Wall clock time and date at job start Tue Mar 31 2020 05:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21285 * 119.99918 * 2 1 4 4 N 1.34775 * 120.00075 * 180.02562 * 2 1 3 5 5 C 1.46502 * 120.00195 * 355.71950 * 4 2 1 6 6 C 1.46507 * 119.99929 * 175.72121 * 4 2 1 7 7 C 1.53113 * 109.52530 * 119.99887 * 6 4 2 8 8 C 1.53036 * 109.28128 * 177.55613 * 7 6 4 9 9 N 1.46841 * 109.51450 * 300.83167 * 8 7 6 10 10 C 1.46902 * 110.99803 * 185.83072 * 9 8 7 11 11 C 1.53006 * 109.47037 * 76.55504 * 10 9 8 12 12 H 1.09000 * 109.46839 * 302.83633 * 11 10 9 13 13 C 1.52998 * 109.47283 * 62.84131 * 11 10 9 14 14 C 1.52999 * 109.47051 * 182.83898 * 11 10 9 15 15 C 1.50695 * 109.47258 * 174.99646 * 14 11 10 16 16 H 1.08006 * 119.99981 * 0.02562 * 15 14 11 17 17 C 1.37878 * 120.00473 * 179.97438 * 15 14 11 18 18 N 1.31515 * 119.99762 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00548 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46904 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47059 * 119.99872 * 19 17 15 22 22 H 1.48496 * 109.47292 * 240.00520 * 19 17 15 23 23 C 1.46825 * 111.21355 * 61.74573 * 9 8 7 24 24 C 1.53038 * 109.51403 * 298.25038 * 23 9 8 25 25 H 1.08997 * 109.46940 * 268.12598 * 1 2 3 26 26 H 1.08998 * 109.47612 * 28.13361 * 1 2 3 27 27 H 1.09003 * 109.47118 * 148.13217 * 1 2 3 28 28 H 1.08997 * 109.46944 * 269.04625 * 5 4 2 29 29 H 1.08997 * 109.46535 * 29.04960 * 5 4 2 30 30 H 1.09000 * 109.46753 * 149.04602 * 5 4 2 31 31 H 1.08999 * 109.57323 * 359.83900 * 6 4 2 32 32 H 1.09007 * 109.50111 * 57.61747 * 7 6 4 33 33 H 1.09001 * 109.53559 * 297.52540 * 7 6 4 34 34 H 1.09007 * 109.45558 * 60.83985 * 8 7 6 35 35 H 1.08996 * 109.46399 * 180.81358 * 8 7 6 36 36 H 1.09001 * 109.47184 * 196.55252 * 10 9 8 37 37 H 1.08997 * 109.47181 * 316.55592 * 10 9 8 38 38 H 1.08995 * 109.47234 * 65.11928 * 13 11 10 39 39 H 1.08995 * 109.46956 * 185.12809 * 13 11 10 40 40 H 1.09007 * 109.46853 * 305.12438 * 13 11 10 41 41 H 1.08999 * 109.47470 * 295.00219 * 14 11 10 42 42 H 1.09006 * 109.47090 * 55.00048 * 14 11 10 43 43 H 0.96998 * 120.00043 * 179.97438 * 18 17 15 44 44 H 1.09003 * 109.46712 * 178.23852 * 23 9 8 45 45 H 1.08994 * 109.45512 * 58.25668 * 23 9 8 46 46 H 1.09004 * 109.50215 * 299.23189 * 24 23 9 47 47 H 1.08998 * 109.50001 * 179.12410 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4515 -2.4342 0.0936 6 6 3.6429 -1.1689 -0.0952 7 6 4.2352 -1.8444 1.1446 8 6 5.7588 -1.8978 1.0117 9 7 6.1197 -2.6493 -0.1970 10 6 7.5738 -2.8397 -0.2840 11 6 8.0029 -3.9413 0.6874 12 1 7.6894 -3.6773 1.6974 13 6 7.3499 -5.2635 0.2798 14 6 9.5250 -4.0909 0.6486 15 6 9.9586 -5.0879 1.6921 16 1 9.2220 -5.5673 2.3200 17 6 11.2954 -5.3890 1.8448 18 7 12.1923 -4.8057 1.0799 19 14 11.8327 -6.6254 3.1378 20 1 10.6400 -7.1355 3.8607 21 1 12.5335 -7.7571 2.4795 22 1 12.7515 -5.9669 4.1007 23 6 5.6022 -1.9937 -1.4046 24 6 4.0739 -1.9433 -1.3437 25 1 -0.3633 -0.0336 1.0271 26 1 -0.3634 0.9062 -0.4845 27 1 -0.3633 -0.8728 -0.5426 28 1 1.3518 -2.7191 1.1410 29 1 0.4614 -2.3170 -0.3469 30 1 1.9987 -3.2091 -0.4433 31 1 4.0058 -0.1431 -0.1595 32 1 3.8417 -2.8574 1.2301 33 1 3.9671 -1.2737 2.0338 34 1 6.1528 -0.8839 0.9402 35 1 6.1826 -2.3912 1.8863 36 1 7.8425 -3.1269 -1.3006 37 1 8.0783 -1.9092 -0.0239 38 1 7.7332 -5.5735 -0.6924 39 1 7.5817 -6.0272 1.0221 40 1 6.2696 -5.1317 0.2191 41 1 9.8308 -4.4408 -0.3374 42 1 9.9903 -3.1264 0.8522 43 1 13.1328 -5.0172 1.1875 44 1 5.9122 -2.5568 -2.2849 45 1 5.9969 -0.9795 -1.4645 46 1 3.6779 -2.9578 -1.2975 47 1 3.6907 -1.4427 -2.2329 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589820224.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:12 Heat of formation + Delta-G solvation = -49.097314 kcal Electronic energy + Delta-G solvation = -22956.122925 eV Core-core repulsion = 19752.159791 eV Total energy + Delta-G solvation = -3203.963134 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.40700 -38.68872 -36.28386 -34.76066 -32.65772 -31.49825 -30.86877 -29.52598 -27.35396 -26.79489 -25.61794 -23.58703 -23.18880 -21.99454 -19.90219 -19.31300 -18.81045 -17.27487 -16.65335 -16.28002 -15.87826 -15.25928 -14.90307 -14.48228 -14.26059 -13.94703 -13.83172 -13.55165 -13.35041 -13.24107 -13.09109 -12.59005 -12.44817 -12.26467 -12.18949 -12.15889 -11.50934 -11.30981 -11.22162 -11.18810 -10.85013 -10.78680 -10.69898 -10.53511 -10.26650 -10.23006 -9.97700 -9.58161 -9.09025 -8.93180 -8.85360 -8.31170 -8.00656 -5.95868 -3.96681 2.38462 2.75209 3.32993 3.40568 3.44551 4.11208 4.30993 4.50006 4.66998 4.69017 4.75555 4.92349 4.98571 5.03276 5.16278 5.18950 5.29681 5.37880 5.40115 5.45467 5.56049 5.56236 5.62504 5.68151 5.85739 5.88450 5.99711 6.01614 6.07925 6.20509 6.24323 6.33094 6.41750 6.57641 6.74612 7.04623 7.14349 7.18150 7.23505 7.40206 7.45596 7.72347 7.88594 7.93178 8.04886 8.49290 9.10124 9.66669 11.15770 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.038090 B = 0.002937 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.922769 B = 9532.271696 C = 9685.551126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.509 3.491 3 O -0.550 6.550 4 N -0.611 5.611 5 C 0.072 3.928 6 C 0.137 3.863 7 C -0.120 4.120 8 C 0.057 3.943 9 N -0.534 5.534 10 C 0.060 3.940 11 C -0.077 4.077 12 H 0.054 0.946 13 C -0.121 4.121 14 C 0.026 3.974 15 C -0.510 4.510 16 H 0.056 0.944 17 C 0.054 3.946 18 N -0.897 5.897 19 Si 0.889 3.111 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.285 1.285 23 C 0.058 3.942 24 C -0.121 4.121 25 H 0.092 0.908 26 H 0.090 0.910 27 H 0.083 0.917 28 H 0.058 0.942 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.097 0.903 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.031 0.969 35 H 0.085 0.915 36 H 0.067 0.933 37 H 0.031 0.969 38 H 0.038 0.962 39 H 0.049 0.951 40 H 0.044 0.956 41 H 0.015 0.985 42 H 0.012 0.988 43 H 0.258 0.742 44 H 0.077 0.923 45 H 0.031 0.969 46 H 0.075 0.925 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.766 5.675 -4.058 24.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.298 3.702 3 O -0.427 6.427 4 N -0.344 5.344 5 C -0.071 4.071 6 C 0.034 3.966 7 C -0.159 4.159 8 C -0.071 4.071 9 N -0.259 5.259 10 C -0.067 4.067 11 C -0.096 4.096 12 H 0.072 0.928 13 C -0.178 4.178 14 C -0.012 4.012 15 C -0.548 4.548 16 H 0.074 0.926 17 C -0.146 4.146 18 N -0.537 5.537 19 Si 0.717 3.283 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.211 1.211 23 C -0.071 4.071 24 C -0.160 4.160 25 H 0.111 0.889 26 H 0.109 0.891 27 H 0.102 0.898 28 H 0.077 0.923 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.115 0.885 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.049 0.951 35 H 0.103 0.897 36 H 0.086 0.914 37 H 0.049 0.951 38 H 0.057 0.943 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.034 0.966 42 H 0.030 0.970 43 H 0.068 0.932 44 H 0.096 0.904 45 H 0.049 0.951 46 H 0.094 0.906 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -23.495 5.778 -4.064 24.534 hybrid contribution 0.830 0.002 0.647 1.052 sum -22.665 5.780 -3.417 23.639 Atomic orbital electron populations 1.21974 0.91978 1.04822 1.04662 1.20839 0.90622 0.83230 0.75535 1.90717 1.70724 1.31192 1.50111 1.48001 1.07124 1.06401 1.72879 1.21885 0.97066 0.86015 1.02152 1.21214 0.78504 1.01439 0.95482 1.21902 0.95689 1.01354 0.96947 1.22056 0.94355 0.96243 0.94470 1.61981 1.14298 1.48305 1.01277 1.22317 0.84723 0.98643 1.00984 1.21165 0.98608 0.93257 0.96582 0.92787 1.21555 0.98599 0.97305 1.00346 1.19146 0.88151 0.96715 0.97161 1.21271 0.91910 1.23574 1.18054 0.92558 1.25027 0.96963 0.96453 0.96189 1.69977 1.01180 1.43244 1.39333 0.86584 0.78631 0.81344 0.81742 1.19759 1.21114 1.21136 1.22025 0.93798 0.97312 0.93978 1.21917 0.96068 1.01024 0.96982 0.88930 0.89104 0.89827 0.92339 0.90769 0.90423 0.88537 0.90725 0.91612 0.95056 0.89699 0.91428 0.95063 0.94304 0.93159 0.93740 0.96634 0.96996 0.93189 0.90408 0.95111 0.90649 0.91665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.06 9.63 36.00 0.35 -0.72 16 2 C 0.51 5.45 7.78 -10.99 -0.09 5.36 16 3 O -0.55 -8.43 16.44 5.55 0.09 -8.34 16 4 N -0.61 -5.78 2.77 -173.79 -0.48 -6.26 16 5 C 0.07 0.43 9.36 59.85 0.56 0.99 16 6 C 0.14 1.52 2.59 -67.81 -0.18 1.35 16 7 C -0.12 -1.37 5.41 -26.65 -0.14 -1.51 16 8 C 0.06 0.78 5.29 -3.84 -0.02 0.76 16 9 N -0.53 -7.66 3.85 -234.69 -0.90 -8.56 16 10 C 0.06 1.04 4.42 -3.82 -0.02 1.02 16 11 C -0.08 -1.57 2.39 -90.62 -0.22 -1.78 16 12 H 0.05 1.12 6.80 -51.93 -0.35 0.77 16 13 C -0.12 -2.31 8.85 37.16 0.33 -1.98 16 14 C 0.03 0.66 4.45 -27.89 -0.12 0.54 16 15 C -0.51 -14.30 8.47 -34.44 -0.29 -14.59 16 16 H 0.06 1.55 7.06 -52.48 -0.37 1.18 16 17 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 18 N -0.90 -27.13 13.29 55.43 0.74 -26.39 16 19 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 20 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 C 0.06 0.71 5.42 -3.85 -0.02 0.69 16 24 C -0.12 -1.27 5.39 -26.65 -0.14 -1.41 16 25 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.08 0.32 6.01 -51.93 -0.31 0.00 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.28 5.72 -51.93 -0.30 -0.02 16 30 H 0.08 0.47 6.37 -51.93 -0.33 0.14 16 31 H 0.10 1.32 6.92 -51.93 -0.36 0.96 16 32 H 0.07 0.82 7.60 -51.93 -0.39 0.43 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.03 0.44 8.14 -51.92 -0.42 0.02 16 35 H 0.08 1.24 6.72 -51.93 -0.35 0.89 16 36 H 0.07 1.16 7.78 -51.93 -0.40 0.75 16 37 H 0.03 0.56 7.99 -51.93 -0.41 0.14 16 38 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.05 1.03 7.11 -51.93 -0.37 0.66 16 40 H 0.04 0.76 7.54 -51.92 -0.39 0.36 16 41 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 44 H 0.08 0.93 7.92 -51.93 -0.41 0.52 16 45 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.07 0.75 6.57 -51.93 -0.34 0.41 16 47 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 359.96 15.07 5.42 5.42 Total: -1.00 -32.64 359.96 -8.72 -41.35 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: -8.46 Total: -4.15 kcal Atomic # 6 Polarization: -9.72 SS G_CDS: -0.10 Total: -9.83 kcal Atomic # 7 Polarization: -40.56 SS G_CDS: -0.65 Total: -41.21 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: 0.09 Total: -8.34 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.64 -8.72 -41.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589820224.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.743 kcal (2) G-P(sol) polarization free energy of solvation -32.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds