Wall clock time and date at job start Tue Mar 31 2020 05:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46898 * 109.47358 * 2 1 4 4 C 1.46894 * 111.00224 * 293.95852 * 3 2 1 5 5 C 1.53236 * 109.34241 * 187.24896 * 4 3 2 6 6 N 1.47082 * 108.52135 * 306.17078 * 5 4 3 7 7 C 1.34777 * 120.87943 * 231.18771 * 6 5 4 8 8 O 1.21280 * 119.99843 * 175.20901 * 7 6 5 9 9 C 1.50703 * 120.00264 * 355.20034 * 7 6 5 10 10 C 1.52997 * 109.47448 * 180.02562 * 9 7 6 11 11 C 1.52992 * 109.47313 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.47130 * 180.02562 * 11 10 9 13 13 C 1.50705 * 109.46908 * 180.02562 * 12 11 10 14 14 H 1.07995 * 120.00231 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99736 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99960 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00143 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47374 * 180.02562 * 17 15 13 19 19 H 1.48499 * 109.47353 * 300.00661 * 17 15 13 20 20 H 1.48511 * 109.46981 * 60.00240 * 17 15 13 21 21 C 1.47077 * 118.23844 * 51.45590 * 6 5 4 22 22 H 1.09004 * 109.62705 * 68.24976 * 21 6 5 23 23 C 1.52994 * 109.63007 * 188.83283 * 21 6 5 24 24 C 1.46903 * 110.99626 * 58.25941 * 3 2 1 25 25 H 1.08995 * 109.47224 * 59.99972 * 1 2 3 26 26 H 1.09003 * 109.47009 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47099 * 299.99522 * 1 2 3 28 28 H 1.09007 * 109.47119 * 240.00214 * 2 1 3 29 29 H 1.08997 * 109.47387 * 120.00554 * 2 1 3 30 30 H 1.09010 * 109.49613 * 67.28882 * 4 3 2 31 31 H 1.09000 * 109.49632 * 307.21256 * 4 3 2 32 32 H 1.09006 * 109.63122 * 186.46070 * 5 4 3 33 33 H 1.09005 * 109.78984 * 65.97722 * 5 4 3 34 34 H 1.09007 * 109.46842 * 60.00178 * 9 7 6 35 35 H 1.08994 * 109.47310 * 300.00653 * 9 7 6 36 36 H 1.09001 * 109.46609 * 60.00344 * 10 9 7 37 37 H 1.08999 * 109.47048 * 300.00948 * 10 9 7 38 38 H 1.09001 * 109.47252 * 60.00432 * 11 10 9 39 39 H 1.09007 * 109.47344 * 300.00068 * 11 10 9 40 40 H 1.08993 * 109.47259 * 59.99686 * 12 11 10 41 41 H 1.09002 * 109.46994 * 299.99635 * 12 11 10 42 42 H 0.97002 * 120.00186 * 359.97438 * 16 15 13 43 43 H 1.09005 * 109.47310 * 53.64574 * 23 21 6 44 44 H 1.08994 * 109.47305 * 173.64680 * 23 21 6 45 45 H 1.09002 * 109.47420 * 293.65030 * 23 21 6 46 46 H 1.09000 * 109.49095 * 292.70509 * 24 3 2 47 47 H 1.08995 * 109.49441 * 52.78611 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6702 2.0670 -1.2532 5 6 2.3498 3.4399 -1.2905 6 7 1.9942 4.1707 -0.0646 7 6 1.5035 5.4245 -0.1246 8 8 1.1343 5.9802 0.8882 9 6 1.4138 6.1361 -1.4500 10 6 0.8272 7.5335 -1.2400 11 6 0.7356 8.2556 -2.5857 12 6 0.1495 9.6533 -2.3756 13 6 0.0587 10.3643 -3.7012 14 1 0.3865 9.8692 -4.6032 15 6 -0.4430 11.6471 -3.7624 16 7 -0.8418 12.2503 -2.6639 17 14 -0.5550 12.5288 -5.4054 18 1 -1.1239 13.8853 -5.2015 19 1 0.8016 12.6455 -5.9981 20 1 -1.4313 11.7568 -6.3228 21 6 2.1940 3.4992 1.2286 22 1 3.2606 3.3768 1.4167 23 6 1.5638 4.3350 2.3444 24 6 1.5150 2.1217 1.1664 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 0.5890 2.1947 -1.3086 31 1 2.0100 1.4698 -2.0994 32 1 2.0040 3.9961 -2.1618 33 1 3.4315 3.3149 -1.3416 34 1 0.7712 5.5694 -2.1238 35 1 2.4098 6.2221 -1.8844 36 1 1.4702 8.0999 -0.5663 37 1 -0.1687 7.4479 -0.8053 38 1 0.0924 7.6890 -3.2590 39 1 1.7314 8.3412 -3.0207 40 1 0.7929 10.2196 -1.7024 41 1 -0.8463 9.5681 -1.9404 42 1 -0.7834 11.7926 -1.8107 43 1 0.5221 4.5422 2.0992 44 1 1.6133 3.7837 3.2834 45 1 2.1070 5.2746 2.4456 46 1 0.4360 2.2487 1.0773 47 1 1.7422 1.5643 2.0750 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588766796.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:32 Heat of formation + Delta-G solvation = -43.175732 kcal Electronic energy + Delta-G solvation = -22752.044020 eV Core-core repulsion = 19548.337664 eV Total energy + Delta-G solvation = -3203.706355 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.71732 -38.58806 -35.48497 -35.06580 -33.43958 -32.44891 -30.90358 -29.43689 -28.01317 -26.17340 -25.25197 -23.55788 -22.96023 -21.80058 -20.79925 -20.16579 -18.77479 -16.86537 -16.62872 -16.31893 -15.90744 -15.74396 -15.71664 -14.87607 -14.52055 -14.19030 -13.81336 -13.64970 -13.39877 -12.94639 -12.82745 -12.71349 -12.55631 -12.37691 -12.32795 -12.13675 -12.06992 -11.62404 -11.43317 -11.24812 -11.13752 -11.01382 -10.91710 -10.59305 -10.55472 -10.08332 -9.72927 -9.64943 -9.03405 -8.96075 -8.54034 -8.44700 -8.26141 -6.29489 -3.98041 2.67739 2.80692 3.46520 3.47990 3.49082 3.67868 4.35571 4.47712 4.57186 4.60146 4.68476 4.77002 4.82874 4.94533 4.97318 5.03716 5.08704 5.23067 5.28271 5.32283 5.35158 5.37821 5.46337 5.47888 5.52081 5.55988 5.65900 5.77199 5.81322 6.03239 6.06990 6.18453 6.23624 6.45246 6.50537 6.59381 6.64436 6.73251 6.89562 7.05982 7.34648 7.51383 7.64392 8.23514 8.29998 8.53606 8.95798 9.74727 11.11285 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.031135 B = 0.002765 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.084234 B =10125.460247 C =10620.807828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.051 3.949 3 N -0.537 5.537 4 C 0.037 3.963 5 C 0.111 3.889 6 N -0.619 5.619 7 C 0.515 3.485 8 O -0.528 6.528 9 C -0.139 4.139 10 C -0.103 4.103 11 C -0.103 4.103 12 C 0.007 3.993 13 C -0.602 4.602 14 H 0.047 0.953 15 C 0.012 3.988 16 N -0.915 5.915 17 Si 1.069 2.931 18 H -0.283 1.283 19 H -0.288 1.288 20 H -0.288 1.288 21 C 0.148 3.852 22 H 0.076 0.924 23 C -0.137 4.137 24 C 0.043 3.957 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.042 0.958 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.047 0.953 39 H 0.048 0.952 40 H 0.007 0.993 41 H 0.006 0.994 42 H 0.269 0.731 43 H 0.070 0.930 44 H 0.042 0.958 45 H 0.076 0.924 46 H 0.044 0.956 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.799 -27.137 5.600 28.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.077 4.077 3 N -0.261 5.261 4 C -0.091 4.091 5 C -0.012 4.012 6 N -0.355 5.355 7 C 0.305 3.695 8 O -0.404 6.404 9 C -0.179 4.179 10 C -0.141 4.141 11 C -0.140 4.140 12 C -0.030 4.030 13 C -0.640 4.640 14 H 0.066 0.934 15 C -0.191 4.191 16 N -0.551 5.551 17 Si 0.897 3.103 18 H -0.208 1.208 19 H -0.215 1.215 20 H -0.215 1.215 21 C 0.045 3.955 22 H 0.094 0.906 23 C -0.194 4.194 24 C -0.086 4.086 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.061 0.939 31 H 0.106 0.894 32 H 0.111 0.889 33 H 0.094 0.906 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.025 0.975 41 H 0.025 0.975 42 H 0.080 0.920 43 H 0.089 0.911 44 H 0.061 0.939 45 H 0.095 0.905 46 H 0.062 0.938 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.649 -25.413 5.461 26.830 hybrid contribution -0.381 -1.695 0.531 1.816 sum 6.268 -27.107 5.992 28.461 Atomic orbital electron populations 1.22449 0.98082 1.02473 1.02285 1.22173 0.93001 0.89547 1.02967 1.62161 1.59363 1.02222 1.02349 1.22518 0.98769 0.95106 0.92727 1.21836 1.00469 0.91557 0.87343 1.48305 1.65342 1.14878 1.06984 1.21019 0.76025 0.80489 0.92015 1.90744 1.47384 1.66244 1.36061 1.21841 1.03338 0.98373 0.94364 1.21456 1.01085 0.92257 0.99310 1.21514 1.00230 0.98055 0.94249 1.19221 0.95169 0.91259 0.97357 1.22086 1.46245 1.02017 0.93669 0.93438 1.25863 0.93722 0.95292 1.04273 1.70765 1.44654 1.40303 0.99392 0.83552 0.76375 0.76176 0.74166 1.20793 1.21491 1.21508 1.21425 0.99726 0.90741 0.83604 0.90633 1.22171 1.02990 0.99289 0.94968 1.22698 0.97781 0.94329 0.93798 0.92473 0.91960 0.92350 0.90518 0.90520 0.93937 0.89441 0.88917 0.90586 0.89424 0.89188 0.91853 0.91951 0.93386 0.93322 0.97506 0.97548 0.92039 0.91114 0.93929 0.90484 0.93826 0.89832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.23 9.22 37.16 0.34 -0.88 16 2 C 0.05 0.32 6.07 -3.83 -0.02 0.29 16 3 N -0.54 -4.25 4.83 -234.02 -1.13 -5.38 16 4 C 0.04 0.28 5.16 -3.71 -0.02 0.26 16 5 C 0.11 0.94 6.48 -3.60 -0.02 0.91 16 6 N -0.62 -6.99 3.00 -164.65 -0.49 -7.48 16 7 C 0.51 7.34 7.60 -10.98 -0.08 7.26 16 8 O -0.53 -9.22 11.49 5.56 0.06 -9.15 16 9 C -0.14 -1.91 4.13 -27.88 -0.12 -2.02 16 10 C -0.10 -1.87 4.50 -26.74 -0.12 -1.99 16 11 C -0.10 -2.16 5.15 -26.73 -0.14 -2.30 16 12 C 0.01 0.19 4.28 -27.88 -0.12 0.07 16 13 C -0.60 -17.76 9.11 -34.44 -0.31 -18.07 16 14 H 0.05 1.36 7.74 -52.49 -0.41 0.96 16 15 C 0.01 0.36 5.46 -17.82 -0.10 0.26 16 16 N -0.91 -29.08 13.65 55.43 0.76 -28.33 16 17 Si 1.07 25.91 29.90 -169.99 -5.08 20.82 16 18 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 20 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 21 C 0.15 1.55 3.67 -67.26 -0.25 1.31 16 22 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 23 C -0.14 -1.62 7.62 37.15 0.28 -1.33 16 24 C 0.04 0.37 4.26 -3.46 -0.01 0.36 16 25 H 0.06 0.40 6.72 -51.93 -0.35 0.05 16 26 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.41 6.54 -51.93 -0.34 0.08 16 28 H 0.08 0.42 8.05 -51.93 -0.42 0.00 16 29 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.04 0.36 6.84 -51.92 -0.35 0.01 16 31 H 0.09 0.52 8.04 -51.93 -0.42 0.10 16 32 H 0.09 0.69 6.04 -51.93 -0.31 0.38 16 33 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.09 1.05 7.46 -51.93 -0.39 0.66 16 35 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 37 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 38 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.01 0.19 8.01 -51.93 -0.42 -0.23 16 41 H 0.01 0.18 8.01 -51.93 -0.42 -0.24 16 42 H 0.27 8.57 7.22 -40.82 -0.29 8.27 16 43 H 0.07 0.99 6.79 -51.93 -0.35 0.63 16 44 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 45 H 0.08 1.08 6.77 -51.93 -0.35 0.72 16 46 H 0.04 0.43 6.70 -51.93 -0.35 0.08 16 47 H 0.08 0.63 8.11 -51.93 -0.42 0.21 16 LS Contribution 357.29 15.07 5.38 5.38 Total: -1.00 -33.64 357.29 -9.80 -43.44 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -8.60 Total: -3.42 kcal Atomic # 6 Polarization: -15.19 SS G_CDS: -0.69 Total: -15.88 kcal Atomic # 7 Polarization: -40.32 SS G_CDS: -0.87 Total: -41.19 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: 0.06 Total: -9.15 kcal Atomic # 14 Polarization: 25.91 SS G_CDS: -5.08 Total: 20.82 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.64 -9.80 -43.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588766796.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.263 kcal (2) G-P(sol) polarization free energy of solvation -33.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds