Wall clock time and date at job start Tue Mar 31 2020 05:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46902 * 109.46795 * 2 1 4 4 C 1.46265 * 110.99933 * 64.83994 * 3 2 1 5 5 C 1.47547 * 114.37471 * 148.55973 * 4 3 2 6 6 C 1.54943 * 109.73420 * 62.21435 * 5 4 3 7 7 N 1.44677 * 109.52161 * 290.51846 * 6 5 4 8 8 C 1.34776 * 118.54940 * 269.08337 * 7 6 5 9 9 O 1.21286 * 120.00153 * 180.02562 * 8 7 6 10 10 C 1.50700 * 120.00166 * 0.02562 * 8 7 6 11 11 C 1.52999 * 109.47266 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.46949 * 179.97438 * 11 10 8 13 13 C 1.52999 * 109.46949 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.47266 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99601 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00031 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99818 * 179.97438 * 16 14 13 18 18 Si 1.86796 * 120.00127 * 0.02562 * 16 14 13 19 19 H 1.48492 * 109.47429 * 89.99595 * 18 16 14 20 20 H 1.48502 * 109.46919 * 210.00055 * 18 16 14 21 21 H 1.48498 * 109.46800 * 329.99331 * 18 16 14 22 22 C 1.47778 * 122.90306 * 89.36246 * 7 6 5 23 23 C 1.44770 * 111.00041 * 301.34381 * 3 2 1 24 24 H 1.08994 * 109.47148 * 305.04317 * 1 2 3 25 25 H 1.09001 * 109.47229 * 65.05315 * 1 2 3 26 26 H 1.09004 * 109.46593 * 185.04838 * 1 2 3 27 27 H 1.09002 * 109.46976 * 240.00491 * 2 1 3 28 28 H 1.08997 * 109.47627 * 120.00032 * 2 1 3 29 29 H 1.08990 * 108.50268 * 27.29080 * 4 3 2 30 30 H 1.09006 * 108.37626 * 269.73194 * 4 3 2 31 31 H 1.08998 * 109.42364 * 302.13400 * 5 4 3 32 32 H 1.08991 * 109.42455 * 182.29835 * 5 4 3 33 33 H 1.09004 * 109.45778 * 170.50537 * 6 5 4 34 34 H 1.09002 * 109.45971 * 50.53381 * 6 5 4 35 35 H 1.09008 * 109.46976 * 59.99870 * 10 8 7 36 36 H 1.08995 * 109.47125 * 300.00201 * 10 8 7 37 37 H 1.08995 * 109.47578 * 300.00371 * 11 10 8 38 38 H 1.09000 * 109.47019 * 60.00532 * 11 10 8 39 39 H 1.08995 * 109.47285 * 300.00552 * 12 11 10 40 40 H 1.09000 * 109.46825 * 60.00415 * 12 11 10 41 41 H 1.09004 * 109.47396 * 300.00367 * 13 12 11 42 42 H 1.09008 * 109.46864 * 60.00250 * 13 12 11 43 43 H 0.97000 * 120.00103 * 180.02562 * 17 16 14 44 44 H 1.09003 * 109.06264 * 78.37024 * 22 7 6 45 45 H 1.08998 * 109.06209 * 197.29988 * 22 7 6 46 46 H 1.08999 * 109.43472 * 337.92565 * 23 3 2 47 47 H 1.09000 * 109.43146 * 97.79336 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6469 2.0727 1.2360 5 6 2.6115 3.0986 1.6766 6 6 2.7117 4.2159 0.6078 7 7 3.3651 3.6971 -0.5742 8 6 4.7048 3.8078 -0.6706 9 8 5.2795 3.3823 -1.6503 10 6 5.4888 4.4604 0.4387 11 6 6.9766 4.4569 0.0821 12 6 7.7725 5.1200 1.2081 13 6 9.2604 5.1160 0.8518 14 6 10.0444 5.7686 1.9611 15 1 9.5326 6.1478 2.8332 16 6 11.4151 5.8804 1.8630 17 7 12.0992 6.4504 2.8309 18 14 12.3004 5.2238 0.3549 19 1 12.3886 6.2928 -0.6719 20 1 13.6683 4.7879 0.7346 21 1 11.5480 4.0684 -0.1967 22 6 2.6277 3.0564 -1.6831 23 6 1.5297 2.1085 -1.1543 24 1 -0.3633 0.5900 0.8413 25 1 -0.3634 0.4334 -0.9318 26 1 -0.3633 -1.0237 0.0904 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 1.5455 1.3305 2.0276 30 1 0.6788 2.5503 1.0850 31 1 3.5906 2.6400 1.8147 32 1 2.2772 3.5287 2.6206 33 1 3.2906 5.0490 1.0067 34 1 1.7108 4.5606 0.3479 35 1 5.3363 3.9071 1.3655 36 1 5.1483 5.4876 0.5686 37 1 7.3168 3.4296 -0.0476 38 1 7.1294 5.0100 -0.8447 39 1 7.4322 6.1474 1.3373 40 1 7.6198 4.5674 2.1351 41 1 9.6004 4.0884 0.7228 42 1 9.4135 5.6684 -0.0755 43 1 13.0635 6.5294 2.7618 44 1 2.1691 3.8298 -2.2993 45 1 3.3277 2.4855 -2.2931 46 1 1.2542 1.4005 -1.9360 47 1 0.6548 2.6936 -0.8710 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588753053.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:11 Heat of formation + Delta-G solvation = -45.627876 kcal Electronic energy + Delta-G solvation = -22781.720498 eV Core-core repulsion = 19577.907810 eV Total energy + Delta-G solvation = -3203.812688 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.48304 -38.74352 -35.72389 -35.00612 -33.16337 -32.49289 -31.37102 -29.94295 -27.87062 -26.35585 -25.73718 -23.63120 -22.74992 -21.35663 -20.28446 -19.96514 -18.76476 -17.11950 -16.78164 -16.51902 -16.06979 -15.62533 -15.52469 -14.66989 -14.49261 -14.34060 -14.10978 -13.69806 -13.49698 -13.11800 -12.92824 -12.63087 -12.59838 -12.36380 -12.12306 -11.99512 -11.76895 -11.66255 -11.62064 -11.30744 -11.19812 -11.03375 -10.91883 -10.63319 -10.44333 -9.83202 -9.68819 -9.58327 -9.31337 -9.06589 -8.67963 -8.58826 -8.45195 -5.96604 -3.93661 2.80396 2.99981 3.38951 3.45681 3.52620 3.54182 4.44328 4.52918 4.54185 4.55859 4.63748 4.71798 4.77300 4.95051 4.97031 5.06538 5.15182 5.17354 5.25849 5.33187 5.36201 5.38748 5.42964 5.47581 5.51604 5.55516 5.61645 5.72642 5.77615 5.85469 6.03350 6.12575 6.24321 6.46783 6.54747 6.76745 6.77551 6.81609 6.90689 7.06000 7.42167 7.44689 7.57211 7.89453 8.35156 8.62853 9.08610 9.67104 11.16949 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.031529 B = 0.002887 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.855687 B = 9696.811982 C = 9883.315447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.053 3.947 3 N -0.530 5.530 4 C 0.061 3.939 5 C -0.141 4.141 6 C 0.112 3.888 7 N -0.602 5.602 8 C 0.513 3.487 9 O -0.540 6.540 10 C -0.137 4.137 11 C -0.106 4.106 12 C -0.102 4.102 13 C -0.016 4.016 14 C -0.518 4.518 15 H 0.071 0.929 16 C 0.064 3.936 17 N -0.907 5.907 18 Si 0.879 3.121 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.264 1.264 22 C 0.119 3.881 23 C 0.046 3.954 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.065 0.935 30 H 0.034 0.966 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.070 0.930 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.052 0.948 40 H 0.052 0.948 41 H 0.015 0.985 42 H 0.011 0.989 43 H 0.262 0.738 44 H 0.060 0.940 45 H 0.091 0.909 46 H 0.078 0.922 47 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.793 -9.885 -5.226 30.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.075 4.075 3 N -0.253 5.253 4 C -0.066 4.066 5 C -0.180 4.180 6 C -0.012 4.012 7 N -0.335 5.335 8 C 0.303 3.697 9 O -0.417 6.417 10 C -0.177 4.177 11 C -0.144 4.144 12 C -0.139 4.139 13 C -0.053 4.053 14 C -0.556 4.556 15 H 0.089 0.911 16 C -0.137 4.137 17 N -0.546 5.546 18 Si 0.707 3.293 19 H -0.203 1.203 20 H -0.215 1.215 21 H -0.189 1.189 22 C -0.004 4.004 23 C -0.083 4.083 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.095 0.905 28 H 0.094 0.906 29 H 0.083 0.917 30 H 0.052 0.948 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.088 0.912 35 H 0.109 0.891 36 H 0.107 0.893 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.034 0.966 42 H 0.029 0.971 43 H 0.071 0.929 44 H 0.078 0.922 45 H 0.109 0.891 46 H 0.097 0.903 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -27.817 -10.082 -5.727 30.137 hybrid contribution -0.483 -0.284 -0.536 0.775 sum -28.300 -10.366 -6.264 30.782 Atomic orbital electron populations 1.22493 0.98106 1.02430 1.01940 1.22298 0.92675 0.89401 1.03131 1.60974 1.60339 1.01969 1.02065 1.20965 0.96731 0.96867 0.92049 1.21497 1.01503 0.96646 0.98366 1.21575 0.98351 0.95928 0.85373 1.47588 1.06787 1.59466 1.19704 1.21049 0.81747 0.78628 0.88319 1.90664 1.69218 1.48671 1.33150 1.21816 0.97252 1.01339 0.97289 1.21480 0.91096 1.01987 0.99822 1.21467 0.96847 0.99202 0.96409 1.19581 0.92081 0.96725 0.96931 1.21194 0.91841 1.37854 1.04676 0.91124 1.25042 0.97655 0.94812 0.96149 1.69924 1.07220 1.44683 1.32821 0.86772 0.78816 0.80115 0.83604 1.20340 1.21502 1.18856 1.21928 0.94635 0.95169 0.88664 1.22420 0.95639 0.96447 0.93833 0.92608 0.92585 0.92065 0.90506 0.90588 0.91668 0.94772 0.90445 0.90074 0.89717 0.91159 0.89114 0.89295 0.91867 0.91945 0.92960 0.92909 0.96623 0.97082 0.92866 0.92173 0.89057 0.90345 0.93856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.04 9.39 37.16 0.35 -0.69 16 2 C 0.05 0.37 5.71 -3.82 -0.02 0.34 16 3 N -0.53 -4.50 4.38 -239.34 -1.05 -5.54 16 4 C 0.06 0.45 3.85 -6.80 -0.03 0.42 16 5 C -0.14 -1.06 5.95 -28.34 -0.17 -1.23 16 6 C 0.11 0.90 5.22 -3.99 -0.02 0.88 16 7 N -0.60 -6.68 2.53 -171.99 -0.43 -7.12 16 8 C 0.51 7.51 7.63 -10.99 -0.08 7.43 16 9 O -0.54 -10.09 15.26 5.55 0.08 -10.01 16 10 C -0.14 -1.88 4.17 -27.88 -0.12 -2.00 16 11 C -0.11 -1.87 4.50 -26.73 -0.12 -2.00 16 12 C -0.10 -2.06 5.15 -26.73 -0.14 -2.20 16 13 C -0.02 -0.40 4.04 -27.88 -0.11 -0.51 16 14 C -0.52 -15.27 9.66 -34.44 -0.33 -15.60 16 15 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 16 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 17 N -0.91 -28.72 13.96 55.43 0.77 -27.94 16 18 Si 0.88 22.70 27.47 -169.99 -4.67 18.03 16 19 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 21 H -0.26 -6.64 6.54 56.52 0.37 -6.27 16 22 C 0.12 1.19 6.49 -2.61 -0.02 1.17 16 23 C 0.05 0.35 4.41 -4.23 -0.02 0.33 16 24 H 0.05 0.31 7.02 -51.93 -0.36 -0.05 16 25 H 0.06 0.30 7.03 -51.93 -0.37 -0.06 16 26 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 27 H 0.08 0.54 8.09 -51.93 -0.42 0.12 16 28 H 0.08 0.53 7.90 -51.93 -0.41 0.12 16 29 H 0.06 0.45 7.53 -51.93 -0.39 0.06 16 30 H 0.03 0.22 6.92 -51.93 -0.36 -0.14 16 31 H 0.08 0.74 7.42 -51.93 -0.39 0.36 16 32 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.64 6.18 -51.93 -0.32 0.32 16 34 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 35 H 0.09 1.11 7.27 -51.92 -0.38 0.74 16 36 H 0.09 1.05 7.30 -51.93 -0.38 0.67 16 37 H 0.06 1.19 8.10 -51.93 -0.42 0.77 16 38 H 0.06 1.16 8.10 -51.93 -0.42 0.74 16 39 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.02 0.40 7.20 -51.93 -0.37 0.02 16 42 H 0.01 0.27 7.57 -51.92 -0.39 -0.12 16 43 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 44 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.09 1.13 6.96 -51.93 -0.36 0.77 16 46 H 0.08 0.52 7.09 -51.93 -0.37 0.15 16 47 H 0.04 0.29 7.13 -51.93 -0.37 -0.08 16 LS Contribution 355.90 15.07 5.36 5.36 Total: -1.00 -34.54 355.90 -9.46 -43.99 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: -8.60 Total: -4.97 kcal Atomic # 6 Polarization: -10.89 SS G_CDS: -0.93 Total: -11.81 kcal Atomic # 7 Polarization: -39.89 SS G_CDS: -0.71 Total: -40.60 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.08 Total: -10.01 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -4.67 Total: 18.03 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.54 -9.46 -43.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588753053.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.634 kcal (2) G-P(sol) polarization free energy of solvation -34.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds