.7817 43 1 1.4331 -3.9694 5.0899 44 1 1.8369 -2.4866 5.9879 45 1 -0.4962 -2.3553 6.8184 46 1 -0.8993 -3.8381 5.9202 47 1 -2.3355 -4.4058 9.2630 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588662968.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:08 Heat of formation + Delta-G solvation = -59.047677 kcal Electronic energy + Delta-G solvation = -22816.669689 eV Core-core repulsion = 19612.275075 eV Total energy + Delta-G solvation = -3204.394615 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.65762 -39.40580 -36.76826 -35.81282 -34.96121 -34.21811 -31.80899 -30.68190 -28.79527 -27.46057 -26.38329 -25.06431 -24.51872 -22.69633 -21.64210 -21.32065 -19.86705 -18.42114 -17.78267 -17.35612 -16.85434 -16.72214 -16.49864 -15.92546 -15.87963 -15.50205 -15.00659 -14.67109 -14.50060 -14.09118 -13.77112 -13.67724 -13.53635 -13.29319 -13.17063 -13.02610 -12.84326 -12.76056 -12.66373 -12.49350 -12.35886 -12.26764 -12.14405 -12.07377 -11.91127 -11.84651 -11.38403 -11.32563 -11.08425 -10.54565 -10.14691 -9.74372 -9.29437 -8.18622 -6.31087 1.40145 1.44364 1.52191 1.62357 1.92388 2.41994 2.84539 3.13952 3.51534 3.76208 3.82189 3.99738 4.02845 4.11188 4.15561 4.18609 4.23233 4.49122 4.50855 4.58185 4.64335 4.65543 4.66221 4.68421 4.77485 4.79994 4.83071 4.87651 4.94137 4.97230 5.09688 5.15257 5.18363 5.27714 5.32878 5.36405 5.39429 5.55926 5.61611 5.77655 5.87688 5.98960 6.03701 6.25148 6.41700 6.87250 7.21063 7.38591 8.93537 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027908 B = 0.002921 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.057156 B = 9583.390474 C =10366.947121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.146 3.854 3 H 0.082 0.918 4 C 0.052 3.948 5 N -0.544 5.544 6 C 0.022 3.978 7 C 0.065 3.935 8 H 0.034 0.966 9 C -0.142 4.142 10 C 0.110 3.890 11 N -0.615 5.615 12 C 0.510 3.490 13 O -0.570 6.570 14 C -0.129 4.129 15 C -0.093 4.093 16 C -0.095 4.095 17 C 0.020 3.980 18 C -0.543 4.543 19 H 0.066 0.934 20 C -0.007 4.007 21 N -0.939 5.939 22 Si 0.970 3.030 23 H -0.264 1.264 24 H -0.285 1.285 25 H -0.264 1.264 26 H 0.057 0.943 27 H 0.067 0.933 28 H 0.038 0.962 29 H 0.103 0.897 30 H 0.025 0.975 31 H 0.021 0.979 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.087 0.913 38 H 0.107 0.893 39 H 0.115 0.885 40 H 0.111 0.889 41 H 0.043 0.957 42 H 0.041 0.959 43 H 0.059 0.941 44 H 0.061 0.939 45 H -0.016 1.016 46 H -0.017 1.017 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.039 6.970 -23.603 29.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.043 3.957 3 H 0.100 0.900 4 C -0.076 4.076 5 N -0.269 5.269 6 C -0.126 4.126 7 C -0.044 4.044 8 H 0.052 0.948 9 C -0.200 4.200 10 C -0.012 4.012 11 N -0.349 5.349 12 C 0.300 3.700 13 O -0.450 6.450 14 C -0.168 4.168 15 C -0.131 4.131 16 C -0.132 4.132 17 C -0.017 4.017 18 C -0.581 4.581 19 H 0.085 0.915 20 C -0.204 4.204 21 N -0.579 5.579 22 Si 0.793 3.207 23 H -0.188 1.188 24 H -0.211 1.211 25 H -0.189 1.189 26 H 0.076 0.924 27 H 0.086 0.914 28 H 0.057 0.943 29 H 0.121 0.879 30 H 0.043 0.957 31 H 0.040 0.960 32 H 0.095 0.905 33 H 0.105 0.895 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.105 0.895 38 H 0.125 0.875 39 H 0.133 0.867 40 H 0.129 0.871 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.003 0.997 46 H 0.002 0.998 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 16.478 7.606 -23.477 29.674 hybrid contribution -0.935 -1.267 0.717 1.730 sum 15.542 6.339 -22.760 28.280 Atomic orbital electron populations 1.21979 0.93491 1.01991 1.01292 1.21279 0.94554 0.96161 0.83730 0.89960 1.22427 0.87829 0.99201 0.98190 1.62005 1.09943 1.50820 1.04109 1.22491 1.01552 0.97751 0.90770 1.22066 0.97966 0.93863 0.90531 0.94781 1.21860 0.91744 1.03158 1.03225 1.22166 0.78811 1.01846 0.98358 1.48379 1.09018 1.58066 1.19459 1.21148 0.85475 0.79679 0.83719 1.90734 1.19589 1.56602 1.78030 1.21720 0.99994 1.01071 0.94039 1.21226 0.97072 0.99327 0.95477 1.21439 0.98085 0.98830 0.94866 1.19039 0.94202 0.94528 0.93963 1.21732 0.96430 1.32869 1.07060 0.91534 1.26100 0.94986 0.97678 1.01624 1.70127 1.05301 1.47546 1.34920 0.85436 0.77900 0.79162 0.78156 1.18845 1.21072 1.18877 0.92447 0.91416 0.94265 0.87920 0.95720 0.96013 0.90524 0.89471 0.90611 0.91356 0.91060 0.89485 0.87523 0.86661 0.87104 0.93773 0.94017 0.92206 0.92019 0.99728 0.99813 0.92837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 7.63 71.98 0.55 -2.62 16 2 C 0.15 2.99 3.63 44.81 0.16 3.16 16 3 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 4 C 0.05 0.86 4.88 86.23 0.42 1.28 16 5 N -0.54 -7.76 4.73 -897.03 -4.24 -12.01 16 6 C 0.02 0.23 9.01 127.69 1.15 1.38 16 7 C 0.06 0.89 2.60 45.00 0.12 1.01 16 8 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 9 C -0.14 -1.27 8.72 71.98 0.63 -0.64 16 10 C 0.11 1.68 5.80 86.35 0.50 2.18 16 11 N -0.62 -13.60 3.02 -794.95 -2.40 -16.00 16 12 C 0.51 14.69 7.47 87.66 0.65 15.34 16 13 O -0.57 -21.06 11.71 -3.01 -0.04 -21.10 16 14 C -0.13 -3.37 4.06 29.85 0.12 -3.25 16 15 C -0.09 -3.44 4.50 30.59 0.14 -3.30 16 16 C -0.09 -3.92 5.15 30.59 0.16 -3.77 16 17 C 0.02 1.10 4.97 29.85 0.15 1.25 16 18 C -0.54 -31.74 9.11 25.60 0.23 -31.51 16 19 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 20 C -0.01 -0.40 5.46 84.65 0.46 0.06 16 21 N -0.94 -59.57 13.29 21.45 0.28 -59.29 16 22 Si 0.97 44.98 29.54 68.60 2.03 47.01 16 23 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 24 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 25 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 26 H 0.06 1.71 6.60 -2.39 -0.02 1.69 16 27 H 0.07 1.28 8.13 -2.39 -0.02 1.26 16 28 H 0.04 1.14 6.97 -2.39 -0.02 1.13 16 29 H 0.10 1.33 8.06 -2.39 -0.02 1.31 16 30 H 0.02 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.02 0.25 8.14 -2.39 -0.02 0.23 16 32 H 0.08 0.68 8.08 -2.39 -0.02 0.66 16 33 H 0.09 0.71 6.21 -2.39 -0.01 0.69 16 34 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.07 0.54 6.33 -2.38 -0.02 0.52 16 36 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 37 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 38 H 0.11 1.34 6.01 -2.39 -0.01 1.32 16 39 H 0.12 2.44 7.78 -2.39 -0.02 2.42 16 40 H 0.11 2.42 7.89 -2.39 -0.02 2.40 16 41 H 0.04 1.78 8.10 -2.39 -0.02 1.76 16 42 H 0.04 1.69 8.10 -2.39 -0.02 1.67 16 43 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 44 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 45 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 46 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 47 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 Total: -1.00 -73.81 360.47 1.98 -71.83 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: 0.90 Total: 8.98 kcal Atomic # 6 Polarization: -24.88 SS G_CDS: 5.44 Total: -19.43 kcal Atomic # 7 Polarization: -80.93 SS G_CDS: -6.36 Total: -87.29 kcal Atomic # 8 Polarization: -21.06 SS G_CDS: -0.04 Total: -21.10 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -73.81 1.98 -71.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588662968.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.784 kcal (2) G-P(sol) polarization free energy of solvation -73.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds